>VFJ438 (VFJ438Q) /CSM/VF/VFJ4-B/VFJ438Q.Seq.d/
XXXXXXXXXXATTCANCAGATGAAAGTTGNAGCAGAATTNAATAAATTTGGTGAATTAAA
AGAAATCTNTGAACCATCTTATNNATCTNAAGTAACTGAATGTAAAGGTGTTATGNTTGT
AGTTCATCTTTTTGAAAATGGTATTCCTCAATGTCAATTAGTAAATCAACATTTANCAAT
ATTAGCAAAGAAATTTAAAGCAACTAAATTTGTAAAGATTAGATCAGAGGAAGCAATTCA
TAATTATCCAGATAAGAATTTACCAACAATTTTAGTTTATTTCAATGGTGATATCGTTGG
TCAAATCATTACATTAAGAGCAACAGGTGGTGATGCTACAACTGTAAATGATATTGAATG
GCAAC

---XQMKVXAEXNKFGELKEIXEPSYXSXVTECKGVMXVVHLFENGIPQCQLVNQHLXIL
AKKFKATKFVKIRSEEAIHNYPDKNLPTILVYFNGDIVGQIITLRATGGDATTVNDIEWQ

Frame A:
---fxr*klxqnxinlvn*kksxnhlxxlk*lnvkvlxl*fiflkmvflnvn**inixqy
*qrnlkqlnl*rldqrkqfiiiqiriyqqf*fismvislvkslh*eqqvvmlql*milng
n


Frame B:
---sxdesxsrix*iw*ikrnl*tilxixsn*m*rcyxcsssf*kwyssmsiskstfxni
skei*sn*ickd*irgsns*lsr*eftnnfslfqw*yrwsnhyiksnrw*cynck*y*ma


Frame C:
---XQMKVXAEXNKFGELKEIXEPSYXSXVTECKGVMXVVHLFENGIPQCQLVNQHLXIL
AKKFKATKFVKIRSEEAIHNYPDKNLPTILVYFNGDIVGQIITLRATGGDATTVNDIEWQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ438 (VFJ438Q) /CSM/VF/VFJ4-B/VFJ438Q.Seq.d/                        650   0.0
VSF148 (VSF148Q) /CSM/VS/VSF1-B/VSF148Q.Seq.d/                         36   0.35
SSI129 (SSI129Q) /CSM/SS/SSI1-B/SSI129Q.Seq.d/                         36   0.35
VFB221 (VFB221Q) /CSM/VF/VFB2-A/VFB221Q.Seq.d/                         34   1.4
SSB673 (SSB673Q) /CSM/SS/SSB6-D/SSB673Q.Seq.d/                         34   1.4
SFG734 (SFG734Q) /CSM/SF/SFG7-B/SFG734Q.Seq.d/                         34   1.4
SFF882 (SFF882Q) /CSM/SF/SFF8-D/SFF882Q.Seq.d/                         34   1.4
SFF555 (SFF555Q) /CSM/SF/SFF5-C/SFF555Q.Seq.d/                         34   1.4
SFE862 (SFE862Q) /CSM/SF/SFE8-C/SFE862Q.Seq.d/                         34   1.4
SFA813 (SFA813Q) /CSM/SF/SFA8-A/SFA813Q.Seq.d/                         34   1.4

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF540059|AF540059.1 Dictyostelium discoideum PhLP2 (phlp2) mRNA, complete cds.   618   e-173  1
AC020814|AC020814.2 Mus musculus clone RG-MBAC_270F3, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    38   0.056  2
AE016749|AE016749.1 Staphylococcus epidermidis ATCC 12228, section 6 of 9 of the complete genome.    34   0.16   8
AC110591|AC110591.7 Homo sapiens chromosome 18, clone CTD-2504O24, complete sequence.    34   0.29   6
AV044470|AV044470.2 Mus musculus adult male testis cDNA, partial sequence, clone 1700034O11.    46   0.34   1
BX539324|BX539324.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40   0.60   5
AL365200|AL365200.5 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP6-93J16.    36   0.90   4
BX005172|BX005172.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-205L4.    44   1.3    1
AC097666|AC097666.7 Rattus norvegicus clone CH230-76A18, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   1.3    1
AL691515|AL691515.9 Human DNA sequence from clone RP11-316I3 on chromosome 1.    44   1.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q71A38) RecName: Full=Phosducin-like protein 2;                      220   1e-56
(Q5RB77) RecName: Full=Phosducin-like protein 3;  &CR858776_1(CR...   104   8e-22
BC077206_1(BC077206|pid:none) Xenopus laevis MGC78962 protein, m...   104   1e-21
(Q0VCW8) RecName: Full=Phosducin-like protein 3;  &BC119960_1(BC...   103   2e-21
(Q4KLJ8) RecName: Full=Phosducin-like protein 3;  &BC099162_1(BC...   102   3e-21
BC005601_1(BC005601|pid:none) Mus musculus phosducin-like 3, mRN...   102   4e-21
AK004334_1(AK004334|pid:none) Mus musculus 18-day embryo whole b...   102   4e-21
(Q8BVF2) RecName: Full=Phosducin-like protein 3; AltName: Full=V...   102   4e-21
BC152648_1(BC152648|pid:none) Danio rerio phosducin-like 3, mRNA...   101   9e-21
AY275176_1(AY275176|pid:none) Branchiostoma belcheri tsingtaunes...   100   3e-20

 psg: 0.60  gvh: 0.41  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFJ438 is cyt

>VFJ438Z.Seq
NNNNNNNNNNATTCANCAGATGAAAGTTGNAGCAGAATTNAATAAATTTGGTGAATTAAA
AGAAATCTNTGAACCATCTTATNNATCTNAAGTAACTGAATGTAAAGGTGTTATGNTTGT
AGTTCATCTTTTTGAAAATGGTATTCCTCAATGTCAATTAGTAAATCAACATTTANCAAT
ATTAGCAAAGAAATTTAAAGCAACTAAATTTGTAAAGATTAGATCAGAGGAAGCAATTCA
TAATTATCCAGATAAGAATTTACCAACAATTTTAGTTTATTTCAATGGTGATATCGTTGG
TCAAATCATTACATTAAGAGCAACAGGTGGTGATGCTACAACTGTAAATGATATTGAATG
GCAAC