VFJ247 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFJ247
Library	VF (Link to library)
Clone ID	VFJ247 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16382-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFJ2-B/VFJ247Q.Seq.d/
Representative seq. ID	VFJ247E (Link to Original site)
Representative DNA sequence	>VFJ247 (VFJ247Q) /CSM/VF/VFJ2-B/VFJ247Q.Seq.d/ TAAATCTGGTTTTTTTTAGATAACTGAAATTGTATTAGGTTTATAATATAATGTCGATTG TATCAATAAATAAATATATTAATGCATTTAAACCAAATACACAGATGTGTATTAAATTAT TATGTAGGTATGGATAAAATATCTTGGAATTAAATTAAATGGTTCAGCTATGTGTAAAGC TGGTTTTGCTGGTGACGATGCTCCATGTACAGTATTTCCATCAATTGTTGGTCGTCCAAG ACATACTGGTGTTATGGTTGGTATGTGTCAAAAAGGTTCATATGTTGGTGATGAAGCACA ATCAAAGAGAGGTATTTTAACACTTAAATATCCAATTGAACATGGTATCGTTACCAATTG GGACGATATGGAAAAGATCTGGCATCATACTTTTTACAATGAATTACGTGTTGCCCCAGA AGAACATCCAGTACTCTTGACTGAAGCACCATTGAATCCAAAAGCAAACAGAGAGAAAAT GACTCAAATCATGTTTGAAACATTCAATACACCAGCAATGTATGTTGCCATTCAAGCTGT ATTATCATTATATGCATCTGGTCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGT ATCACACACTGTTCCAATCTATGAAGGTTATGCATTACCACATGCCATCTTACGTTTAGA TTTAGCAGGTCGTGATCTCACTGATTACTTGATGAAAATTTTAACAGAACGTGGTTACTC ATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTAGCCTACGT TGCTTTAGATTTTGAAGCTGAAATGCAAACTGCCACCTCATCAGCATTAGAGAAATCATA TGAATTACCAGATGGTCAAGTTATCACCATTGGTAATGAACGTTTCCGTTGTCCAGAAGC TCTCTTCCAACCATCATTCTTGGGTATGGAATCAGCAGGTATTCATGAAACCACTTACAA TCCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAATGTAGTATTATC AGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAGGAATTAACTGCACT TGCACCATCAACAATGAAAATTAAAATCATCGCACCACCAGAACGTAAATACTCTGTTTG GATTGGTTCTATTTTAGCATCACTCTCAACTTTCCAACAAATAGGATTTCAAAAGAAGAA TATGAGAATCNGGTCCATCAATT
sequence update	2001.11.24
Translated Amino Acid sequence	ksgffiteivlglynvdcinkiycitkytdvyiim*VWIKYLGIKLNGSAMCKA GFAGDDAPCTVFPSIVGRPRHTGVMVGMCQKGSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV LSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS FTTTAEREIVRDIKEKLAYVALDFEAEMQTATSSALEKSYELPDGQVITIGNERFRCPEA LFQPSFLGMESAGIHETTYNPIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTAL APSTMKIKIIAPPERKYSVWIGSILASLSTFQQIGFQKKNMRIXSIN
Translated Amino Acid sequence (All Frames)	Frame A: iwffldnncirfiicrlyqinilmhlnqihrcvlnyyvgmdkiswnikwfsyvs wfcwrcsmysisincwssktywcygwyvskrficwstikeryfntisntwyryql grygkdlasyflqitccprrtsstldstieskskqrendsnhvniqytsnvcchssc iiiiciwsyhwyrygfrwcithcsnlrlcittchltfrfsrsshlldenfnrtwll ihnnckrnrryreislrcfrfsnanchlisireiiitrwssyhhw*tfplsrs slptiilgygisrysnhlqsnhemcysrfiwcsiirwynyvprycsyeginct ctinnennhrttrtilcldwfyfsitlnfptnriskeeyenxvhq Frame B: ksgffiteivlglynvdcinkiycitkytdvyiimVWIKYLGIKLNGSAMCKA GFAGDDAPCTVFPSIVGRPRHTGVMVGMCQKGSYVGDEAQSKRGILTLKYPIEHGIVTNW DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV LSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS FTTTAEREIVRDIKEKLAYVALDFEAEMQTATSSALEKSYELPDGQVITIGNERFRCPEA LFQPSFLGMESAGIHETTYNPIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTAL APSTMKIKIIAPPERKYSVWIGSILASLSTFQQIGFQKKNMRIXSIN Frame C: nlvffrlklyvynimsivsinkyinafkpntqmcikllcrygnilelnmvqlcvkl vllvtmlhvqyfhqllvvqdilvlwlvcvkkvhmlvmkhnqrevfhlniqlnmvslpig tiwkrsgiilftmnyvlpqkniqyslkhhiqkqterklksclkhsihqqcmlpfkly yhymhlvvplvslwiqvmvyhtlfqsmkvmhyhmpsyviqvvislitkfqnvvth sqqllkeksleilkrnptllilklkcklpphqhrnhmnyqmvklsplvmnvsvvqkl ssnhhswvwnqqvfmkpltiqsnvmlifvkiymvmyyqvvqlcsqvllivirnlhl hhqqklksshhqnvntlfglvlfhhsqlsnkdfkrri*esgpsi
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFJ247 (VFJ247Q) /CSM/VF/VFJ2-B/VFJ247Q.Seq.d/ 2385 0.0 VFD623 (VFD623Q) /CSM/VF/VFD6-A/VFD623Q.Seq.d/ 2357 0.0 AFG203 (AFG203Q) /CSM/AF/AFG2-A/AFG203Q.Seq.d/ 1479 0.0 AFI479 (AFI479Q) /CSM/AF/AFI4-D/AFI479Q.Seq.d/ 1475 0.0 SFD319 (SFD319Q) /CSM/SF/SFD3-A/SFD319Q.Seq.d/ 1471 0.0 CFC565 (CFC565Q) /CSM/CF/CFC5-C/CFC565Q.Seq.d/ 1471 0.0 SFH143 (SFH143Q) /CSM/SF/SFH1-B/SFH143Q.Seq.d/ 1469 0.0 SFD813 (SFD813Q) /CSM/SF/SFD8-A/SFD813Q.Seq.d/ 1469 0.0 VFI283 (VFI283Q) /CSM/VF/VFI2-D/VFI283Q.Seq.d/ 1465 0.0 SFL261 (SFL261Q) /CSM/SF/SFL2-C/SFL261Q.Seq.d/ 1465 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ432682) Dictyostelium discoideum cDNA clone:ddv19m12, 3' ... 1437 0.0 1 (BJ430659) Dictyostelium discoideum cDNA clone:ddv8m06, 3' e... 1402 0.0 1 (BJ414513) Dictyostelium discoideum cDNA clone:ddv19m12, 5' ... 1191 0.0 1 (BJ412373) Dictyostelium discoideum cDNA clone:ddv8m06, 5' e... 1152 0.0 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 948 0.0 5 (X03283) Dictyostelium discoideum gene for actin A3-S1. 866 0.0 5 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 846 0.0 5 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 819 0.0 5 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 791 0.0 5 (AU284282) Dictyostelium discoideum gamete cDNA clone:FC-AH1... 791 0.0 5
dna update	2009. 1.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 661 0.0 (P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 658 0.0 ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 657 0.0 (Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305\|... 657 0.0 B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 655 0.0 X03282_1(X03282\|pid:none) dictyostelium discoideum gene for acti... 654 0.0 AY294152_1(AY294152\|pid:none) Mayorella sp. JJP-2003 actin mRNA,... 653 0.0 AY294153_1(AY294153\|pid:none) Platyamoeba placida actin mRNA, pa... 652 0.0 AY294154_1(AY294154\|pid:none) Thecamoeba similis actin mRNA, com... 650 0.0 (P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 649 0.0
protein update	2009. 7.11
PSORT	psg: 0.73 gvh: 0.38 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for VFJ247 is cyt
5' end seq. ID	VFJ247F
5' end seq.	>VFJ247F.Seq TAAATCTGGTTTTTTTTAGATAACTGAAATTGTATTAGGTTTATAATATAATGTCGATTG TATCAATAAATAAATATATTAATGCATTTAAACCAAATACACAGATGTGTATTAAATTAT TATGTAGGTATGGATAAAATATCTTGGAATTAAATTAAATGGTTCAGCTATGTGTAAAGC TGGTTTTGCTGGTGACGATGCTCCATGTACAGTATTTCCATCAATTGTTGGTCGTCCAAG ACATACTGGTGTTATGGTTGGTATGTGTCAAAAAGGTTCATATGTTGGTGATGAAGCACA ATCAAAGAGAGGTATTTTAACACTTAAATATCCAATTGAACATGGTATCGTTACCAATTG GGACGATATGGAAAAGATCTGGCATCATACTTTTTACAATGAATTACGTGTTGCCCCAGA AGAACATCCAGTACTCTTGACTGAAGCACCATTGAATCCAAAAGCAAACAGAGAGAAAAT GACTCAAATCATGTTTGAAACATTCAATACACCAGCAATGTATGTTGCCATTCAAGCTGT ATTATCATTATATGCATCTGGTCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGT ATCACACACTGTTCCAATNNNNNNNNNN
Length of 5' end seq.	628
3' end seq. ID	VFJ247Z
3' end seq.	>VFJ247Z.Seq NNNNNNNNNNTGAAACATTCAATACACCAGCAATGTATGTTGCCATTCAAGCTGTATTAT CATTATATGCATCTGGTCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGTATCAC ACACTGTTCCAATCTATGAAGGTTATGCATTACCACATGCCATCTTACGTTTAGATTTAG CAGGTCGTGATCTCACTGATTACTTGATGAAAATTTTAACAGAACGTGGTTACTCATTCA CAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTAGCCTACGTTGCTT TAGATTTTGAAGCTGAAATGCAAACTGCCACCTCATCAGCATTAGAGAAATCATATGAAT TACCAGATGGTCAAGTTATCACCATTGGTAATGAACGTTTCCGTTGTCCAGAAGCTCTCT TCCAACCATCATTCTTGGGTATGGAATCAGCAGGTATTCATGAAACCACTTACAATCCAA TCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAATGTAGTATTATCAGGTG GTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAGGAATTAACTGCACTTGCAC CATCAACAATGAAAATTAAAATCATCGCACCACCAGAACGTAAATACTCTGTTTGGATTG GTTCTATTTTAGCATCACTCTCAACTTTCCAACAAATAGGATTTCAAAAGAAGAATATGA GAATCNGGTCCATCAATT
Length of 3' end seq.	738
Connected seq. ID	VFJ247P
Connected seq.	>VFJ247P.Seq TAAATCTGGTTTTTTTTAGATAACTGAAATTGTATTAGGTTTATAATATAATGTCGATTG TATCAATAAATAAATATATTAATGCATTTAAACCAAATACACAGATGTGTATTAAATTAT TATGTAGGTATGGATAAAATATCTTGGAATTAAATTAAATGGTTCAGCTATGTGTAAAGC TGGTTTTGCTGGTGACGATGCTCCATGTACAGTATTTCCATCAATTGTTGGTCGTCCAAG ACATACTGGTGTTATGGTTGGTATGTGTCAAAAAGGTTCATATGTTGGTGATGAAGCACA ATCAAAGAGAGGTATTTTAACACTTAAATATCCAATTGAACATGGTATCGTTACCAATTG GGACGATATGGAAAAGATCTGGCATCATACTTTTTACAATGAATTACGTGTTGCCCCAGA AGAACATCCAGTACTCTTGACTGAAGCACCATTGAATCCAAAAGCAAACAGAGAGAAAAT GACTCAAATCATGTTTGAAACATTCAATACACCAGCAATGTATGTTGCCATTCAAGCTGT ATTATCATTATATGCATCTGGTCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGT ATCACACACTGTTCCAAT----------TGAAACATTCAATACACCAGCAATGTATGTTG CCATTCAAGCTGTATTATCATTATATGCATCTGGTCGTACCACTGGTATCGTTATGGATT CAGGTGATGGTGTATCACACACTGTTCCAATCTATGAAGGTTATGCATTACCACATGCCA TCTTACGTTTAGATTTAGCAGGTCGTGATCTCACTGATTACTTGATGAAAATTTTAACAG AACGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGA AATTAGCCTACGTTGCTTTAGATTTTGAAGCTGAAATGCAAACTGCCACCTCATCAGCAT TAGAGAAATCATATGAATTACCAGATGGTCAAGTTATCACCATTGGTAATGAACGTTTCC GTTGTCCAGAAGCTCTCTTCCAACCATCATTCTTGGGTATGGAATCAGCAGGTATTCATG AAACCACTTACAATCCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTA ATGTAGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAGG AATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATCATCGCACCACCAGAACGTA AATACTCTGTTTGGATTGGTTCTATTTTAGCATCACTCTCAACTTTCCAACAAATAGGAT TTCAAAAGAAGAATATGAGAATCNGGTCCATCAATT
Length of connected seq.	1346
Full length Seq ID	VFJ247E
Full length Seq.	>VFJ247E.Seq TAAATCTGGTTTTTTTTAGATAACTGAAATTGTATTAGGTTTATAATATAATGTCGATTG TATCAATAAATAAATATATTAATGCATTTAAACCAAATACACAGATGTGTATTAAATTAT TATGTAGGTATGGATAAAATATCTTGGAATTAAATTAAATGGTTCAGCTATGTGTAAAGC TGGTTTTGCTGGTGACGATGCTCCATGTACAGTATTTCCATCAATTGTTGGTCGTCCAAG ACATACTGGTGTTATGGTTGGTATGTGTCAAAAAGGTTCATATGTTGGTGATGAAGCACA ATCAAAGAGAGGTATTTTAACACTTAAATATCCAATTGAACATGGTATCGTTACCAATTG GGACGATATGGAAAAGATCTGGCATCATACTTTTTACAATGAATTACGTGTTGCCCCAGA AGAACATCCAGTACTCTTGACTGAAGCACCATTGAATCCAAAAGCAAACAGAGAGAAAAT GACTCAAATCATGTTTGAAACATTCAATACACCAGCAATGTATGTTGCCATTCAAGCTGT ATTATCATTATATGCATCTGGTCGTACCACTGGTATCGTTATGGATTCAGGTGATGGTGT ATCACACACTGTTCCAATCTATGAAGGTTATGCATTACCACATGCCATCTTACGTTTAGA TTTAGCAGGTCGTGATCTCACTGATTACTTGATGAAAATTTTAACAGAACGTGGTTACTC ATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTAGCCTACGT TGCTTTAGATTTTGAAGCTGAAATGCAAACTGCCACCTCATCAGCATTAGAGAAATCATA TGAATTACCAGATGGTCAAGTTATCACCATTGGTAATGAACGTTTCCGTTGTCCAGAAGC TCTCTTCCAACCATCATTCTTGGGTATGGAATCAGCAGGTATTCATGAAACCACTTACAA TCCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAATGTAGTATTATC AGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAGGAATTAACTGCACT TGCACCATCAACAATGAAAATTAAAATCATCGCACCACCAGAACGTAAATACTCTGTTTG GATTGGTTCTATTTTAGCATCACTCTCAACTTTCCAACAAATAGGATTTCAAAAGAAGAA TATGAGAATCNGGTCCATCAATT
Length of full length seq.	1223

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas