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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ226
Library VF
(Link to library)
Clone ID VFJ226
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09608-1
Original site URL
Representative seq. ID VFJ226P
(Link to Original site)
Representative DNA sequence 
>VFJ226 (VFJ226Q) /CSM/VF/VFJ2-B/VFJ226Q.Seq.d/
AATCTTAATCTTAATCTTTATTCCAACACATCATAATCCTAAATAGTTTATATAAATTTA
TTTTATATAATTCATTTTTATTAAAAAATGAATTACCTTTATAATATTTCAGAATCTTTA
AAAAAGATTTTTAATTATTTTAGTAGTATTACAAGAGATTGTGAAAAGAAAAGAGTTTTA
ATAATTGGGTGTGGTTTTGGAGGTAGCCAAGTTGCAAAATTATTAGATTCAAATTTTGAA
GTAACTGTTGTTGAAAGAAAACAAACATTTTTTAATAGTATTGCATCAATAAGAGCAATA
GTTGAACCAGAATTGGCAAAAAAAATATATATACCATATGATAAACTATTGAAAAATGGT
AAATTTATTTATGGTACAGTTATTGAAATTTCACCAACTCTTGTAAAATTAGAAGATGGT
AAAGAATTAACATTTGATTATTTAGTAATTGCAACTGGTTCAAATTCATTGGCACCTTTT
AAAGCACCATTAGAAAAAATATCAGGTACTGAAATTTTTAATTACTATAAAGACATATCX
XXXXXXXXXCCCNAATTTTCNAGTTTCNTTNAAAACATATNAAACTAAAAATGGGNTATC
AATTGAATNTGATTTTGNAATTTGGNCAATTGGNATTAAATTAAANAGTGAATNTTATAA
AACTAATTTTTCAAATGAAATTAATGAAATTGGNCNAATTAAAGTTAATCAAAGTTGTCA
AGTTCAAGGANACGATAANANATTTGCAATTGGNGATATTACANATTTTNATGAACTTNA
AACCNCANACAATGCNCTTTNNCATGGGAANANAGNAGCTAAAGTTANAAAANATTTATC
NAATGGNAAAAANAAAAACCNACNTGCNAAACATNAATTNTTACCCCCNATCNTTAGNCT
ATCCCTAGGGCCNAAANANGGNTTAACNCNAATTAATTCNAATTTAAATTTTGGNTCNTT
TANATCNAGAATATTAAAATCNAATAATTTATTAATTAATAGATTTCCAACNCCTTTTAA
TAANCCCGAACCCT
sequence update 2001.11.22
Translated Amino Acid sequence 
nlnlnlysnts*s*ivyinlfyiihfy*KMNYLYNISESLKKIFNYFSSITRDCEKKRVL
IIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKLLKNG
KFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYYKDI-
--

---PNFXVSXKTYXTKNGXSIEXDFXIWXIGIKLXSEXYKTNFSNEINEIGXIKVNQSCQ
VQGXDXXFAIGDITXFXELXTXXNALXHGXXXAKVXKXLSNGKXKNXXAKHXXLPPIXXL
SLGPKXGLTXINSNLNFGSFXSRILKSNNLLINRFPTPFNXPEP
Translated Amino Acid sequence (All Frames) 
Frame A:
nlnlnlysnts*s*ivyinlfyiihfy*KMNYLYNISESLKKIFNYFSSITRDCEKKRVL
IIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKLLKNG
KFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYYKDI-
--

---pxfssfxxnixn*kwxin*x*fxnlxnwx*ikx*xl*n*ffk*n**nwxn*s*skls
ssrxr*xicnwxyyxfx*txnxxqcxxxwexxs*sxkxfixwxkxkptcxtxixtpxx*x
ipraxxxxnxn*fxfkfwxxxixnikix*fin**isnxf**xrt

Frame B:
ililifipthhnpk*fi*iyfi*fifikk*itfiifqnl*krfliilvvlqeivkrkef*
*lgvvlevaklqny*iqilk*lllkenkhflivlhq*eq*lnqnwqkkyiyhminy*kmv
nlfmvqllkfhqll*n*kmvkn*hlii**lqlvqihwhllkhh*kkyqvlkflitikty-
--

---PNFXVSXKTYXTKNGXSIEXDFXIWXIGIKLXSEXYKTNFSNEINEIGXIKVNQSCQ
VQGXDXXFAIGDITXFXELXTXXNALXHGXXXAKVXKXLSNGKXKNXXAKHXXLPPIXXL
SLGPKXGLTXINSNLNFGSFXSRILKSNNLLINRFPTPFNXPEP

Frame C:
s*s*slfqhiiilnslykfilynsfllknelpl*yfrifkkdf*lf**yykrl*keksfn
nwvwfwr*psckiirfkf*sncc*kktnif**ycinksns*trigkkniyti**tiekw*
iylwysy*nftnsckirrw*rini*lfsncnwfkfigtf*stirkniry*nf*ll*rhi-
--

---xifxfxxkhxklkmgyqlnxilxfgqlxln*xvnxiklifqmklmklxxlklikvvk
fkxtixxlqlxilxixmnxkpxtmxfxmgxxxlklxxiyxmxkxktxxxnxnxypxslxy
p*gxxxx*xxlixi*ilxxlxxey*nxiiy*lidfqxllixpnp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ226 (VFJ226Q) /CSM/VF/VFJ2-B/VFJ226Q.Seq.d/                       1610   0.0
CFC524 (CFC524Q) /CSM/CF/CFC5-A/CFC524Q.Seq.d/                        983   0.0
VFF836 (VFF836Q) /CSM/VF/VFF8-B/VFF836Q.Seq.d/                        981   0.0
VFJ355 (VFJ355Q) /CSM/VF/VFJ3-C/VFJ355Q.Seq.d/                        486   e-136
VSH482 (VSH482Q) /CSM/VS/VSH4-D/VSH482Q.Seq.d/                        216   5e-55
VFL685 (VFL685Q) /CSM/VF/VFL6-D/VFL685Q.Seq.d/                        200   3e-50
SSL702 (SSL702Q) /CSM/SS/SSL7-A/SSL702Q.Seq.d/                         42   0.017
SLI102 (SLI102Q) /CSM/SL/SLI1-A/SLI102Q.Seq.d/                         40   0.066
SLF625 (SLF625Q) /CSM/SL/SLF6-B/SLF625Q.Seq.d/                         40   0.066
VSH122 (VSH122Q) /CSM/VS/VSH1-A/VSH122Q.Seq.d/                         38   0.26
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ414464) Dictyostelium discoideum cDNA clone:ddv19c08, 5' ...   424   0.0    3
(BJ360460) Dictyostelium discoideum cDNA clone:ddc6o05, 5' e...   424   0.0    3
(BJ410385) Dictyostelium discoideum cDNA clone:ddv12h10, 5' ...   424   0.0    3
(BJ432633) Dictyostelium discoideum cDNA clone:ddv19c08, 3' ...   628   e-175  1
(BJ428536) Dictyostelium discoideum cDNA clone:ddv12h10, 3' ...   488   e-133  1
(BJ432751) Dictyostelium discoideum cDNA clone:ddv19n13, 3' ...   486   e-133  1
(AU267518) Dictyostelium discoideum vegetative cDNA clone:VS...   216   4e-74  2
(BJ434751) Dictyostelium discoideum cDNA clone:ddv24i22, 3' ...   200   8e-47  1
(AF033921) Bactrocera xanthodes strain Fiji mitochondrial D-...    44   0.17   3
(AF033928) Bactrocera xanthodes strain Samoa mitochondrial D...    44   0.17   3
dna update 2009. 1.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NS9) RecName: Full=Apoptosis-inducing factor homolog A;     ...   298   2e-79
(Q54NS8) RecName: Full=Apoptosis-inducing factor homolog B;     ...   206   1e-51
AK117798_1(AK117798|pid:none) Arabidopsis thaliana At5g22140 mRN...    88   6e-16
AL589883_25(AL589883|pid:none) Arabidopsis thaliana DNA chromoso...    88   6e-16
BT021162_1(BT021162|pid:none) Bos taurus apoptosis-inducing fact...    74   1e-11
CP000264_2419(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    72   4e-11
AM483224_2(AM483224|pid:none) Vitis vinifera contig VV78X069222....    70   1e-10
(Q8BUE4) RecName: Full=Apoptosis-inducing factor 2;          EC=...    67   1e-09
(B4F6I3) RecName: Full=Apoptosis-inducing factor 2;          EC=...    67   1e-09
BC038129_1(BC038129|pid:none) Mus musculus apoptosis-inducing fa...    67   1e-09
protein update 2009. 6.22
PSORT 

 psg: 0.62  gvh: 0.43  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFJ226 is cyt
5' end seq. ID VFJ226F
5' end seq. 
>VFJ226F.Seq
AATCTTAATCTTAATCTTTATTCCAACACATCATAATCCTAAATAGTTTATATAAATTTA
TTTTATATAATTCATTTTTATTAAAAAATGAATTACCTTTATAATATTTCAGAATCTTTA
AAAAAGATTTTTAATTATTTTAGTAGTATTACAAGAGATTGTGAAAAGAAAAGAGTTTTA
ATAATTGGGTGTGGTTTTGGAGGTAGCCAAGTTGCAAAATTATTAGATTCAAATTTTGAA
GTAACTGTTGTTGAAAGAAAACAAACATTTTTTAATAGTATTGCATCAATAAGAGCAATA
GTTGAACCAGAATTGGCAAAAAAAATATATATACCATATGATAAACTATTGAAAAATGGT
AAATTTATTTATGGTACAGTTATTGAAATTTCACCAACTCTTGTAAAATTAGAAGATGGT
AAAGAATTAACATTTGATTATTTAGTAATTGCAACTGGTTCAAATTCATTGGCACCTTTT
AAAGCACCATTAGAAAAAATATCAGGTACTGAAATTTTTAATTACTATAAAGACATATCN
NNNNNNNNN
Length of 5' end seq. 549
3' end seq. ID VFJ226Z
3' end seq. 
>VFJ226Z.Seq
NNNNNNNNNNCCCNAATTTTCNAGTTTCNTTNAAAACATATNAAACTAAAAATGGGNTAT
CAATTGAATNTGATTTTGNAATTTGGNCAATTGGNATTAAATTAAANAGTGAATNTTATA
AAACTAATTTTTCAAATGAAATTAATGAAATTGGNCNAATTAAAGTTAATCAAAGTTGTC
AAGTTCAAGGANACGATAANANATTTGCAATTGGNGATATTACANATTTTNATGAACTTN
AAACCNCANACAATGCNCTTTNNCATGGGAANANAGNAGCTAAAGTTANAAAANATTTAT
CNAATGGNAAAAANAAAAACCNACNTGCNAAACATNAATTNTTACCCCCNATCNTTAGNC
TATCCCTAGGGCCNAAANANGGNTTAACNCNAATTAATTCNAATTTAAATTTTGGNTCNT
TTANATCNAGAATATTAAAATCNAATAATTTATTAATTAATAGATTTCCAACNCCTTTTA
ATAANCCCGAACCCT
Length of 3' end seq. 495
Connected seq. ID VFJ226P
Connected seq. 
>VFJ226P.Seq
AATCTTAATCTTAATCTTTATTCCAACACATCATAATCCTAAATAGTTTATATAAATTTA
TTTTATATAATTCATTTTTATTAAAAAATGAATTACCTTTATAATATTTCAGAATCTTTA
AAAAAGATTTTTAATTATTTTAGTAGTATTACAAGAGATTGTGAAAAGAAAAGAGTTTTA
ATAATTGGGTGTGGTTTTGGAGGTAGCCAAGTTGCAAAATTATTAGATTCAAATTTTGAA
GTAACTGTTGTTGAAAGAAAACAAACATTTTTTAATAGTATTGCATCAATAAGAGCAATA
GTTGAACCAGAATTGGCAAAAAAAATATATATACCATATGATAAACTATTGAAAAATGGT
AAATTTATTTATGGTACAGTTATTGAAATTTCACCAACTCTTGTAAAATTAGAAGATGGT
AAAGAATTAACATTTGATTATTTAGTAATTGCAACTGGTTCAAATTCATTGGCACCTTTT
AAAGCACCATTAGAAAAAATATCAGGTACTGAAATTTTTAATTACTATAAAGACATATC-
---------CCCNAATTTTCNAGTTTCNTTNAAAACATATNAAACTAAAAATGGGNTATC
AATTGAATNTGATTTTGNAATTTGGNCAATTGGNATTAAATTAAANAGTGAATNTTATAA
AACTAATTTTTCAAATGAAATTAATGAAATTGGNCNAATTAAAGTTAATCAAAGTTGTCA
AGTTCAAGGANACGATAANANATTTGCAATTGGNGATATTACANATTTTNATGAACTTNA
AACCNCANACAATGCNCTTTNNCATGGGAANANAGNAGCTAAAGTTANAAAANATTTATC
NAATGGNAAAAANAAAAACCNACNTGCNAAACATNAATTNTTACCCCCNATCNTTAGNCT
ATCCCTAGGGCCNAAANANGGNTTAACNCNAATTAATTCNAATTTAAATTTTGGNTCNTT
TANATCNAGAATATTAAAATCNAATAATTTATTAATTAATAGATTTCCAACNCCTTTTAA
TAANCCCGAACCCT
Length of connected seq. 1024
Full length Seq ID -
Full length Seq. -
Length of full length seq. -