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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM729
Library AF
(Link to library)
Clone ID AFM729
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID AFM729P
(Link to Original site)
Representative DNA sequence 
>AFM729 (AFM729Q) /CSM/AF/AFM7-B/AFM729Q.Seq.d/
AATAAAACTACTTTCAAAAAAATTATATATAAATAATAACAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAATTAATTAATAATCATAAAAATTAATTAAAAAAAT
GATTTTAATCTATAAAAATGATTTTAATATAATTAATTTTAAAAAACCGACTCAATTATT
TAATAAAATTATATTTTTATTAATTTTAATTATTTCATTAATTATACCAATTAATCAGTG
TCAAAGTATAAATACAAATATAAATACAAATAATAAAGAAAATAGACCAAAATTAAAATT
TAATAAAAATGGTAAATTCAAAATTGTTCAATTTACAGATCTCCATTATGGAGAAGCTCA
AGAATATGATATTTTAAATTTAATTGTACAAGAAAATGTAATTGAAAAAGAATTACCAGA
TTTTGTAATGCTATCAGGTGATATGTTTAGTGCATATAATATAATGACAAGTGAAGAGTA
TTTAGTATTATGGGAAATGGTGXXXXXXXXXXATTTATTCAAGTGATGACACAAGTTCAT
CAATTTCATCGTCAATATTCATATTTGACAGTGACTTGCCACAATGCAATGAAAGTGGTT
CGTGGGGGTGTGTAGATGCGAAGCAGGTGGAATGGTATGAAAAAGAGTCAGACCACCATG
GGTGGTGGTGGTGGTGGTAATATATCAAGTATAGCATTTGTACATATACCACCAGTTGAG
GTGATTGATTTATGGAATGAGAATGTGGTCAAGGGTGATTTCGGGGATAAGGAATCCTGT
TGTTATTATACAGATGAATCTGAATTTGTTTCAACTATGGTCAGACGTGGTGATATTAAA
GGCTTGTATTTCGGCCNCGATCATAAAAATGATTTTCATGGGGTATATCAAAACTCTGTT
GAATTGGGGTATGGTAGAAAATCTGGATACGGTTCATATAATCCAAAATATTTAGAAGGT
GCTAGAATCATTGAATTGACTGAACAACCTTTTTCAATTAAAACTTGGATTAGCAAATGT
AAATGGAGAATTGGAAACNCAACAAACTCACTTATCCAAATCCGTATAGTCAATCACCAC
GTTAGNTGTTGCACTCATGAAGATCACCAAAATGAATCATCTTGGACATTATTCTTAATT
GGTTANTGCTCAACTGTTATTATTGTTTCAATTATATTTTATATTAAACGTTCAAAATCC
AATCAAAATCA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ikllskklyinnnk*ink*ink*ink*iin**s*KLIKKMILIYKNDFNIINFKKPTQLF
NKIIFLLILIISLIIPINQCQSINTNINTNNKENRPKLKFNKNGKFKIVQFTDLHYGEAQ
EYDILNLIVQENVIEKELPDFVMLSGDMFSAYNIMTSEEYLVLWEMV---

---IYSSDDTSSSISSSIFIFDSDLPQCNESGSWGCVDAKQVEWYEKESDHHGWWWWW*y
ikysictytts*gd*fme*ecgqg*frg*gillllyr*i*icfnygqtw*y*rlvfrprs
*k*fswgisklc*igvw*kiwirfi*skifrrc*nh*id*ttffn*nld*qm*menwkxn
kltypnpysqspr*xlhs*rspk*iildiilnwlxlncyycfnyily*tfkiqsks
Translated Amino Acid sequence (All Frames) 
Frame A:
nkttfkkiiyk**qink*ink*ink*inn*liiikin*kndfnl*k*f*yn*f*ktdsii
**nyifinfnyfinytn*svskykykykyk**rk*tkiki**kw*iqncsiyrsplwrss
ri*yfkfnctrkcn*kritrfcnair*yv*ci*yndk*rvfsimgng---

---IYSSDDTSSSISSSIFIFDSDLPQCNESGSWGCVDAKQVEWYEKESDHHGWWWWW*y
ikysictytts*gd*fme*ecgqg*frg*gillllyr*i*icfnygqtw*y*rlvfrprs
*k*fswgisklc*igvw*kiwirfi*skifrrc*nh*id*ttffn*nld*qm*menwkxn
kltypnpysqspr*xlhs*rspk*iildiilnwlxlncyycfnyily*tfkiqsks

Frame B:
ikllskklyinnnk*ink*ink*ink*iin**s*KLIKKMILIYKNDFNIINFKKPTQLF
NKIIFLLILIISLIIPINQCQSINTNINTNNKENRPKLKFNKNGKFKIVQFTDLHYGEAQ
EYDILNLIVQENVIEKELPDFVMLSGDMFSAYNIMTSEEYLVLWEMV---

---fiqvmtqvhqfhrqysyltvtchnamkvvrggv*mrsrwngmkksqttmggggggni
ssiafvhippvevidlwnenvvkgdfgdkesccyytdesefvstmvrrgdikglyfgxdh
kndfhgvyqnsvelgygrksgygsynpkylegariielteqpfsiktwiskckwrignxt
nsliqirivnhhvxccthedhqnesswtlfligxcstviivsiifyikrsksnqn

Frame C:
*nyfqknyi*iitnk*ink*ink*ink*linnhkn*lkk*f*sikmili*lilknrlnyl
iklyfy*f*lfh*lyqlisvkv*iqi*iqiikkidqn*nlikmvnsklfnlqisimeklk
nmif*i*lykkm*lkknyqil*cyqviclvhii**qvksi*yygkw---

---lfk**hkfinfivnihi*q*latmq*kwfvgvcrceaggmv*krvrppwvvvvvviy
qv*hlyiyhqlr*liygmrmwsrvisgirnpvviiqmnlnlfqlwsdvvilkacisaxii
kmifmgyiktllnwgmvenldtvhiiqni*kvlesln*lnnlfqlklglanvngeletqq
thlsksv*sittlxvalmkitkmnhlghys*lvxaqllllfqlyfilnvqnpiki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM729 (AFM729Q) /CSM/AF/AFM7-B/AFM729Q.Seq.d/                       1033   0.0
AFL659 (AFL659Q) /CSM/AF/AFL6-C/AFL659Q.Seq.d/                        353   4e-96
CHD540 (CHD540Q) /CSM/CH/CHD5-B/CHD540Q.Seq.d/                         48   3e-04
CFE339 (CFE339Q) /CSM/CF/CFE3-B/CFE339Q.Seq.d/                         48   3e-04
CHC574 (CHC574Q) /CSM/CH/CHC5-D/CHC574Q.Seq.d/                         40   0.077
SLI627 (SLI627Q) /CSM/SL/SLI6-B/SLI627Q.Seq.d/                         38   0.31
SLF219 (SLF219Q) /CSM/SL/SLF2-A/SLF219Q.Seq.d/                         38   0.31
AFM161 (AFM161Q) /CSM/AF/AFM1-C/AFM161Q.Seq.d/                         38   0.31
SLK512 (SLK512Q) /CSM/SL/SLK5-A/SLK512Q.Seq.d/                         36   1.2
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/                36   1.2
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347188) Dictyostelium discoideum cDNA clone:dda26j07, 3' ...  1033   0.0    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   658   0.0    5
(BJ329808) Dictyostelium discoideum cDNA clone:dda26j07, 5' ...   349   2e-91  1
(BJ329320) Dictyostelium discoideum cDNA clone:dda24e16, 5' ...   349   2e-91  1
(BJ378186) Dictyostelium discoideum cDNA clone:ddc27c19, 3' ...    40   0.042  2
(FI244407) CccaBb004-H23JF CccABb Cajanus cajan genomic clon...    50   0.20   1
(FI237621) CccaBb025-A5JR CccABb Cajanus cajan genomic clone...    50   0.20   1
(EX614958) 255388899 Pea aphid whole body normalized full le...    50   0.20   1
(EJ121178) 1092343373528 Global-Ocean-Sampling_GS-27-01-01-1...    38   0.57   2
(DT774000) 126361382 TH1 Tribolium castaneum cDNA clone 97E2...    40   0.79   2
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_49(AC116956|pid:none) Dictyostelium discoideum chromoso...   307   1e-94
AE001437_1935(AE001437|pid:none) Clostridium acetobutylicum ATCC...    66   2e-11
AE001437_2763(AE001437|pid:none) Clostridium acetobutylicum ATCC...    67   9e-10
AP006841_1757(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    62   3e-08
CP000721_867(CP000721|pid:none) Clostridium beijerinckii NCIMB 8...    61   7e-08
CP000140_2943(CP000140|pid:none) Parabacteroides distasonis ATCC...    57   1e-06
AB023042_9(AB023042|pid:none) Arabidopsis thaliana genomic DNA, ...    55   4e-06
CR931997_1417(CR931997|pid:none) Corynebacterium jeikeium K411 c...    55   4e-06
EU961980_1(EU961980|pid:none) Zea mays clone 239444 phosphatase ...    55   6e-06
AE015929_1104(AE015929|pid:none) Staphylococcus epidermidis ATCC...    54   8e-06
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM729 is

5' end seq. ID AFM729F
5' end seq. 
>AFM729F.Seq
AATAAAACTACTTTCAAAAAAATTATATATAAATAATAACAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAATTAATTAATAATCATAAAAATTAATTAAAAAAAT
GATTTTAATCTATAAAAATGATTTTAATATAATTAATTTTAAAAAACCGACTCAATTATT
TAATAAAATTATATTTTTATTAATTTTAATTATTTCATTAATTATACCAATTAATCAGTG
TCAAAGTATAAATACAAATATAAATACAAATAATAAAGAAAATAGACCAAAATTAAAATT
TAATAAAAATGGTAAATTCAAAATTGTTCAATTTACAGATCTCCATTATGGAGAAGCTCA
AGAATATGATATTTTAAATTTAATTGTACAAGAAAATGTAATTGAAAAAGAATTACCAGA
TTTTGTAATGCTATCAGGTGATATGTTTAGTGCATATAATATAATGACAAGTGAAGAGTA
TTTAGTATTATGGGAAATGGTGXXXXXXXXXX
Length of 5' end seq. 512
3' end seq. ID AFM729Z
3' end seq. 
>AFM729Z.Seq
XXXXXXXXXXATTTATTCAAGTGATGACACAAGTTCATCAATTTCATCGTCAATATTCAT
ATTTGACAGTGACTTGCCACAATGCAATGAAAGTGGTTCGTGGGGGTGTGTAGATGCGAA
GCAGGTGGAATGGTATGAAAAAGAGTCAGACCACCATGGGTGGTGGTGGTGGTGGTAATA
TATCAAGTATAGCATTTGTACATATACCACCAGTTGAGGTGATTGATTTATGGAATGAGA
ATGTGGTCAAGGGTGATTTCGGGGATAAGGAATCCTGTTGTTATTATACAGATGAATCTG
AATTTGTTTCAACTATGGTCAGACGTGGTGATATTAAAGGCTTGTATTTCGGCCNCGATC
ATAAAAATGATTTTCATGGGGTATATCAAAACTCTGTTGAATTGGGGTATGGTAGAAAAT
CTGGATACGGTTCATATAATCCAAAATATTTAGAAGGTGCTAGAATCATTGAATTGACTG
AACAACCTTTTTCAATTAAAACTTGGATTAGCAAATGTAAATGGAGAATTGGAAACNCAA
CAAACTCACTTATCCAAATCCGTATAGTCAATCACCACGTTAGNTGTTGCACTCATGAAG
ATCACCAAAATGAATCATCTTGGACATTATTCTTAATTGGTTANTGCTCAACTGTTATTA
TTGTTTCAATTATATTTTATATTAAACGTTCAAAATCCAATCAAAATCA
Length of 3' end seq. 709
Connected seq. ID AFM729P
Connected seq. 
>AFM729P.Seq
AATAAAACTACTTTCAAAAAAATTATATATAAATAATAACAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAATTAATTAATAATCATAAAAATTAATTAAAAAAAT
GATTTTAATCTATAAAAATGATTTTAATATAATTAATTTTAAAAAACCGACTCAATTATT
TAATAAAATTATATTTTTATTAATTTTAATTATTTCATTAATTATACCAATTAATCAGTG
TCAAAGTATAAATACAAATATAAATACAAATAATAAAGAAAATAGACCAAAATTAAAATT
TAATAAAAATGGTAAATTCAAAATTGTTCAATTTACAGATCTCCATTATGGAGAAGCTCA
AGAATATGATATTTTAAATTTAATTGTACAAGAAAATGTAATTGAAAAAGAATTACCAGA
TTTTGTAATGCTATCAGGTGATATGTTTAGTGCATATAATATAATGACAAGTGAAGAGTA
TTTAGTATTATGGGAAATGGTG----------ATTTATTCAAGTGATGACACAAGTTCAT
CAATTTCATCGTCAATATTCATATTTGACAGTGACTTGCCACAATGCAATGAAAGTGGTT
CGTGGGGGTGTGTAGATGCGAAGCAGGTGGAATGGTATGAAAAAGAGTCAGACCACCATG
GGTGGTGGTGGTGGTGGTAATATATCAAGTATAGCATTTGTACATATACCACCAGTTGAG
GTGATTGATTTATGGAATGAGAATGTGGTCAAGGGTGATTTCGGGGATAAGGAATCCTGT
TGTTATTATACAGATGAATCTGAATTTGTTTCAACTATGGTCAGACGTGGTGATATTAAA
GGCTTGTATTTCGGCCNCGATCATAAAAATGATTTTCATGGGGTATATCAAAACTCTGTT
GAATTGGGGTATGGTAGAAAATCTGGATACGGTTCATATAATCCAAAATATTTAGAAGGT
GCTAGAATCATTGAATTGACTGAACAACCTTTTTCAATTAAAACTTGGATTAGCAAATGT
AAATGGAGAATTGGAAACNCAACAAACTCACTTATCCAAATCCGTATAGTCAATCACCAC
GTTAGNTGTTGCACTCATGAAGATCACCAAAATGAATCATCTTGGACATTATTCTTAATT
GGTTANTGCTCAACTGTTATTATTGTTTCAATTATATTTTATATTAAACGTTCAAAATCC
AATCAAAATCA
Length of connected seq. 1201
Full length Seq ID -
Full length Seq. -
Length of full length seq. -