VFJ238
Library VF
(Link to library)
Clone ID VFJ238
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VFJ238E
(Link to Original site)
Representative DNA sequence
>VFJ238 (VFJ238Q) /CSM/VF/VFJ2-B/VFJ238Q.Seq.d/
GTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTAC
TGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACA
AGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTG
TTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAA
TGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAA
ATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATT
ATCTGGTGGTGCTGCTGGTGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCG
TACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAA
CTGTATCTCTTCAATCTACAANANAGACGGTTTAATCGGTTTATANCCGTGGTTTTGGTG
TATCTGTCGGAGGTATCTTTGTCTACANAGCTGCTTTCTTTGGTGGTTACGATACTGCTA
AAGGAATTTTATTAGGTGAAAACAACAANAAAGCTTCATTNTGGGCTTCATGGGGNATCG
CNCAAGTTGTCNCTACCATCGCTGGTGTAGTCAGCTACCCATTCGANACTGTTCGTAAAA
NAATGATGANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGG
TAAANATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGTGCTTTANCAAATGCCA
TCANAGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCAAAAACTTATGG
GTTTTGAAGGTGGTGTTGGTTCTGAATAANAAAANCCNCAAGAAAAAAAACAGGATTTTA
ACTAAAAAAAAAAACAAACANGGGATATAAAA
sequence update 2001.11.24
Translated Amino Acid sequence
SNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAADKQYKGIVDC
FVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFFIGNLL
SGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYXXDGLIGLXPWFWC
ICRRYLCLXSCFLWWLRYC*rnfir*kqqxsfixgfmgxrxscxyhrwcsqlpirxcs*x
ndxaxrsx*xslfkxlgllgkxcxp*rxncllqrcfxkchxrxrwxxsfsyl**xpktyg
f*rwcwf*ixkxxrkktgf*lkkktnxgyk


Translated Amino Acid sequence (All Frames)
Frame A:
v*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfnsncc**tiqryrrl
fc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*rkpnqifhw*fi
iwwccwcnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlqxrrfnrfixvvlv
ylsevslstxllslvvtillkefy*vkttxklhxglhgxsxklslpslv*sathsxlfvk
x**xxpvxlxffiqalgivg*xlppvkxqlpsskvlxqmpsxxqvxx*f*lfmmkxknlw
vlkvvlvlnxkxxkkknriltkkknkxgi*


Frame B:
SNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAADKQYKGIVDC
FVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFFIGNLL
SGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYXXDGLIGLXPWFWC
ICRRYLCLXSCFLWWLRYC*rnfir*kqqxsfixgfmgxrxscxyhrwcsqlpirxcs*x
ndxaxrsx*xslfkxlgllgkxcxp*rxncllqrcfxkchxrxrwxxsfsyl**xpktyg
f*rwcwf*ixkxxrkktgf*lkkktnxgyk


Frame C:
ltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllqlklllinntkvssiv
llefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllkktqpnfslviyy
lvvllvqphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqstxxtv*svyxrgfgv
svggifvyxaaffggydtakgillgennxkasxwaswgiaqvvxtiagvvsypfxtvrkx
mmxqxgraxilyssxwdcwvxiaxregptaffkgalxnaixgsggalvlviydexqklmg
feggvgse*xxpqekkqdfn*kkkqtxdik


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFJ238 (VFJ238Q) /CSM/VF/VFJ2-B/VFJ238Q.Seq.d/ 1701 0.0
VFL424 (VFL424Q) /CSM/VF/VFL4-A/VFL424Q.Seq.d/ 1693 0.0
FCL-AA23 (FCL-AA23Q) /CSM/FCL/FCL-AA/FCL-AA23Q.Seq.d/ 1683 0.0
SLH708 (SLH708Q) /CSM/SL/SLH7-A/SLH708Q.Seq.d/ 1669 0.0
VFL711 (VFL711Q) /CSM/VF/VFL7-A/VFL711Q.Seq.d/ 1667 0.0
VFB604 (VFB604Q) /CSM/VF/VFB6-A/VFB604Q.Seq.d/ 1661 0.0
VFM349 (VFM349Q) /CSM/VF/VFM3-C/VFM349Q.Seq.d/ 1647 0.0
VHC420 (VHC420Q) /CSM/VH/VHC4-A/VHC420Q.Seq.d/ 1643 0.0
VFK227 (VFK227Q) /CSM/VF/VFK2-B/VFK227Q.Seq.d/ 1631 0.0
VSJ705 (VSJ705Q) /CSM/VS/VSJ7-A/VSJ705Q.Seq.d/ 1629 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ415642) Dictyostelium discoideum cDNA clone:ddv23p06, 5' ... 1213 0.0 1
(BJ416786) Dictyostelium discoideum cDNA clone:ddv27e08, 5' ... 1211 0.0 1
(BJ422203) Dictyostelium discoideum cDNA clone:ddv45o04, 5' ... 1166 0.0 1
(BJ414555) Dictyostelium discoideum cDNA clone:ddv19h15, 5' ... 1164 0.0 1
(BJ414503) Dictyostelium discoideum cDNA clone:ddv19k10, 5' ... 1164 0.0 1
(BJ413069) Dictyostelium discoideum cDNA clone:ddv14g05, 5' ... 1164 0.0 1
(BJ410835) Dictyostelium discoideum cDNA clone:ddv2e04, 5' e... 1156 0.0 1
(BJ411079) Dictyostelium discoideum cDNA clone:ddv2m23, 5' e... 1132 0.0 1
(BJ425104) Dictyostelium discoideum cDNA clone:ddv54l15, 5' ... 1124 0.0 1
(BJ389552) Dictyostelium discoideum cDNA clone:dds19n05, 5' ... 1124 0.0 1
dna update 2009. 1.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr... 338 e-155
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03... 255 e-102
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD... 233 2e-94
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t... 232 2e-94
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra... 233 4e-94
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran... 237 7e-94
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ... 239 9e-94
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit... 228 2e-93
AY227000_1(AY227000|pid:none) Bombyx mori ADP/ATP translocase (A... 231 3e-93
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden... 235 3e-93
protein update 2009. 7.11
PSORT

psg: 0.68 gvh: 0.58 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for VFJ238 is cyt

5' end seq. ID VFJ238F
5' end seq.
>VFJ238F.Seq
GTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTAC
TGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACA
AGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTG
TTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAA
TGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAA
ATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATT
ATCTGGTGGTGCTGCTGGTGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCG
TACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAA
CTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCCGTGGTTTTGGTG
TATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACGATACTGCTN
NNNNNNNNN
Length of 5' end seq. 609
3' end seq. ID VFJ238Z
3' end seq.
>VFJ238Z.Seq
NNNNNNNNNNTGCTGGTGCAACCTCATTACTNTTTGTTTACCCATTANATTTTGCCCGTA
CTCGTTTANCTGCTNATGTTGGNACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACT
GTATNTNTTCAATNTACAAAAAANACGGTTTAATCGGTTTAAACCGTGGTTTTGGTGTAT
CTGTCGGAGGTATNTTTGTNTACAAANCTGCTTTNTTTGGTGGTTACGANACTGCTAAAG
GAATTTTATTAGGTGAAAACAACAANAAAGCTTCATTNTGGGCTTCATGGGGNATCGCNC
AAGTTGTCNCTACCATCGCTGGTGTAGTCAGCTACCCATTCGANACTGTTCGTAAAANAA
TGATGANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGGTAA
ANATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGTGCTTTANCAAATGCCATCA
NAGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCAAAAACTTATGGGTT
TTGAAGGTGGTGTTGGTTCTGAATAANAAAANCCNCAAGAAAAAAAACAGGATTTTAACT
AAAAAAAAAAACAAACANGGGATATAAAA
Length of 3' end seq. 629
Connected seq. ID VFJ238P
Connected seq.
>VFJ238P.Seq
GTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTAC
TGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACA
AGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTG
TTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAA
TGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAA
ATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATT
ATCTGGTGGTGCTGCTGGTGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCG
TACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAA
CTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCCGTGGTTTTGGTG
TATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACGATACTGCT-
---------TGCTGGTGCAACCTCATTACTNTTTGTTTACCCATTANATTTTGCCCGTAC
TCGTTTANCTGCTNATGTTGGNACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTG
TATNTNTTCAATNTACAAAAAANACGGTTTAATCGGTTTAAACCGTGGTTTTGGTGTATC
TGTCGGAGGTATNTTTGTNTACAAANCTGCTTTNTTTGGTGGTTACGANACTGCTAAAGG
AATTTTATTAGGTGAAAACAACAANAAAGCTTCATTNTGGGCTTCATGGGGNATCGCNCA
AGTTGTCNCTACCATCGCTGGTGTAGTCAGCTACCCATTCGANACTGTTCGTAAAANAAT
GATGANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGGTAAA
NATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGTGCTTTANCAAATGCCATCAN
AGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCAAAAACTTATGGGTTT
TGAAGGTGGTGTTGGTTCTGAATAANAAAANCCNCAAGAAAAAAAACAGGATTTTAACTA
AAAAAAAAAACAAACANGGGATATAAAA
Length of connected seq. 1218
Full length Seq ID VFJ238E
Full length Seq.
>VFJ238E.Seq
GTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTAC
TGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACA
AGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTG
TTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAA
TGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAA
ATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATT
ATCTGGTGGTGCTGCTGGTGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCG
TACTCGTTTAGCTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAA
CTGTATCTCTTCAATCTACAANANAGACGGTTTAATCGGTTTATANCCGTGGTTTTGGTG
TATCTGTCGGAGGTATCTTTGTCTACANAGCTGCTTTCTTTGGTGGTTACGATACTGCTA
AAGGAATTTTATTAGGTGAAAACAACAANAAAGCTTCATTNTGGGCTTCATGGGGNATCG
CNCAAGTTGTCNCTACCATCGCTGGTGTAGTCAGCTACCCATTCGANACTGTTCGTAAAA
NAATGATGANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGG
TAAANATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGTGCTTTANCAAATGCCA
TCANAGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCAAAAACTTATGG
GTTTTGAAGGTGGTGTTGGTTCTGAATAANAAAANCCNCAAGAAAAAAAACAGGATTTTA
ACTAAAAAAAAAAACAAACANGGGATATAAAA
Length of full length seq. 992