VFJ234
Library VF
(Link to library)
Clone ID VFJ234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16219-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFJ234 (VFJ234Q) /CSM/VF/VFJ2-B/VFJ234Q.Seq.d/
XXXXXXXXXXGANNCTGGTAATCTTAAAATCAATTTAGTATACTCTNAAAATCNAGNTCA
TANCAATAAAGNAATCATTGNAAAATATTCAACTCAACATGTTGATCAAG
sequence update 2001.11.22
Translated Amino Acid sequence
---XGNLKINLVYSXNXXHXNKXIIXKYSTQHVDQ


Translated Amino Acid sequence (All Frames)
Frame A:
---xlvilksi*ytlkixxixikxslxniqlnmlik


Frame B:
---xw*s*nqfsilxksxsxq*xnhxkifnstc*s


Frame C:
---XGNLKINLVYSXNXXHXNKXIIXKYSTQHVDQ


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD112 (VSD112Q) /CSM/VS/VSD1-A/VSD112Q.Seq.d/ 155 1e-37
VSB536 (VSB536Q) /CSM/VS/VSB5-B/VSB536Q.Seq.d/ 155 1e-37
VFN344 (VFN344Q) /CSM/VF/VFN3-B/VFN344Q.Seq.d/ 155 1e-37
VFM471 (VFM471Q) /CSM/VF/VFM4-C/VFM471Q.Seq.d/ 155 1e-37
VFK704 (VFK704Q) /CSM/VF/VFK7-A/VFK704Q.Seq.d/ 155 1e-37
VFJ234 (VFJ234Q) /CSM/VF/VFJ2-B/VFJ234Q.Seq.d/ 155 1e-37
VFH794 (VFH794Q) /CSM/VF/VFH7-D/VFH794Q.Seq.d/ 155 1e-37
VFF395 (VFF395Q) /CSM/VF/VFF3-D/VFF395Q.Seq.d/ 155 1e-37
VFA836 (VFA836Q) /CSM/VF/VFA8-B/VFA836Q.Seq.d/ 155 1e-37
SSC690 (SSC690Q) /CSM/SS/SSC6-D/SSC690Q.Seq.d/ 155 1e-37

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AB025584) Dictyostelium discoideum DdFHb mRNA for flavohemo... 155 4e-34 1
(AU284767) Dictyostelium discoideum gamete cDNA clone:FC-BK0... 155 4e-34 1
(AU263488) Dictyostelium discoideum vegetative cDNA clone:VS... 155 4e-34 1
(AU262079) Dictyostelium discoideum vegetative cDNA clone:VS... 155 4e-34 1
(AU039531) Dictyostelium discoideum slug cDNA, clone SLE705. 155 4e-34 1
(AU034522) Dictyostelium discoideum slug cDNA, clone SLC380. 155 4e-34 1
(C85041) Dictyostelium discoideum slug cDNA, clone SSC690. 155 4e-34 1
(BJ435503) Dictyostelium discoideum cDNA clone:ddv27h11, 3' ... 155 4e-34 1
(BJ434987) Dictyostelium discoideum cDNA clone:ddv25n18, 3' ... 155 4e-34 1
(BJ434454) Dictyostelium discoideum cDNA clone:ddv16l23, 3' ... 155 4e-34 1
dna update 2009. 1.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB025584_1(AB025584|pid:none) Dictyostelium discoideum DdFHb mRN... 53 3e-06

protein update 2009. 2.16
PSORT

psg: 0.76 gvh: 0.30 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VFJ234 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFJ234Z
3' end seq.
>VFJ234Z.Seq
NNNNNNNNNNGANNCTGGTAATCTTAAAATCAATTTAGTATACTCTNAAAATCNAGNTCA
TANCAATAAAGNAATCATTGNAAAATATTCAACTCAACATGTTGATCAAG
Length of 3' end seq. 110
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -