>VFJ629 (VFJ629Q) /CSM/VF/VFJ6-B/VFJ629Q.Seq.d/
AATTTAAAAAATGATGAAATTTTTAATTGTTTTAATTTTAGCATTATTCGCTTTATCAAG
TGTTAATGCAAGCAGCGCTATTGAATGCGAACTTTGTGAATATGCTGCCAATTATGGTGA
ATTGCTCATTCAATCAAATGCCACCGAAACTGAAATTATCGATAAAGTTGAAAACTTTTG
CAAAGTTATCCCATCTAGTTTCCAAGCCACTTGTGATAGTTTAATCGCAAACTATGGTAA
ACAACTCATTCAAATGATTGTCAACAAAGAATCACCAAGCACTTTATGCGCTCAAATTGA
TATGTGTGCATCATCAACTGAAGCCGTCCAAGGTATTTTAGAATGTGACATTTGCCAATT
CATCGTTAAACAAGTCAACAAATATATTTCAGGTAACGCAACTGAAGCCCAAATCCTCAA
ATTCTTAGATACTGATTGTGAAGTCTTTGGTAAAGGTGGTTCAGTAACTTGTCAAAAXXX
XXXXXXX

i*KMMKFLIVLILALFALSSVNASSAIECELCEYAANYGELLIQSNATETEIIDKVENFC
KVIPSSFQATCDSLIANYGKQLIQMIVNKESPSTLCAQIDMCASSTEAVQGILECDICQF
IVKQVNKYISGNATEAQILKFLDTDCEVFGKGGSVTCQ---

Frame A:
nlkndeifncfnfsiirfikc*ckqry*mrtl*iccqlw*iahsikchrn*nyr*s*kll
qsypi*fpshl**fnrklw*tthsndcqqritkhfmrsn*yvciin*srpryfrm*hlpi
hr*tsqqiyfr*rn*spnpqilry*l*slw*rwfsnls---


Frame B:
i*KMMKFLIVLILALFALSSVNASSAIECELCEYAANYGELLIQSNATETEIIDKVENFC
KVIPSSFQATCDSLIANYGKQLIQMIVNKESPSTLCAQIDMCASSTEAVQGILECDICQF
IVKQVNKYISGNATEAQILKFLDTDCEVFGKGGSVTCQ---


Frame C:
fkk**nf*lf*f*hyslyqvlmqaallnanfvnmlpimvncsfnqmppklklsiklktfa
klshlvskplviv*sqtmvnnsfk*lstknhqalyalklicvhhqlkpskvf*nvtfans
slnkstnifqvtqlkpkssns*ilivkslvkvvq*lvk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/                        946   0.0
VSD442 (VSD442Q) /CSM/VS/VSD4-B/VSD442Q.Seq.d/                        946   0.0
VFO870 (VFO870Q) /CSM/VF/VFO8-C/VFO870Q.Seq.d/                        946   0.0
VFN547 (VFN547Q) /CSM/VF/VFN5-B/VFN547Q.Seq.d/                        946   0.0
VFL608 (VFL608Q) /CSM/VF/VFL6-A/VFL608Q.Seq.d/                        946   0.0
VFL571 (VFL571Q) /CSM/VF/VFL5-C/VFL571Q.Seq.d/                        946   0.0
VFJ629 (VFJ629Q) /CSM/VF/VFJ6-B/VFJ629Q.Seq.d/                        946   0.0
VFF888 (VFF888Q) /CSM/VF/VFF8-D/VFF888Q.Seq.d/                        946   0.0
VFF843 (VFF843Q) /CSM/VF/VFF8-B/VFF843Q.Seq.d/                        946   0.0
VFF621 (VFF621Q) /CSM/VF/VFF6-A/VFF621Q.Seq.d/                        946   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AU206530|AU206530.1 Caenorhabditis elegans cDNA clone:yk877f01 : 5' end, single read.   230   1e-56  1
AF175768|AF175768.1 Dictyostelium discoideum SAPLIP C protein mRNA, complete cds.    84   3e-13  2
AY379774|AY379774.1 Medicago truncatula chromosome 5 clone MtH1-015B03 strain Jemalong A17, WORKING DRAFT SEQUENCE, 27 unordered pieces.    52   0.001  3
AC016100|AC016100.4 Homo sapiens clone RP11-26F22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    38   0.002  7
AC129358|AC129358.4 Rattus norvegicus clone CH230-387H5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   0.005  4
AC019292|AC019292.10 Homo sapiens, clone RP11-23J14, complete sequence.    44   0.007  5
AC010838|AC010838.11 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR13D24, complete sequence.    36   0.013  5
AC025855|AC025855.3 Homo sapiens chromosome 8 clone RP11-392L24 map 8, LOW-PASS SEQUENCE SAMPLING.    40   0.014  2
AE003652|AE003652.2 Drosophila melanogaster chromosome 2L section 61 of 83 of the complete sequence.    36   0.096  10
AL132948|AL132948.2 Caenorhabditis elegans YAC Y39B6A.             40   0.10   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...    87   2e-16
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    85   1e-15
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    85   1e-15
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167...    85   1e-15
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    81   1e-14
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    81   1e-14
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...    81   1e-14
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    80   2e-14
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    80   2e-14
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    76   4e-13

 psg: 0.99  gvh: 0.88  alm: 0.45  top: 0.07  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VFJ629 is exc

>VFJ629F.Seq
AATTTAAAAAATGATGAAATTTTTAATTGTTTTAATTTTAGCATTATTCGCTTTATCAAG
TGTTAATGCAAGCAGCGCTATTGAATGCGAACTTTGTGAATATGCTGCCAATTATGGTGA
ATTGCTCATTCAATCAAATGCCACCGAAACTGAAATTATCGATAAAGTTGAAAACTTTTG
CAAAGTTATCCCATCTAGTTTCCAAGCCACTTGTGATAGTTTAATCGCAAACTATGGTAA
ACAACTCATTCAAATGATTGTCAACAAAGAATCACCAAGCACTTTATGCGCTCAAATTGA
TATGTGTGCATCATCAACTGAAGCCGTCCAAGGTATTTTAGAATGTGACATTTGCCAATT
CATCGTTAAACAAGTCAACAAATATATTTCAGGTAACGCAACTGAAGCCCAAATCCTCAA
ATTCTTAGATACTGATTGTGAAGTCTTTGGTAAAGGTGGTTCAGTAACTTGTCAAAANNN
NNNNNNN