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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM744
Library AF
(Link to library)
Clone ID AFM744
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM744P
(Link to Original site)
Representative DNA sequence 
>AFM744 (AFM744Q) /CSM/AF/AFM7-B/AFM744Q.Seq.d/
ATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTAT
TTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACT
TCAATCAATTGCAAAAGCGTTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTT
ACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGG
AAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACA
AATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAA
AATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTC
ATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATC
ATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATG
TCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTAXXXXXXXXXXAATTGTTTT
TACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATC
AAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTG
AATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTT
TAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTT
GGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAA
CCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTAC
ACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAA
CTGTTGTTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTT
CCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACTTTCCAAACCATTATTCCAT
TACTCGATAGCACAATTGNACAATCAAGAGTCAAACCATTACTCGTAAAACTTCATGAAG
ATACNTATAAAGATGTTAAATTCTATGCNAGCCAAGCACNCCAATTATGTTAAATAAAAA
AAAAAC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
yi*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYL
QDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCK
IAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLC
HDDTPMVKRAAAT---

---LFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAII
DYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIP
KVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTF
QTIIPLLDSTIXQSRVKPLLVKLHEDTYKDVKFYASQAXQLC*ikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyikngiykyrig*lssncyfn**ikk*gytt*t*fnkktsincksvrtrtypyrinpif
trlcsrr*r*sfsciirrirkfnrvcwwcrtcclfittitnfsrc*gisc*rkgsgiim*
nckrdpniiirriipsiiifiiksrlvyityismwtfhciiskskc*neeifkknfwgim
sr*ytng*esccn---

---ncfyis*kmisqmfv*isfqn*ik*vk*lvlkcyhnlyyqlslnwlkiinge*d*ql
liifhf*lhn*vlnslmknlviyv*lg*viqyfqfvkqqlii*rn*pkyleligqriilf
qkfylytliqtisiv*phyfqfqpfqlllevmlslvqwflywpkwfpikfqildlm*lkl
skplfhysiaqlxnqesnhys*nfmkixikmlnsmxakhxnyvk*kkn

Frame B:
yi*KMASINTESDDYHPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYL
QDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCK
IAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLC
HDDTPMVKRAAAT---

---ivftslkr*fprcsfkyhfkirssk*snwy*nvitisitsyr*ig*rssmeskisny
*lystfsftirc*il**ktw*fmydlvr*ssifns*ssn**feeinrsiws*lgke*yys
ksfiftlssklslsydhiifnfnpfnccwr*cyl*fngsfigqngfr*ssky*i*cs*nf
pnhysitr*hnxtiksqtitrkts*ryx*rc*ilcxpstpimlnkkk

Frame C:
iykkwhl*iqnrmiiiqllf*lmn*kmriynldliq*knfnqlqkr*dqnvpvqn*shiy
ktlfskmkmkf*lyyqkn*ei*ssllvvqnmlfvyyhhykf*qvlrn*llekrqwnhyvk
lqkrsqhhhsknhsfhyyfhyqkqiglhhvhqhvdfslyhiqeqmlk*rnl*ekllgdyv
tmihqwlrellql---

---LFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAII
DYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIP
KVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTF
QTIIPLLDSTIXQSRVKPLLVKLHEDTYKDVKFYASQAXQLC*ikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM744 (AFM744Q) /CSM/AF/AFM7-B/AFM744Q.Seq.d/                       2363   0.0
AFL883 (AFL883Q) /CSM/AF/AFL8-D/AFL883Q.Seq.d/                       1285   0.0
CFC574 (CFC574Q) /CSM/CF/CFC5-D/CFC574Q.Seq.d/                       1273   0.0
SFF891 (SFF891Q) /CSM/SF/SFF8-D/SFF891Q.Seq.d/                       1265   0.0
SFF850 (SFF850Q) /CSM/SF/SFF8-C/SFF850Q.Seq.d/                       1265   0.0
AFN841 (AFN841Q) /CSM/AF/AFN8-B/AFN841Q.Seq.d/                       1261   0.0
VHB858 (VHB858Q) /CSM/VH/VHB8-C/VHB858Q.Seq.d/                       1259   0.0
SFI857 (SFI857Q) /CSM/SF/SFI8-C/SFI857Q.Seq.d/                       1257   0.0
AFK893 (AFK893Q) /CSM/AF/AFK8-D/AFK893Q.Seq.d/                       1255   0.0
SFJ287 (SFJ287Q) /CSM/SF/SFJ2-D/SFJ287Q.Seq.d/                       1253   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347180) Dictyostelium discoideum cDNA clone:dda26h11, 3' ...  1292   0.0    1
(BJ346720) Dictyostelium discoideum cDNA clone:dda24f22, 3' ...  1285   0.0    1
(BJ374155) Dictyostelium discoideum cDNA clone:ddc6c19, 3' e...  1273   0.0    1
(U61987) Dictyostelium discoideum phosphoprotein phosphatase...  1269   0.0    1
(BJ345617) Dictyostelium discoideum cDNA clone:dda28b12, 3' ...  1261   0.0    1
(BJ437521) Dictyostelium discoideum cDNA clone:ddv34d16, 3' ...  1259   0.0    1
(BJ341502) Dictyostelium discoideum cDNA clone:dda6o20, 3' e...  1251   0.0    1
(BJ344062) Dictyostelium discoideum cDNA clone:dda18f08, 3' ...  1235   0.0    1
(BJ432493) Dictyostelium discoideum cDNA clone:ddv18i20, 3' ...  1225   0.0    1
(BJ375727) Dictyostelium discoideum cDNA clone:ddc19a24, 3' ...  1221   0.0    1
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...   407   e-112
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   276   8e-73
AJ131045_1(AJ131045|pid:none) Cicer arietinum mRNA for protein p...   275   2e-72
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...   273   9e-72
AF196287_1(AF196287|pid:none) Medicago sativa subsp. x varia Ser...   272   2e-71
(Q9UT08) RecName: Full=Protein phosphatase PP2A regulatory subun...   272   2e-71
EU965946_1(EU965946|pid:none) Zea mays clone 290216 serine/threo...   271   3e-71
BT055991_1(BT055991|pid:none) Zea mays full-length cDNA clone ZM...   270   6e-71
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...   270   6e-71
T03684(T03684) phosphoprotein phosphatase (EC 3.1.3.16) 2A regul...   269   2e-70
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM744 is

5' end seq. ID AFM744F
5' end seq. 
>AFM744F.Seq
ATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTAT
TTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACT
TCAATCAATTGCAAAAGCGTTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTT
ACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGG
AAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACA
AATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAA
AATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTC
ATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATC
ATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATG
TCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTAXXXXXXXXXX
Length of 5' end seq. 591
3' end seq. ID AFM744Z
3' end seq. 
>AFM744Z.Seq
XXXXXXXXXXAATTGTTTTTACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAAT
ATCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCT
CTATTACCAGCTATCGTTGAATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATT
ATTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTT
GGTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACT
AATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATT
CCAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTT
TCAATTTCAACCCTTTCAACTGTTGTTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCT
TTATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACT
TTCCAAACCATTATTCCATTACTCGATAGCACAATTGNACAATCAAGAGTCAAACCATTA
CTCGTAAAACTTCATGAAGATACNTATAAAGATGTTAAATTCTATGCNAGCCAAGCACNC
CAATTATGTTAAATAAAAAAAAAAC
Length of 3' end seq. 685
Connected seq. ID AFM744P
Connected seq. 
>AFM744P.Seq
ATATATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTAT
TTTAATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACT
TCAATCAATTGCAAAAGCGTTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTT
ACAAGACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGG
AAATTTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACA
AATTTTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAA
AATTGCAAAAGAGATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTC
ATTATCAAAAGCAGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATC
ATATCCAAGAGCAAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATG
TCACGATGATACACCAATGGTTAAGAGAGCTGCTGCAACTA----------AATTGTTTT
TACATCTCTTAAAAGATGATTTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATC
AAGTAAGTAAAGTAATTGGTATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTG
AATTGGCTGAAGATCATCAATGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTT
TAGCTTCACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTT
GGTTAGGTGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAA
CCGAAGTATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTAC
ACTCTCATCCAAACTATCTCTATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAA
CTGTTGTTGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTT
CCGATAAAGTTCCAAATATTAGATTTAATGTAGCTAAAACTTTCCAAACCATTATTCCAT
TACTCGATAGCACAATTGNACAATCAAGAGTCAAACCATTACTCGTAAAACTTCATGAAG
ATACNTATAAAGATGTTAAATTCTATGCNAGCCAAGCACNCCAATTATGTTAAATAAAAA
AAAAAC
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -