VFJ482
Library VF
(Link to library)
Clone ID VFJ482
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15331-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFJ482 (VFJ482Q) /CSM/VF/VFJ4-D/VFJ482Q.Seq.d/
CACACAATATATAAAATGTCATCTTATTTATTAACTAGTGAATCCGTCACCGAAGGTCAT
CCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTTAGCTCAAGAT
CCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTATGATTTTAGGT
GAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGCTGTTAAAAAG
ATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGTTTTAGTTGCA
ATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGTTAACCCAGAA
GATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGAAACCCCAACT
TTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAACTGAATTACGT
CACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCACTGTTGAATAC
AAAAAAGAAGGTCACAAAATCACTCCAGCCAGAGTACACACCCATCGTTATTTCAACTCA
ACACGACGAAAAAGTCACCAACGAACAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
HTIYKMSSYLLTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMILG
EITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKVNPE
DIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVTVEY
KKEGHKITPARVHTHRYFNSTRRKSHQRT---


Translated Amino Acid sequence (All Frames)
Frame A:
HTIYKMSSYLLTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMILG
EITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKVNPE
DIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAKTQVTVEY
KKEGHKITPARVHTHRYFNSTRRKSHQRT---


Frame B:
tqyikchliy*lvnpspkviqiksvikyqmlfsmlv*lkihyqkllvklqpklvwl*f*v
klppkptltikklfvkllkrlvmmthqkvlitklamf*lqlnnnhqillkvstlvkltqk
ilvlvikvtclvmpptkpql*chllisspln*stn*lnyvtmvp*pglvqmprlksllnt
kkkvtkslqpeytpivistqhdekvtne---


Frame C:
hni*nvilfin**irhrrssr*nl*ssirccsrclfssrsiikscl*ncnqnwygydfr*
nyhqsqr*lskscs*sc*kdwl**likrf*lqnlqcfscn*ttitrycsrcphw*s*prr
ywcw*srshvwlchqrnpnfnatysfprl*isqqin*itsqwylslgssrcqdsshc*iq
krrsqnhssqsthpslfqlnttkksptn---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFJ482 (VFJ482Q) /CSM/VF/VFJ4-D/VFJ482Q.Seq.d/ 1245 0.0
VFM759 (VFM759Q) /CSM/VF/VFM7-C/VFM759Q.Seq.d/ 1229 0.0
CFJ330 (CFJ330Q) /CSM/CF/CFJ3-B/CFJ330Q.Seq.d/ 1221 0.0
VFN128 (VFN128Q) /CSM/VF/VFN1-B/VFN128Q.Seq.d/ 1213 0.0
VFM766 (VFM766Q) /CSM/VF/VFM7-C/VFM766Q.Seq.d/ 1213 0.0
VFL503 (VFL503Q) /CSM/VF/VFL5-A/VFL503Q.Seq.d/ 1213 0.0
VFL319 (VFL319Q) /CSM/VF/VFL3-A/VFL319Q.Seq.d/ 1213 0.0
VFL166 (VFL166Q) /CSM/VF/VFL1-C/VFL166Q.Seq.d/ 1213 0.0
VFI164 (VFI164Q) /CSM/VF/VFI1-C/VFI164Q.Seq.d/ 1213 0.0
VFI116 (VFI116Q) /CSM/VF/VFI1-A/VFI116Q.Seq.d/ 1213 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ390497|AJ390497.1 Candida albicans partial mRNA for S-adenosylmethionine synthetase 2 (sam2 gene). 107 1e-50 3
AX830438|AX830438.1 Sequence 1158 from Patent WO03072602. 109 1e-39 4
AX819408|AX819408.1 Sequence 1158 from Patent EP1338608. 109 1e-39 4
AX595308|AX595308.1 Sequence 962 from Patent EP1258494. 109 1e-39 4
M23368|M23368.1 Saccharomyces cerevisiae S-adenosylmethionine synthetase (SAM2) gene, complete cds. 109 5e-39 4
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073. 109 2e-37 3
CA754635| (NM_068470) S-adenosylmethionine synthetase [Caenorhabditis, mRNA sequence. 66 7e-32 5
T37377|T37377.1 EST102487 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence. 70 3e-29 3
AL424144|AL424144.1 T7 end of clone AZ0AA012F03 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus. 78 5e-25 3
BU256602|BU256602.1 603748494F1 CSEQCHN38 Gallus gallus cDNA clone ChEST657k23 5', mRNA sequence. 76 4e-24 4
dna update 2004. 2.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54F07) RecName: Full=S-adenosylmethionine synthetase; ... 380 e-104
AY324626_1(AY324626|pid:none) Amoeba proteus S-adenosylmethionin... 280 2e-74
AB461924_1(AB461924|pid:none) Cylindrotheca closterium MAT mRNA ... 269 1e-72
(Q9FPL6) RecName: Full=S-adenosylmethionine synthetase 2; ... 266 2e-72
AB461922_1(AB461922|pid:none) Asterionella glacialis MAT mRNA fo... 266 4e-72
(P50304) RecName: Full=S-adenosylmethionine synthetase; ... 272 7e-72
(P31153) RecName: Full=S-adenosylmethionine synthetase isoform t... 272 7e-72
(Q9FUZ1) RecName: Full=S-adenosylmethionine synthetase 2; ... 266 1e-71
AK161852_1(AK161852|pid:none) Mus musculus adult male medulla ob... 271 1e-71
AK133960_1(AK133960|pid:none) Mus musculus 8 days embryo whole b... 271 1e-71
protein update 2009. 6.22
PSORT

psg: 0.87 gvh: 0.58 alm: 0.46 top: 0.20 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFJ482 is exc

5' end seq. ID VFJ482F
5' end seq.
>VFJ482F.Seq
CACACAATATATAAAATGTCATCTTATTTATTAACTAGTGAATCCGTCACCGAAGGTCAT
CCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTCGATGCTTGTTTAGCTCAAGAT
CCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACTGGTATGGTTATGATTTTAGGT
GAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTTGTTCGTGAAGCTGTTAAAAAG
ATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAAACTTGCAATGTTTTAGTTGCA
ATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCACATTGGTAAAGTTAACCCAGAA
GATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTATGCCACCAACGAAACCCCAACT
TTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTCAACAAATTAACTGAATTACGT
CACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAGACTCAAGTCACTGTTGAATAC
AAAAAAGAAGGTCACAAAATCACTCCAGCCAGAGTACACACCCATCGTTATTTCAACTCA
ACACGACGAAAAAGTCACCAACGAACAANNNNNNNNNN
Length of 5' end seq. 638
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -