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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ586
Library VF
(Link to library)
Clone ID VFJ586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID VFJ586P
(Link to Original site)
Representative DNA sequence 
>VFJ586 (VFJ586Q) /CSM/VF/VFJ5-D/VFJ586Q.Seq.d/
CAATATAAAAAAGACTTTGAAAATAACAATCCAATNAATTATAACAATTATTAAAAACAA
AAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCACATTACTATTTCAATTTAATTTTTT
ACAACCATCGTCATCAATAAAATCAAAATTGGAATTTAAATCACCAATTGAAATTAAGAT
GATGAAGCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAG
TAGATCATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACA
AACTGCACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAA
CAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAA
TCCACCACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAG
AACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAAC
AATGGGTTGTACTGGTCCAAXXXXXXXXXXCCAGTTCCCTTGGTTAAAATGGGTGATAAC
TTTAAAAAGGTTTCNGATTATCNAGCTCGNANCAAAGGNATTCCNNATATTTTGGAATTG
GATCAACNCCCCGTTTCTGGTGANANAACCNTTG
sequence update 2001.11.22
Translated Amino Acid sequence 
NIKKTLKITIQXIITIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKM
MKPDLNSPLPQSPQLQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSIN
KLFTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTT
MGCTGP---

---PVPLVKMGDNFKKVSDYXARXKGIPXILELDQXPVSGXXTX
Translated Amino Acid sequence (All Frames) 
Frame A:
qykkdfennnpxnynny*kqkdilfflvffihitisi*ffttivinkikigi*itn*n*d
dearfk*sittitttsiiwk*iirscnrgfifeeigsnltnctk*nske*ifkqrntiyq
qivypflke*kesnrlg*nqstts*ygfkl*rftsnh*tknfrtrfkigcfeikwrfryn
nglyws---

---PVPLVKMGDNFKKVSDYXARXKGIPXILELDQXPVSGXXTX

Frame B:
NIKKTLKITIQXIITIIKNKKIFCFFLFSLFTLLFQFNFLQPSSSIKSKLEFKSPIEIKM
MKPDLNSPLPQSPQLQSFGSRSSDLATEDLFLKKLEAISQTAPNETVKNEFLNKEIPSIN
KLFTRFLKNRKKVIDWDKINPPPADMVLNYKDLPAITEQRTSELASKLAVLKLNGGLGTT
MGCTGP---

---qfpwlkwvitlkrfxiixlxxkxfxifwnwinxpflvxxpl

Frame C:
i*krl*k*qsnxl*qllktkryfvfscflyshyyfnlifynhrhq*nqnwnlnhqlklr*
*sqi*ivhyhnhhnfnhlevdhqilqpriyf*rnwkqshklhqmkq*rmnf*tkkyhlst
nclpvs*rierk*sigiksihhqliwf*tikiyqqslnkelqnslqnwlf*n*mev*vqq
wvvlvq---

---sslg*ng**l*kgfxlsssxqrxsxyfgigstprfw*xnx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ586 (VFJ586Q) /CSM/VF/VFJ5-D/VFJ586Q.Seq.d/                       1013   0.0
VFK661 (VFK661Q) /CSM/VF/VFK6-C/VFK661Q.Seq.d/                        872   0.0
VFA701 (VFA701Q) /CSM/VF/VFA7-A/VFA701Q.Seq.d/                        872   0.0
SFC341 (SFC341Q) /CSM/SF/SFC3-B/SFC341Q.Seq.d/                        872   0.0
CHD685 (CHD685Q) /CSM/CH/CHD6-D/CHD685Q.Seq.d/                        872   0.0
CHA209 (CHA209Q) /CSM/CH/CHA2-A/CHA209Q.Seq.d/                        872   0.0
CFK491 (CFK491Q) /CSM/CF/CFK4-D/CFK491Q.Seq.d/                        872   0.0
CFI278 (CFI278Q) /CSM/CF/CFI2-D/CFI278Q.Seq.d/                        872   0.0
CFH268 (CFH268Q) /CSM/CF/CFH2-C/CFH268Q.Seq.d/                        872   0.0
CFE266 (CFE266Q) /CSM/CF/CFE2-C/CFE266Q.Seq.d/                        872   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.   773   0.0    2
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728.          52   2e-08  3
BQ060478|BQ060478.1 Bvstrg3ARGF7 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UDP-glucose pyrophosphorylase, mRNA sequence.    60   4e-05  1
CF214146|CF214146.1 CGF1000813_B02 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_B02 5', mRNA sequence.    52   0.011  1
CB970932|CB970932.1 CAB10004_IVa_Fa_D03 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10004_IVa_Fa_D03 5', mRNA sequence.    52   0.011  1
BI096068|BI096068.1 PIP2ER_C07 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to UTP-glucose-1-phosphate uridyltransferase, mRNA sequence.    52   0.011  1
BQ489864|BQ489864.1 39-E9426-006-009-M10-T3 Sugar beet MPIZ-ADIS-006 Lambda Zap II library Beta vulgaris cDNA clone M-10-9, mRNA sequence.    52   0.011  1
BM437904|BM437904.1 VVA027D07_55303 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVA027D07 5, mRNA sequence.    52   0.011  1
CD720025|CD720025.1 VVB167G01_411957 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB167G01 5, mRNA sequence.    52   0.011  1
CD718432|CD718432.1 VVB150A05_408771 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB150A05 5, mRNA sequence.    52   0.011  1
dna update 2004. 1.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   254   2e-66
AY850189_1(AY850189|pid:none) Emericella nidulans UDP-glucose py...    79   2e-13
AL590443_27(AL590443|pid:none) chromosome III of strain GB-M1 of...    78   3e-13
CR382127_82(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    77   4e-13
CS000704_1(CS000704|pid:none) Sequence 9 from Patent WO2005005629.     77   4e-13
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    77   6e-13
BC060013_1(BC060013|pid:none) Xenopus laevis hypothetical protei...    76   1e-12
AE017343_372(AE017343|pid:none) Cryptococcus neoformans var. neo...    75   1e-12
AM920436_1279(AM920436|pid:none) Penicillium chrysogenum Wiscons...    74   5e-12
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...    74   5e-12
protein update 2009. 6.22
PSORT 

 psg: 0.89  gvh: 0.65  alm: 0.47  top: 0.47  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFJ586 is exc
5' end seq. ID VFJ586F
5' end seq. 
>VFJ586F.Seq
CAATATAAAAAAGACTTTGAAAATAACAATCCAATNAATTATAACAATTATTAAAAACAA
AAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCACATTACTATTTCAATTTAATTTTTT
ACAACCATCGTCATCAATAAAATCAAAATTGGAATTTAAATCACCAATTGAAATTAAGAT
GATGAAGCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAG
TAGATCATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACA
AACTGCACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAA
CAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAA
TCCACCACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAG
AACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAAC
AATGGGTTGTACTGGTCCAANNNNNNNNNN
Length of 5' end seq. 570
3' end seq. ID VFJ586Z
3' end seq. 
>VFJ586Z.Seq
NNNNNNNNNNCCAGTTCCCTTGGTTAAAATGGGTGATAACTTTAAAAAGGTTTCNGATTA
TCNAGCTCGNANCAAAGGNATTCCNNATATTTTGGAATTGGATCAACNCCCCGTTTCTGG
TGANANAACCNTTG
Length of 3' end seq. 134
Connected seq. ID VFJ586P
Connected seq. 
>VFJ586P.Seq
CAATATAAAAAAGACTTTGAAAATAACAATCCAATNAATTATAACAATTATTAAAAACAA
AAAGATATTTTGTTTTTTCTTGTTTTCTTTATTCACATTACTATTTCAATTTAATTTTTT
ACAACCATCGTCATCAATAAAATCAAAATTGGAATTTAAATCACCAATTGAAATTAAGAT
GATGAAGCCAGATTTAAATAGTCCATTACCACAATCACCACAACTTCAATCATTTGGAAG
TAGATCATCAGATCTTGCAACCGAGGATTTATTTTTGAAGAAATTGGAAGCAATCTCACA
AACTGCACCAAATGAAACAGTAAAGAATGAATTTTTAAACAAAGAAATACCATCTATCAA
CAAATTGTTTACCCGTTTCTTAAAGAATAGAAAGAAAGTAATCGATTGGGATAAAATCAA
TCCACCACCAGCTGATATGGTTTTAAACTATAAAGATTTACCAGCAATCACTGAACAAAG
AACTTCAGAACTCGCTTCAAAATTGGCTGTTTTGAAATTAAATGGAGGTTTAGGTACAAC
AATGGGTTGTACTGGTCCAA----------CCAGTTCCCTTGGTTAAAATGGGTGATAAC
TTTAAAAAGGTTTCNGATTATCNAGCTCGNANCAAAGGNATTCCNNATATTTTGGAATTG
GATCAACNCCCCGTTTCTGGTGANANAACCNTTG
Length of connected seq. 684
Full length Seq ID -
Full length Seq. -
Length of full length seq. -