NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ167
Library VF
(Link to library)
Clone ID VFJ167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID VFJ167P
(Link to Original site)
Representative DNA sequence 
>VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/
TAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTT
CTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATT
CAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAG
ATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATT
GGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGT
CTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAAC
TGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGA
TGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGT
TAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGT
TTACTTTAAATACTCCCCAACAACTGGCXXXXXXXXXXGAAAATAAATTTCAAAAGTAAA
AGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTT
GGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAAC
AATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGT
AACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCT
CAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTA
CCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCT
GGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGT
GATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGC
CATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTAC
TTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCA
AAGAATATGACTGTTACACAAGATGATAATACATCTTTCATCTTTAACTTAAACTCTGAA
AAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTAAATAATA
sequence update 2001.11.22
Translated Amino Acid sequence 
krysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGSNVR
CNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNST
AGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSV
YFKYSPTTG---

---KINFKSKRYSIKN*kmsvdankvkfffgknctgesfeynkgetvrfnngdkwndkfm
sclvgsnvrcniwehneidtptpgkfqelaqgstnndltsinglskfqvlpgafqwavdv
kivnkvnstagsyemtitpyqvdkvackdgddfvqlpipkltppdseivshltvrqthtp
ydyvvngsvyfkyspttgqvtvikkdetfpknmtvtqddntsfifnlnsek*nnmffflf
kktlnn
Translated Amino Acid sequence (All Frames) 
Frame A:
*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ihvmfgwfkc*
m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*ncqqs*fn
cwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pfnsssntyti*lcckwkc
ll*ilpnnw---

---enkfqk*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ih
vmfgwfkc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c
*ncqqs*fncwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pfnsssntyt
i*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytr**yifhl*lkl*kikqyvffsl
*enfk*

Frame B:
krysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGSNVR
CNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNST
AGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYVVNGSV
YFKYSPTTG---

---KINFKSKRYSIKN*kmsvdankvkfffgknctgesfeynkgetvrfnngdkwndkfm
sclvgsnvrcniwehneidtptpgkfqelaqgstnndltsinglskfqvlpgafqwavdv
kivnkvnstagsyemtitpyqvdkvackdgddfvqlpipkltppdseivshltvrqthtp
ydyvvngsvyfkyspttgqvtvikkdetfpknmtvtqddntsfifnlnsek*nnmffflf
kktlnn

Frame C:
kgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingminschvwlvqmld
vtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngqlmlklstkliql
lvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai*qfvkhihhmtml*mevf
tlntpqql---

---k*iskvkgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingminsc
hvwlvqmldvtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngqlml
klstkliqllvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai*qfvkhihh
mtml*mevftlntpqqlaklqllkkmrhsqri*llhkmiihlsslt*tlknkticfffsl
rkl*ii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/                       1217   0.0
SSJ652 (SSJ652Q) /CSM/SS/SSJ6-C/SSJ652Q.Seq.d/                       1217   0.0
SSC587 (SSC587Q) /CSM/SS/SSC5-D/SSC587Q.Seq.d/                       1217   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                       1211   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                       1211   0.0
VHC822 (VHC822Q) /CSM/VH/VHC8-A/VHC822Q.Seq.d/                       1211   0.0
VFG405 (VFG405Q) /CSM/VF/VFG4-A/VFG405Q.Seq.d/                       1211   0.0
AHH433 (AHH433Q) /CSM/AH/AHH4-B/AHH433Q.Seq.d/                       1211   0.0
AHG682 (AHG682Q) /CSM/AH/AHG6-D/AHG682Q.Seq.d/                       1211   0.0
AHE127 (AHE127Q) /CSM/AH/AHE1-B/AHE127Q.Seq.d/                       1211   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C94392) Dictyostelium discoideum slug cDNA, clone SSK613.       1203   0.0    1
(C91961) Dictyostelium discoideum slug cDNA, clone SSC587.       1203   0.0    2
(C91121) Dictyostelium discoideum slug cDNA, clone SSJ652.       1203   0.0    2
(BJ432722) Dictyostelium discoideum cDNA clone:ddv19e17, 3' ...  1203   0.0    2
(BJ438038) Dictyostelium discoideum cDNA clone:ddv36l06, 3' ...  1197   0.0    2
(BJ351983) Dictyostelium discoideum cDNA clone:dda45b10, 3' ...  1197   0.0    2
(BJ350267) Dictyostelium discoideum cDNA clone:dda39e07, 3' ...  1197   0.0    2
(BJ348734) Dictyostelium discoideum cDNA clone:dda34n02, 3' ...  1197   0.0    2
(C91339) Dictyostelium discoideum slug cDNA, clone SSK494.       1195   0.0    2
(U49650) Dictyostelium discoideum calcium-dependent cell adh...  1185   0.0    1
dna update 2009. 1.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   443   e-123
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   399   e-110
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    98   6e-19
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    62   3e-08
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    56   2e-06
protein update 2009. 2.15
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VFJ167 is cyt
5' end seq. ID VFJ167F
5' end seq. 
>VFJ167F.Seq
TAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTT
CTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATT
CAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAG
ATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATT
GGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGT
CTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAAC
TGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGA
TGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGT
TAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGT
TTACTTTAAATACTCCCCAACAACTGGCNNNNNNNNNN
Length of 5' end seq. 578
3' end seq. ID VFJ167Z
3' end seq. 
>VFJ167Z.Seq
NNNNNNNNNNGAAAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGT
CTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTG
AATACAACAAAGGTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCA
TGTCATGTTTGGTTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATA
CTCCAACTCCAGGAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCT
CAATAAATGGTCTTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATG
TTAAAATTGTCAACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCAT
ACCAAGTTGATAAGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAA
AACTTACTCCACCAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACAC
CATATGACTATGTTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAG
TTACAGTTATTAAAAAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATA
ATACATCTTTCATCTTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCT
TTAAGAAAACTTTAAATAATA
Length of 3' end seq. 741
Connected seq. ID VFJ167P
Connected seq. 
>VFJ167P.Seq
TAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTT
CTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATT
CAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAG
ATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATT
GGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGT
CTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAAC
TGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGA
TGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGT
TAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGT
TTACTTTAAATACTCCCCAACAACTGGC----------GAAAATAAATTTCAAAAGTAAA
AGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTT
GGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAAC
AATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGT
AACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCT
CAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTA
CCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCT
GGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGT
GATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGC
CATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTAC
TTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCA
AAGAATATGACTGTTACACAAGATGATAATACATCTTTCATCTTTAACTTAAACTCTGAA
AAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTAAATAATA
Length of connected seq. 1299
Full length Seq ID -
Full length Seq. -
Length of full length seq. -