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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFJ103
Library VF
(Link to library)
Clone ID VFJ103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VFJ103 (VFJ103Q) /CSM/VF/VFJ1-A/VFJ103Q.Seq.d/
TGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAA
CATTTGGGAGCATANTGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCA
AGGCAGTACANACAATGATTTAACCTCAATAAATGGTCTTTCAAAGNTCCAAGTCTTACC
AGGAGCTTTTCAATGGGCAGTNGATGTTAAAATTGTCANCAAAGTTNATTCAACTGCTGG
TTCATATGAAATGACCATTACTCCATACCAAGTTXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence 
GDKWNDKFMSCLVGSNVRCNIWEHXEIDTPTPGKFQELAQGSTXNDLTSINGLSKXQVLP
GAFQWAVDVKIVXKVXSTAGSYEMTITPYQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
w**me**ihvmfgwfkc*m*hlgax*n*ysnsrkiprigsrqyxq*fnlnkwsfkxpslt
rsfsmgsxc*ncxqsxfncwfi*ndhysips---


Frame B:
GDKWNDKFMSCLVGSNVRCNIWEHXEIDTPTPGKFQELAQGSTXNDLTSINGLSKXQVLP
GAFQWAVDVKIVXKVXSTAGSYEMTITPYQ---


Frame C:
vingminschvwlvqmldvtfgsixklilqlqensknwlkavxtmi*pq*mvfqxsksyq
elfngqxmlklsxkxiqllvhmk*pllhtk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG876 (VSG876Q) /CSM/VS/VSG8-D/VSG876Q.Seq.d/                        507   e-143
VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/                        507   e-143
VHI760 (VHI760Q) /CSM/VH/VHI7-C/VHI760Q.Seq.d/                        507   e-143
VHI219 (VHI219Q) /CSM/VH/VHI2-A/VHI219Q.Seq.d/                        507   e-143
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                        507   e-143
VHG454 (VHG454Q) /CSM/VH/VHG4-C/VHG454Q.Seq.d/                        507   e-143
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                        507   e-143
VHG158 (VHG158Q) /CSM/VH/VHG1-C/VHG158Q.Seq.d/                        507   e-143
VHC822 (VHC822Q) /CSM/VH/VHC8-A/VHC822Q.Seq.d/                        507   e-143
VHB484 (VHB484Q) /CSM/VH/VHB4-D/VHB484Q.Seq.d/                        507   e-143
own update 2003. 6.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U49650) Dictyostelium discoideum calcium-dependent cell adh...   507   e-140  1
(AU266890) Dictyostelium discoideum vegetative cDNA clone:VS...   507   e-140  1
(AU076357) Dictyostelium discoideum slug cDNA, clone SSA641.      507   e-140  1
(AU039039) Dictyostelium discoideum slug cDNA, clone SSM310.      507   e-140  1
(C94392) Dictyostelium discoideum slug cDNA, clone SSK613.        507   e-140  1
(C94348) Dictyostelium discoideum slug cDNA, clone SSK866.        507   e-140  1
(C93312) Dictyostelium discoideum slug cDNA, clone SSM611.        507   e-140  1
(C93031) Dictyostelium discoideum slug cDNA, clone SSF496.        507   e-140  1
(C92980) Dictyostelium discoideum slug cDNA, clone SSF409.        507   e-140  1
(C92931) Dictyostelium discoideum slug cDNA, clone SSF108.        507   e-140  1
dna update 2009. 1.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   180   1e-44
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   179   3e-44
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    35   0.63
protein update 2009. 2.15
PSORT 

 psg: 0.93  gvh: 0.46  alm: 0.48  top: 0.60  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFJ103 is cyt
5' end seq. ID VFJ103F
5' end seq. 
>VFJ103F.Seq
TGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTAA
CATTTGGGAGCATANTGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTCA
AGGCAGTACANACAATGATTTAACCTCAATAAATGGTCTTTCAAAGNTCCAAGTCTTACC
AGGAGCTTTTCAATGGGCAGTNGATGTTAAAATTGTCANCAAAGTTNATTCAACTGCTGG
TTCATATGAAATGACCATTACTCCATACCAAGTTNNNNNNNNNN
Length of 5' end seq. 284
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -