VFJ151
Library VF
(Link to library)
Clone ID VFJ151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15589-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFJ151 (VFJ151Q) /CSM/VF/VFJ1-C/VFJ151Q.Seq.d/
TTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATTTTT
TTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAATATT
TGTTTTTTTTTTTTTTTTNAAAAAGGGGXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
FLIFNFFIYIHKYLFLFLFFFIIFQHNNI*l*fginsvifvffffxkk---


Translated Amino Acid sequence (All Frames)
Frame A:
fsnf*ffyiyt*ififififfynfpt*qyliiiwy**cnicfffffxkg---


Frame B:
FLIFNFFIYIHKYLFLFLFFFIIFQHNNI*l*fginsvifvffffxkk---


Frame C:
f*fliflyiyiniyfyfyffl*fsnitisnynlvliv*ylfffffxkr---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN192 (VFN192Q) /CSM/VF/VFN1-D/VFN192Q.Seq.d/ 100 1e-20
VFN105 (VFN105Q) /CSM/VF/VFN1-A/VFN105Q.Seq.d/ 100 1e-20
VFL703 (VFL703Q) /CSM/VF/VFL7-A/VFL703Q.Seq.d/ 100 1e-20
VFJ870 (VFJ870Q) /CSM/VF/VFJ8-C/VFJ870Q.Seq.d/ 100 1e-20
VFJ151 (VFJ151Q) /CSM/VF/VFJ1-C/VFJ151Q.Seq.d/ 100 1e-20
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/ 100 1e-20
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/ 100 1e-20
SFI646 (SFI646Q) /CSM/SF/SFI6-B/SFI646Q.Seq.d/ 100 1e-20
SFG838 (SFG838Q) /CSM/SF/SFG8-B/SFG838Q.Seq.d/ 100 1e-20
CFK151 (CFK151Q) /CSM/CF/CFK1-C/CFK151Q.Seq.d/ 100 1e-20

own update 2003.10.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(L16578) Dictyostelium discoideum HIV1 TAT-binding protein h... 100 3e-17 1
(AU071858) Dictyostelium discoideum slug cDNA, clone SSC647. 100 3e-17 1
(BJ416937) Dictyostelium discoideum cDNA clone:ddv27g23, 5' ... 100 3e-17 1
(BJ416728) Dictyostelium discoideum cDNA clone:ddv27i01, 5' ... 100 3e-17 1
(BJ415883) Dictyostelium discoideum cDNA clone:ddv24f01, 5' ... 100 3e-17 1
(BJ414862) Dictyostelium discoideum cDNA clone:ddv20l18, 5' ... 100 3e-17 1
(BJ414543) Dictyostelium discoideum cDNA clone:ddv19e13, 5' ... 100 3e-17 1
(BJ410940) Dictyostelium discoideum cDNA clone:ddv2n07, 5' e... 100 3e-17 1
(BJ390958) Dictyostelium discoideum cDNA clone:dds14l10, 5' ... 100 3e-17 1
(BJ389340) Dictyostelium discoideum cDNA clone:dds18k12, 5' ... 100 3e-17 1
dna update 2009. 1.12
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 68,929,304
protein update 2009. 6.21
PSORT

psg: 0.95 gvh: 0.60 alm: 0.27 top: 0.40 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for VFJ151 is end

5' end seq. ID VFJ151F
5' end seq.
>VFJ151F.Seq
TTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATTTTT
TTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAATATT
TGTTTTTTTTTTTTTTTTNAAAAAGGGGNNNNNNNNNN
Length of 5' end seq. 158
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -