AFM715
Library AF
(Link to library)
Clone ID AFM715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM715P
(Link to Original site)
Representative DNA sequence
>AFM715 (AFM715Q) /CSM/AF/AFM7-A/AFM715Q.Seq.d/
AATTTATTTTTTTTCATTTGTTTCAACATTATTTTTTATATATATTTAACTTTATAATAA
TAAAATTTTTAAAAAAAGTAATAATAATAATAATAATAATTTAATTTTTACTAAATTGGG
AATTATATAAAAAAAAAAAAAAAGGAANTAAAAAAAAAAXXXXXXXXXXGGNGCATCCCC
TTGGAAACAGTCATTATTGTNTTTNAAACCNTTGGGTATGTTATGTTTAATTGGTAANGC
AAGTGGTCCTGNACCNCCNATTNACCCNTTACTNTTGTCAACCAATGGTTCNCTNTTTTT
AACTCGNCCAACTTTGGCTCATTANATCNCTNAAAAAGGTTCAANGGAACAACGTATGAC
ANAAATTTTNTCTTGGGTTGAACAAGGTAAATTGGTTTTATCAAANCCNACNATTATCGA
TTTA
sequence update 2009. 4. 3
Translated Amino Acid sequence
fiffhlfqhyflyifnfiiikflkkviiiiiii*FLLNWELYKKKKKGXKKK---

---GASPWKQSLLXXKPLGMLCLIGXASGPXPPIXPLLLSTNGSLFLTRPTLAHXIXXKG
SXEQRMTXIXSWVEQGKLVLSXPTIIDL


Translated Amino Acid sequence (All Frames)
Frame A:
nlffficfniifyiyltl***nf*kk*******fnfy*ignyikkkkkexkkk---

---GASPWKQSLLXXKPLGMLCLIGXASGPXPPIXPLLLSTNGSLFLTRPTLAHXIXXKG
SXEQRMTXIXSWVEQGKLVLSXPTIIDL

Frame B:
iyffsfvstlffiyi*lynnkifkksnnnnnnnliftklgii*kkkkrx*kk---

---xhplgnshycxxnxwvcyv*lvxqvvlxxxxtxyxcqpmvxxf*lxqlwlixslkkv
qxnnv*xkfxlglnkvnwfyqxxxlsi

Frame C:
fiffhlfqhyflyifnfiiikflkkviiiiiii*FLLNWELYKKKKKGXKKK---

---xipletviivfxtxgyvmfnw*xkwsxtxxxpxtxvnqwfxxfnsxnfgslxxxkrf
xgttydxnfxlg*tr*igfikxxxyrf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM715 (AFM715Q) /CSM/AF/AFM7-A/AFM715Q.Seq.d/ 333 1e-90
SLD421 (SLD421Q) /CSM/SL/SLD4-A/SLD421Q.Seq.d/ 325 3e-88
VFJ674 (VFJ674Q) /CSM/VF/VFJ6-D/VFJ674Q.Seq.d/ 283 1e-75
AHE734 (AHE734Q) /CSM/AH/AHE7-B/AHE734Q.Seq.d/ 56 4e-07
AHA829 (AHA829Q) /CSM/AH/AHA8-B/AHA829Q.Seq.d/ 56 4e-07
VFO756 (VFO756Q) /CSM/VF/VFO7-C/VFO756Q.Seq.d/ 34 1.6
VFN391 (VFN391Q) /CSM/VF/VFN3-D/VFN391Q.Seq.d/ 34 1.6
VFN268 (VFN268Q) /CSM/VF/VFN2-C/VFN268Q.Seq.d/ 34 1.6
VFM404 (VFM404Q) /CSM/VF/VFM4-A/VFM404Q.Seq.d/ 34 1.6
VFL725 (VFL725Q) /CSM/VF/VFL7-B/VFL725Q.Seq.d/ 34 1.6

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347126) Dictyostelium discoideum cDNA clone:dda26n03, 3' ... 367 2e-97 1
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 359 6e-95 1
(AU052496) Dictyostelium discoideum slug cDNA, clone SLD421. 359 6e-95 1
(BJ433092) Dictyostelium discoideum cDNA clone:ddv20c20, 3' ... 317 2e-82 1
(AC209912) Zea mays chromosome unknown clone CH201-363H22; Z... 44 4.2 1

dna update 2009. 4.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115682_13(AC115682|pid:none) Dictyostelium discoideum chromoso... 98 8e-20
CP000473_7322(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 40 0.024
CP001032_1167(CP001032|pid:none) Opitutus terrae PB90-1, complet... 40 0.032
CP000431_7116(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 38 0.092
BA000035_1690(BA000035|pid:none) Corynebacterium efficiens YS-31... 36 0.46
BX950851_3637(BX950851|pid:none) Erwinia carotovora subsp. atros... 35 0.78
CP000686_1436(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 35 0.78
AM420293_2115(AM420293|pid:none) Saccharopolyspora erythraea NRR... 35 1.0
CP000804_2022(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 35 1.0
CP000269_551(CP000269|pid:none) Janthinobacterium sp. Marseille,... 34 1.3
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM715 is

5' end seq. ID AFM715F
5' end seq.
>AFM715F.Seq
AATTTATTTTTTTTCATTTGTTTCAACATTATTTTTTATATATATTTAACTTTATAATAA
TAAAATTTTTAAAAAAAGTAATAATAATAATAATAATAATTTAATTTTTACTAAATTGGG
AATTATATAAAAAAAAAAAAAAAGGAANTAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 169
3' end seq. ID AFM715Z
3' end seq.
>AFM715Z.Seq
XXXXXXXXXXGGNGCATCCCCTTGGAAACAGTCATTATTGTNTTTNAAACCNTTGGGTAT
GTTATGTTTAATTGGTAANGCAAGTGGTCCTGNACCNCCNATTNACCCNTTACTNTTGTC
AACCAATGGTTCNCTNTTTTTAACTCGNCCAACTTTGGCTCATTANATCNCTNAAAAAGG
TTCAANGGAACAACGTATGACANAAATTTTNTCTTGGGTTGAACAAGGTAAATTGGTTTT
ATCAAANCCNACNATTATCGATTTA
Length of 3' end seq. 265
Connected seq. ID AFM715P
Connected seq.
>AFM715P.Seq
AATTTATTTTTTTTCATTTGTTTCAACATTATTTTTTATATATATTTAACTTTATAATAA
TAAAATTTTTAAAAAAAGTAATAATAATAATAATAATAATTTAATTTTTACTAAATTGGG
AATTATATAAAAAAAAAAAAAAAGGAANTAAAAAAAAAA----------GGNGCATCCCC
TTGGAAACAGTCATTATTGTNTTTNAAACCNTTGGGTATGTTATGTTTAATTGGTAANGC
AAGTGGTCCTGNACCNCCNATTNACCCNTTACTNTTGTCAACCAATGGTTCNCTNTTTTT
AACTCGNCCAACTTTGGCTCATTANATCNCTNAAAAAGGTTCAANGGAACAACGTATGAC
ANAAATTTTNTCTTGGGTTGAACAAGGTAAATTGGTTTTATCAAANCCNACNATTATCGA
TTTA
Length of connected seq. 414
Full length Seq ID -
Full length Seq. -
Length of full length seq. -