NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI888
Library VF
(Link to library)
Clone ID VFI888
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09665-1
Original site URL
Representative seq. ID VFI888P
(Link to Original site)
Representative DNA sequence 
>VFI888 (VFI888Q) /CSM/VF/VFI8-D/VFI888Q.Seq.d/
TTCAATTTGTAATCAATTATCACAGAAACTTTTAGATCAATCAAAGAAACCATACTTTAA
ATGGGTTAACAAATTACAATTGAGTGATTATGTCATTGGTACATTGGCAGGTCATGAAGA
TTTCATTAGATGTGTTTTATATCGTGATGATGGTAAATTGATTGCTTCATGTTCCGATGA
TAAAACCATTAGAATTTGGAGTGGTGAAACTAGTTCATTGATTAGAGTTTTCCCAAAGGT
TCATACTGATAAAATTACAAGTCTCATTTGGAGAGGTAATCAATTGATTTCCGTTGGTAG
AGACAAAAAGATTTTAATGTGGGATGAATATGGTAAAGTTTTAGCCGATTTCGCAGGTGG
TCATTCAAATGCAGTTTGGGGTTGTAGTGTAAGTGGTGATGGTAAACGTTTAGTCACTGC
AAGTTGGGATCAAAGTGCAATCATTTGGGATATTGAAAAGAAAGTGAAATTATTTTAATT
AAAGAAACATACCAATAAACTTTCAACTTGTGCCTTCTCTCATAATAACAAATTGATTGC
AGCCGCTTGTTGGAATGGXXXXXXXXXXTTATTAATTTNATTATTAAAAAAAAAAAAATA
ATAATAAAAAAAACAAATAAAAATTATAAATAATAAAAAAAAAATAATAAAATAATAAAT
AAAAAATA
sequence update 2001.11.22
Translated Amino Acid sequence 
sicnqlsqklldqskkpyfkwvnklqlsdyvigtlaghedfircvlyrddgkliascsdd
ktiriwsgetsslirvfpkvhtdkitsliwrgnqlisvgrdkkilmwdeygkvladfagg
hsnavwgcsvsgdgkrlvtaswdqsaiiwdiekkvklf*LKKHTNKLSTCAFSHNNKLIA
AACWN---

---INXIIKKKKIIIKKTNKNYK**kknnkiinkk
Translated Amino Acid sequence (All Frames) 
Frame A:
fnl*siitetfrsiketil*mg*qitie*lchwyigrs*rfh*mcfis**w*idcfmfr*
*nh*nlew*n*fid*sfpkgsy**nykshler*sidfrw*rqkdfnvg*iw*sfsrfrrw
sfkcslgl*ckw*w*tfshcklgskcnhlgy*keseiiliketyq*tfnlclls**qidc
srllew---

---llixllkkkk***kkqikiinnkkkiik**ikn

Frame B:
sicnqlsqklldqskkpyfkwvnklqlsdyvigtlaghedfircvlyrddgkliascsdd
ktiriwsgetsslirvfpkvhtdkitsliwrgnqlisvgrdkkilmwdeygkvladfagg
hsnavwgcsvsgdgkrlvtaswdqsaiiwdiekkvklf*LKKHTNKLSTCAFSHNNKLIA
AACWN---

---y*fxy*kkknnnkknk*kl*iikkk**nnk*ki

Frame C:
qfvinyhrnf*inqrnhtlngltnyn*vimslvhwqvmkisldvfyivmmvn*llhvpmi
kplefgvvklvh*lefsqrfiliklqvsfgevin*fplvetkrf*cgmnmvkf*pisqvv
iqmqfgvvv*vvmvnv*slqvgikvqsfgilkrk*nyfn*rnipinfqlvpsliitn*lq
plvgm---

---INXIIKKKKIIIKKTNKNYK**kknnkiinkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI888 (VFI888Q) /CSM/VF/VFI8-D/VFI888Q.Seq.d/                       1106   0.0
VHC190 (VHC190Q) /CSM/VH/VHC1-D/VHC190Q.Seq.d/                         36   0.66
SSK718 (SSK718Q) /CSM/SS/SSK7-A/SSK718Q.Seq.d/                         36   0.66
SSD828 (SSD828Q) /CSM/SS/SSD8-B/SSD828Q.Seq.d/                         36   0.66
SHA480 (SHA480Q) /CSM/SH/SHA4-D/SHA480Q.Seq.d/                         36   0.66
FC-AW18 (FC-AW18Q) /CSM/FC/FC-AW/FC-AW18Q.Seq.d/                       36   0.66
CHF459 (CHF459Q) /CSM/CH/CHF4-C/CHF459Q.Seq.d/                         36   0.66
CHC381 (CHC381Q) /CSM/CH/CHC3-D/CHC381Q.Seq.d/                         36   0.66
AHN587 (AHN587Q) /CSM/AH/AHN5-D/AHN587Q.Seq.d/                         36   0.66
AHB889 (AHB889Q) /CSM/AH/AHB8-D/AHB889Q.Seq.d/                         36   0.66
own update 2004. 8.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ414384) Dictyostelium discoideum cDNA clone:ddv18p22, 5' ...  1102   0.0    1
(CZ289000) cp61e05.r Candida parapsilosis Random Genomic Lib...    52   0.027  1
(CZ288102) cp56d03.r Candida parapsilosis Random Genomic Lib...    52   0.027  1
(CZ284505) cp35h10.r Candida parapsilosis Random Genomic Lib...    52   0.027  1
(AF482396) Dictyostelium discoideum ABC transporter AbcG19 (...    50   0.11   1
(AF482391) Dictyostelium discoideum ABC transporter AbcG13 (...    50   0.11   1
(AC132087) Mus musculus BAC clone RP24-407J14 from 9, comple...    42   0.18   2
(CU074295) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.24   2
(DB896215) Populus nigra mRNA, clone: PnFL2-019_E14, 3'end.        48   0.42   1
(CK092555) G087P34.3pR Populus tension wood cDNA library Pop...    48   0.42   1
dna update 2009. 1.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000117_1553(CP000117|pid:none) Anabaena variabilis ATCC 29413,...   101   2e-20
AM746676_3634(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    97   4e-19
CP001037_1323(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    94   3e-18
CP000828_5338(CP000828|pid:none) Acaryochloris marina MBIC11017,...    94   4e-18
CP000686_859(CP000686|pid:none) Roseiflexus sp. RS-1, complete g...    93   6e-18
AM746676_4559(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    92   2e-17
CP001038_141(CP001038|pid:none) Nostoc punctiforme PCC 73102 pla...    91   3e-17
CP001037_1143(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    91   4e-17
CP000492_814(CP000492|pid:none) Chlorobium phaeobacteroides DSM ...    91   4e-17
AG1889(AG1889) WD-40 repeat protein [imported] - Nostoc sp. (str...    90   5e-17
protein update 2009. 6.21
PSORT 

 psg: 0.85  gvh: 0.37  alm: 0.50  top: 0.40  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFI888 is mit
5' end seq. ID VFI888F
5' end seq. 
>VFI888F.Seq
TTCAATTTGTAATCAATTATCACAGAAACTTTTAGATCAATCAAAGAAACCATACTTTAA
ATGGGTTAACAAATTACAATTGAGTGATTATGTCATTGGTACATTGGCAGGTCATGAAGA
TTTCATTAGATGTGTTTTATATCGTGATGATGGTAAATTGATTGCTTCATGTTCCGATGA
TAAAACCATTAGAATTTGGAGTGGTGAAACTAGTTCATTGATTAGAGTTTTCCCAAAGGT
TCATACTGATAAAATTACAAGTCTCATTTGGAGAGGTAATCAATTGATTTCCGTTGGTAG
AGACAAAAAGATTTTAATGTGGGATGAATATGGTAAAGTTTTAGCCGATTTCGCAGGTGG
TCATTCAAATGCAGTTTGGGGTTGTAGTGTAAGTGGTGATGGTAAACGTTTAGTCACTGC
AAGTTGGGATCAAAGTGCAATCATTTGGGATATTGAAAAGAAAGTGAAATTATTTTAATT
AAAGAAACATACCAATAAACTTTCAACTTGTGCCTTCTCTCATAATAACAAATTGATTGC
AGCCGCTTGTTGGAATGGNNNNNNNNNN
Length of 5' end seq. 568
3' end seq. ID VFI888Z
3' end seq. 
>VFI888Z.Seq
NNNNNNNNNNTTATTAATTTNATTATTAAAAAAAAAAAAATAATAATAAAAAAAACAAAT
AAAAATTATAAATAATAAAAAAAAAATAATAAAATAATAAATAAAAAATA
Length of 3' end seq. 110
Connected seq. ID VFI888P
Connected seq. 
>VFI888P.Seq
TTCAATTTGTAATCAATTATCACAGAAACTTTTAGATCAATCAAAGAAACCATACTTTAA
ATGGGTTAACAAATTACAATTGAGTGATTATGTCATTGGTACATTGGCAGGTCATGAAGA
TTTCATTAGATGTGTTTTATATCGTGATGATGGTAAATTGATTGCTTCATGTTCCGATGA
TAAAACCATTAGAATTTGGAGTGGTGAAACTAGTTCATTGATTAGAGTTTTCCCAAAGGT
TCATACTGATAAAATTACAAGTCTCATTTGGAGAGGTAATCAATTGATTTCCGTTGGTAG
AGACAAAAAGATTTTAATGTGGGATGAATATGGTAAAGTTTTAGCCGATTTCGCAGGTGG
TCATTCAAATGCAGTTTGGGGTTGTAGTGTAAGTGGTGATGGTAAACGTTTAGTCACTGC
AAGTTGGGATCAAAGTGCAATCATTTGGGATATTGAAAAGAAAGTGAAATTATTTTAATT
AAAGAAACATACCAATAAACTTTCAACTTGTGCCTTCTCTCATAATAACAAATTGATTGC
AGCCGCTTGTTGGAATGG----------TTATTAATTTNATTATTAAAAAAAAAAAAATA
ATAATAAAAAAAACAAATAAAAATTATAAATAATAAAAAAAAAATAATAAAATAATAAAT
AAAAAATA
Length of connected seq. 658
Full length Seq ID -
Full length Seq. -
Length of full length seq. -