>VFJ102 (VFJ102Q) /CSM/VF/VFJ1-A/VFJ102Q.Seq.d/
ATTTTATTTTTATTTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGAAGAAATAAA
AGAAACTGTTGAAAAAAAAAATAAAGAAAAAAAGTATTTAAATGATTATAAAATAATTTC
TGAAGGTAATAATATTAAAGTTTTACAAAAAAAAGATTTCAAACCAAAATTTTCAXXXXX
XXXXX

FYFYFFKEIIFYKKRMEEIKETVEKKNKEKKYLNDYKIISEGNNIKVLQKKDFKPKF---

Frame A:
ilflff*rnnfl*kkngrnkrnc*kkk*rkkvfk*l*nnf*r**y*sftkkrfqtkif--
-


Frame B:
FYFYFFKEIIFYKKRMEEIKETVEKKNKEKKYLNDYKIISEGNNIKVLQKKDFKPKF---


Frame C:
fififlkk*ffikkewkk*kkllkkkikkksi*miik*flkviilkfykkkisnqnf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI304 (VSI304Q) /CSM/VS/VSI3-A/VSI304Q.Seq.d/                        115   2e-25
VSI168 (VSI168Q) /CSM/VS/VSI1-C/VSI168Q.Seq.d/                        115   2e-25
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/                        115   2e-25
VHP648 (VHP648Q) /CSM/VH/VHP6-B/VHP648Q.Seq.d/                        115   2e-25
VFJ102 (VFJ102Q) /CSM/VF/VFJ1-A/VFJ102Q.Seq.d/                        115   2e-25
VFC716 (VFC716Q) /CSM/VF/VFC7-A/VFC716Q.Seq.d/                        115   2e-25
SSI515 (SSI515Q) /CSM/SS/SSI5-A/SSI515Q.Seq.d/                        115   2e-25
VSJ788 (VSJ788Q) /CSM/VS/VSJ7-D/VSJ788Q.Seq.d/                        109   1e-23
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/                        109   1e-23
VSF487 (VSF487Q) /CSM/VS/VSF4-D/VSF487Q.Seq.d/                        109   1e-23

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(M19469) Dictyostelium discoideum 109 gene 3, complete cds.       105   9e-26  2
(U48706) Dictyostelium discoideum small aggregate formation ...   105   9e-26  2
(BJ411890) Dictyostelium discoideum cDNA clone:ddv6p03, 5' e...   105   9e-26  2
(BJ427448) Dictyostelium discoideum cDNA clone:ddv62o12, 5' ...   105   9e-26  2
(AU268259) Dictyostelium discoideum vegetative cDNA clone:VS...   105   9e-26  2
(AU264209) Dictyostelium discoideum vegetative cDNA clone:VS...   105   9e-26  2
(AU268476) Dictyostelium discoideum vegetative cDNA clone:VS...   105   9e-26  2
(AU073840) Dictyostelium discoideum slug cDNA, clone SSI515.      105   9e-26  2
(BJ414391) Dictyostelium discoideum cDNA clone:ddv19c01, 5' ...   105   9e-26  2
(BJ414247) Dictyostelium discoideum cDNA clone:ddv18d15, 5' ...   100   5e-24  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 56,754,631

 psg: 0.58  gvh: 0.11  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.25  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VFJ102 is nuc

>VFJ102F.Seq
ATTTTATTTTTATTTTTTTAAAGAAATAATTTTTTATAAAAAAAGAATGGAAGAAATAAA
AGAAACTGTTGAAAAAAAAAATAAAGAAAAAAAGTATTTAAATGATTATAAAATAATTTC
TGAAGGTAATAATATTAAAGTTTTACAAAAAAAAGATTTCAAACCAAAATTTTCANNNNN
NNNNN