NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ214
Library VF
(Link to library)
Clone ID VFJ214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16027-1
Original site URL
Representative seq. ID VFJ214P
(Link to Original site)
Representative DNA sequence 
>VFJ214 (VFJ214Q) /CSM/VF/VFJ2-A/VFJ214Q.Seq.d/
GTTTTTCTAGTTAAATTTTAAGAAAATGCCTCACTCATTCGGTCTCCGTGCTCGTACCAG
ATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTCTTACAAACCACCACCTTCTTAAG
AACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCCACCGGTAATGTACACAAAGGTAT
GCCACACAAATTCTACCACGGTCGTACCGGTCGTGTTTGGAATGTTACTCCACGTGCTGT
TGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATCATTGCCAAGAAAATCCACGTCAG
AACTGAACACGTCAAACCATCAAACTCCATGGCTGCTCACTTAAAACGTATCCAAGAAAA
CAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAATGGGTCGATGTTAGACGTAACCC
AGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGAAACACTGAATTCGTTGAAGTCAA
ACCAGTCAAATACGAACTTTTATTATAAATTAATTTAAAAGAGTGGTGGCTAATATGGTT
CAATCGCAATCCTTTGATTATCCAAATTTGTCTTATTTAAAAAAGAAAAATAAAAAAAAA
TTTAANAAAAAATXXXXXXXXXXGTTTTTCTAGTTAAATTTTAAGAAAATGCCTCACTCA
TTCGGTCTCCGTGCTCGTACCAGATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTC
TTACAAACCACCACCTTCTTAAGAACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCC
ACCGGTAATGTACACAAAGGTATGCCACACAAATTCTACCACGGTCGTACCGGTCGTGTT
TGGAATGTTACTCCACGTGCTGTTGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATC
ATTGCCAAGAAAATCCACGTCAGAACTGAACACGTCAAACCATCAAACTCCATGGCTGCT
CACTTAAAACGTATCCAAGAAAACAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAA
TGGGTCGATGTTAGACGTAACCCAGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGA
AACACTGAATTCGTTGAAGTCAAACCAGTCAAATACGAACTTTTATTATAAATTAATTTA
AAAGAGTGGTGGCTAATAGGGTTCAATCGCAATCCTTGATTATCCAAATTTGTCTTATTT
AAAAAAGAAAAATAAAAAAAAATATAAAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
vflvkf*enaslirspcsyqilvlswfqkpwsltnhhllknfpfr*lr*yqshr*ctqry
atqilprsyrsclecystccwchhqqtcwsknhcqenprqn*trqtiklhgcslktyprk
qkscr*sqesr*mgrc*t*psctkgrflcqpkkh*ir*sqtsqirtfiin*FKRVVANMV
QSQSFDYPNLSYLKKKNKKKFXKK---

---VFLVKF*enaslirspcsyqilvlswfqkpwsltnhhllknfpfr*lr*yqshr*ct
qryatqilprsyrsclecystccwchhqqtcwsknhcqenprqn*trqtiklhgcslkty
prkqkscr*sqesr*mgrc*t*psctkgrflcqpkkh*ir*sqtsqirtfiin*fkrvva
nrvqsqsliiqicli*krkikknikk
Translated Amino Acid sequence (All Frames) 
Frame A:
vflvkf*enaslirspcsyqilvlswfqkpwsltnhhllknfpfr*lr*yqshr*ctqry
atqilprsyrsclecystccwchhqqtcwsknhcqenprqn*trqtiklhgcslktyprk
qkscr*sqesr*mgrc*t*psctkgrflcqpkkh*ir*sqtsqirtfiin*FKRVVANMV
QSQSFDYPNLSYLKKKNKKKFXKK---

---VFLVKF*enaslirspcsyqilvlswfqkpwsltnhhllknfpfr*lr*yqshr*ct
qryatqilprsyrsclecystccwchhqqtcwsknhcqenprqn*trqtiklhgcslkty
prkqkscr*sqesr*mgrc*t*psctkgrflcqpkkh*ir*sqtsqirtfiin*fkrvva
nrvqsqsliiqicli*krkikknikk

Frame B:
ff*lnfkkmphsfglrartrylfsrgfrnhgllqtttflrtfrlgdyvdikatgnvhkgm
phkfyhgrtgrvwnvtpravgviinkrvgpriiakkihvrtehvkpsnsmaahlkriqen
kkavveakkagkwvdvrrnpaapkdgffvnprntefvevkpvkyelll*inlkewwliwf
nrnpliiqicli*krkikknlxkn---

---ff*lnfkkmphsfglrartrylfsrgfrnhgllqtttflrtfrlgdyvdikatgnvh
kgmphkfyhgrtgrvwnvtpravgviinkrvgpriiakkihvrtehvkpsnsmaahlkri
qenkkavveakkagkwvdvrrnpaapkdgffvnprntefvevkpvkyelll*inlkewwl
igfnrnp*lskfvlfkkek*kki*kk

Frame C:
fss*ilrkclthsvsvlvpdtcslvvsetmvsykppps*elsv*vitliskppvmytkvc
htnsttvvpvvfgmllhvllvssstnvlvqeslprkstselntsnhqtpwllt*nvskkt
kklslkprkpvngsmldvtqlhqrtvslstqetlnslksnqsntnfyykli*ksgg*ygs
iail*lskfvlfkkek*kki*xk---

---fss*ilrkclthsvsvlvpdtcslvvsetmvsykppps*elsv*vitliskppvmyt
kvchtnsttvvpvvfgmllhvllvssstnvlvqeslprkstselntsnhqtpwllt*nvs
kktkklslkprkpvngsmldvtqlhqrtvslstqetlnslksnqsntnfyykli*ksgg*
*gsiaildypnlsylkkknkkkykkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ214 (VFJ214Q) /CSM/VF/VFJ2-A/VFJ214Q.Seq.d/                       1146   0.0
VHK774 (VHK774Q) /CSM/VH/VHK7-D/VHK774Q.Seq.d/                       1130   0.0
VFL168 (VFL168Q) /CSM/VF/VFL1-C/VFL168Q.Seq.d/                       1130   0.0
VHH523 (VHH523Q) /CSM/VH/VHH5-A/VHH523Q.Seq.d/                       1122   0.0
VSB776 (VSB776Q) /CSM/VS/VSB7-D/VSB776Q.Seq.d/                       1118   0.0
FC-193 (FC-193Q) /CSM/CG/CG-FC/FC-193Q.Seq.d/                        1118   0.0
VSI403 (VSI403Q) /CSM/VS/VSI4-A/VSI403Q.Seq.d/                       1106   0.0
VSF754 (VSF754Q) /CSM/VS/VSF7-C/VSF754Q.Seq.d/                       1106   0.0
VSB311 (VSB311Q) /CSM/VS/VSB3-A/VSB311Q.Seq.d/                       1102   0.0
FC-BQ22 (FC-BQ22Q) /CSM/FC/FC-BQ/FC-BQ22Q.Seq.d/                     1102   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ414431) Dictyostelium discoideum cDNA clone:ddv19k04, 5' ...  1146   0.0    1
(BJ432590) Dictyostelium discoideum cDNA clone:ddv19k04, 3' ...  1142   0.0    1
(BJ424534) Dictyostelium discoideum cDNA clone:ddv52d19, 5' ...  1130   0.0    1
(BJ415743) Dictyostelium discoideum cDNA clone:ddv23g17, 5' ...  1130   0.0    1
(BJ422514) Dictyostelium discoideum cDNA clone:ddv46m05, 5' ...  1122   0.0    1
(AU262240) Dictyostelium discoideum vegetative cDNA clone:VS...  1118   0.0    1
(AU265734) Dictyostelium discoideum vegetative cDNA clone:VS...  1106   0.0    1
(AU284945) Dictyostelium discoideum gamete cDNA clone:FC-BQ2...  1102   0.0    1
(AU261946) Dictyostelium discoideum vegetative cDNA clone:VS...  1102   0.0    1
(AU261683) Dictyostelium discoideum vegetative cDNA clone:VS...  1100   0.0    1
dna update 2009. 1.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X53) RecName: Full=60S ribosomal protein L21;                     268   2e-70
FN357335_1(FN357335|pid:none) Schistosoma mansoni genome sequenc...   154   6e-36
AY813279_1(AY813279|pid:none) Schistosoma japonicum SJCHGC00639 ...   150   9e-35
GN110337_1(GN110337|pid:none) Sequence 15118 from Patent WO20090...   150   1e-34
GN110445_1(GN110445|pid:none) Sequence 15226 from Patent WO20090...   149   2e-34
AF475114_1(AF475114|pid:none) Triticum aestivum 60s ribosomal pr...   149   3e-34
GN110339_1(GN110339|pid:none) Sequence 15120 from Patent WO20090...   149   3e-34
GN110301_1(GN110301|pid:none) Sequence 15082 from Patent WO20090...   147   6e-34
GN110441_1(GN110441|pid:none) Sequence 15222 from Patent WO20090...   147   6e-34
CS559802_1(CS559802|pid:none) Sequence 389 from Patent WO2006032...   147   6e-34
protein update 2009. 6.22
PSORT 

 psg: 0.80  gvh: 0.28  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic

>> prediction for VFJ214 is nuc
5' end seq. ID VFJ214F
5' end seq. 
>VFJ214F.Seq
GTTTTTCTAGTTAAATTTTAAGAAAATGCCTCACTCATTCGGTCTCCGTGCTCGTACCAG
ATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTCTTACAAACCACCACCTTCTTAAG
AACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCCACCGGTAATGTACACAAAGGTAT
GCCACACAAATTCTACCACGGTCGTACCGGTCGTGTTTGGAATGTTACTCCACGTGCTGT
TGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATCATTGCCAAGAAAATCCACGTCAG
AACTGAACACGTCAAACCATCAAACTCCATGGCTGCTCACTTAAAACGTATCCAAGAAAA
CAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAATGGGTCGATGTTAGACGTAACCC
AGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGAAACACTGAATTCGTTGAAGTCAA
ACCAGTCAAATACGAACTTTTATTATAAATTAATTTAAAAGAGTGGTGGCTAATATGGTT
CAATCGCAATCCTTTGATTATCCAAATTTGTCTTATTTAAAAAAGAAAAATAAAAAAAAA
TTTAANAAAAAATNNNNNNNNNN
Length of 5' end seq. 623
3' end seq. ID VFJ214Z
3' end seq. 
>VFJ214Z.Seq
NNNNNNNNNNGTTTTTCTAGTTAAATTTTAAGAAAATGCCTCACTCATTCGGTCTCCGTG
CTCGTACCAGATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTCTTACAAACCACCA
CCTTCTTAAGAACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCCACCGGTAATGTAC
ACAAAGGTATGCCACACAAATTCTACCACGGTCGTACCGGTCGTGTTTGGAATGTTACTC
CACGTGCTGTTGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATCATTGCCAAGAAAA
TCCACGTCAGAACTGAACACGTCAAACCATCAAACTCCATGGCTGCTCACTTAAAACGTA
TCCAAGAAAACAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAATGGGTCGATGTTA
GACGTAACCCAGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGAAACACTGAATTCG
TTGAAGTCAAACCAGTCAAATACGAACTTTTATTATAAATTAATTTAAAAGAGTGGTGGC
TAATAGGGTTCAATCGCAATCCTTGATTATCCAAATTTGTCTTATTTAAAAAAGAAAAAT
AAAAAAAAATATAAAAAAAAA
Length of 3' end seq. 621
Connected seq. ID VFJ214P
Connected seq. 
>VFJ214P.Seq
GTTTTTCTAGTTAAATTTTAAGAAAATGCCTCACTCATTCGGTCTCCGTGCTCGTACCAG
ATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTCTTACAAACCACCACCTTCTTAAG
AACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCCACCGGTAATGTACACAAAGGTAT
GCCACACAAATTCTACCACGGTCGTACCGGTCGTGTTTGGAATGTTACTCCACGTGCTGT
TGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATCATTGCCAAGAAAATCCACGTCAG
AACTGAACACGTCAAACCATCAAACTCCATGGCTGCTCACTTAAAACGTATCCAAGAAAA
CAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAATGGGTCGATGTTAGACGTAACCC
AGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGAAACACTGAATTCGTTGAAGTCAA
ACCAGTCAAATACGAACTTTTATTATAAATTAATTTAAAAGAGTGGTGGCTAATATGGTT
CAATCGCAATCCTTTGATTATCCAAATTTGTCTTATTTAAAAAAGAAAAATAAAAAAAAA
TTTAANAAAAAAT----------GTTTTTCTAGTTAAATTTTAAGAAAATGCCTCACTCA
TTCGGTCTCCGTGCTCGTACCAGATACTTGTTCTCTCGTGGTTTCAGAAACCATGGTCTC
TTACAAACCACCACCTTCTTAAGAACTTTCCGTTTAGGTGATTACGTTGATATCAAAGCC
ACCGGTAATGTACACAAAGGTATGCCACACAAATTCTACCACGGTCGTACCGGTCGTGTT
TGGAATGTTACTCCACGTGCTGTTGGTGTCATCATCAACAAACGTGTTGGTCCAAGAATC
ATTGCCAAGAAAATCCACGTCAGAACTGAACACGTCAAACCATCAAACTCCATGGCTGCT
CACTTAAAACGTATCCAAGAAAACAAAAAAGCTGTCGTTGAAGCCAAGAAAGCCGGTAAA
TGGGTCGATGTTAGACGTAACCCAGCTGCACCAAAGGACGGTTTCTTTGTCAACCCAAGA
AACACTGAATTCGTTGAAGTCAAACCAGTCAAATACGAACTTTTATTATAAATTAATTTA
AAAGAGTGGTGGCTAATAGGGTTCAATCGCAATCCTTGATTATCCAAATTTGTCTTATTT
AAAAAAGAAAAATAAAAAAAAATATAAAAAAAAA
Length of connected seq. 1224
Full length Seq ID -
Full length Seq. -
Length of full length seq. -