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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ133
Library VF
(Link to library)
Clone ID VFJ133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13930-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFJ133 (VFJ133Q) /CSM/VF/VFJ1-B/VFJ133Q.Seq.d/
XXXXXXXXXXAGTATTAATAAATNNATTAATAAATTTTTAATAAATNGGATAAATAAAAT
AAATTANAATGATTGCCAAAGTTTTCAAATCAANAACCCCAGAGATCATACATTTTATTA
GTCAACGCTGGTTTAATTTCAGCCTATGGTGTTAGAAAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---INKXINKFLINXINKINXNDCQSFQIXNPRDHTFY*stlv*fqpmvlekk
Translated Amino Acid sequence (All Frames) 
Frame A:
---vlinxlinf**xg*ik*ixmiakvfksxtpeiihfisqrwfnfslwc*kkk


Frame B:
---y**xx**ifnkxdk*nklx*lpkfsnqxpqrsyillvnaglisaygvrkk


Frame C:
---INKXINKFLINXINKINXNDCQSFQIXNPRDHTFY*stlv*fqpmvlekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ133 (VFJ133Q) /CSM/VF/VFJ1-B/VFJ133Q.Seq.d/                        168   2e-41
VSJ189 (VSJ189Q) /CSM/VS/VSJ1-D/VSJ189Q.Seq.d/                        161   4e-39
VSH161 (VSH161Q) /CSM/VS/VSH1-C/VSH161Q.Seq.d/                        155   2e-37
VHI795 (VHI795Q) /CSM/VH/VHI7-D/VHI795Q.Seq.d/                        149   1e-35
VSJ718 (VSJ718Q) /CSM/VS/VSJ7-A/VSJ718Q.Seq.d/                        145   2e-34
VSJ463 (VSJ463Q) /CSM/VS/VSJ4-C/VSJ463Q.Seq.d/                        145   2e-34
VSJ129 (VSJ129Q) /CSM/VS/VSJ1-B/VSJ129Q.Seq.d/                        145   2e-34
VSI455 (VSI455Q) /CSM/VS/VSI4-C/VSI455Q.Seq.d/                        145   2e-34
VSI367 (VSI367Q) /CSM/VS/VSI3-C/VSI367Q.Seq.d/                        145   2e-34
VSG207 (VSG207Q) /CSM/VS/VSG2-A/VSG207Q.Seq.d/                        145   2e-34
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ432622) Dictyostelium discoideum cDNA clone:ddv19a09, 3' ...   168   4e-38  1
(AU269547) Dictyostelium discoideum vegetative cDNA clone:VS...   161   9e-36  1
(AU266999) Dictyostelium discoideum vegetative cDNA clone:VS...   155   5e-34  1
(BJ442133) Dictyostelium discoideum cDNA clone:ddv48n23, 3' ...   149   3e-32  1
(AU263154) Dictyostelium discoideum vegetative cDNA clone:VS...   101   2e-29  2
(AB292732) Dictyostelium discoideum srsA mRNA for starvation...   101   2e-29  2
(AU263841) Dictyostelium discoideum vegetative cDNA clone:VS...   101   2e-29  2
(AU262375) Dictyostelium discoideum vegetative cDNA clone:VS...   101   2e-29  2
(BJ344287) Dictyostelium discoideum cDNA clone:dda18c05, 3' ...   101   2e-29  2
(AU269958) Dictyostelium discoideum vegetative cDNA clone:VS...   101   2e-29  2
dna update 2009. 1.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB292732_1(AB292732|pid:none) Dictyostelium discoideum srsA mRNA...    36   0.010
protein update 2009. 2.15
PSORT 

 psg: 0.70  gvh: 0.27  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFJ133 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFJ133Z
3' end seq. 
>VFJ133Z.Seq
NNNNNNNNNNAGTATTAATAAATNNATTAATAAATTTTTAATAAATNGGATAAATAAAAT
AAATTANAATGATTGCCAAAGTTTTCAAATCAANAACCCCAGAGATCATACATTTTATTA
GTCAACGCTGGTTTAATTTCAGCCTATGGTGTTAGAAAAAAAAA
Length of 3' end seq. 164
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -