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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM713
Library AF
(Link to library)
Clone ID AFM713
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM713P
(Link to Original site)
Representative DNA sequence 
>AFM713 (AFM713Q) /CSM/AF/AFM7-A/AFM713Q.Seq.d/
TCAATATTGCGAGACGAAATCATCACACTTATGTATATAAAATAAAAAAATGTTAGGATT
AACTGATATGTTAAAAGATGGTGCAAAGCATTTTGCAGGCAAAGATGAAGCAATCTTAAG
AAATATTGATGCAACCAAACAATTATCAGAGATTACAAGAACATCATTAGGTCCAAATGG
TATGAATAAAATGATCATCAATCATTTAGAGAAATTATTTGTTACAAATGATGCCGCAAC
CATCATTAGAGAATTAGATGTTATTCATCCAGCTGCAAAAATGTTGGTTATGGCTGCTCA
AATGCAAGAACAAGAAATGGGAGATGGTACAAATTATGTTGTTACATTAACAGGTGAATT
TTTACAAAAAGCAGCAACTTTATTAGAGATGGGACTTCACCCAAGTGAAATTATAACTGG
TTTTGAAAAAGCAGGTGCTAAACTTCAAGAGATTATTGAATCAATGATTGTATACAATTT
AAAGGATATTACAGATAAGAAXXXXXXXXXXGTTTTGAAAAAGCAGGTGCTAAACTTCAA
GAGATTATTGAATCAATGATTGTATACAATTTAAAGGATATTACAGATAAGAAGGAGGTT
ACAAAATGTTTGAAATCAGCCATCGCAAGTAAACAATATGGGGATGAGGAATTTTTATCA
GAGATTATCACCAATGCATGTCTTCAAGTTTTACCAAAGAAAGCAGTTAATTTCAATATC
GATAATGTTAGAGTCACCAAGATTCCAGGTGGTGGCGTAACTGATACAAGTGTAATCAAA
GGTTTCGTCATCCCAATGGATGCCGAAGGTACCATCAAAAGAATGGAGAAAGCAAAAATC
GCCGTTTTCACAATGGGTATCGATTTAGGTCGTACTGAAACCACTGGTAAAGTATTGATC
ACCAACGAGGATGAATTGTTACAATTCTCCAAAGGTGAGGAAGATTCAATCAGAGAGACA
ATCACTGCCATCGCAAATACCGGTGTCAAAGTGATCATCTCTGGTTCAACCGTTTCCGAA
TTGGCTTTACATTACATTGAAAGATTCAAAATCATGTTGGTTCGTATTCAATCTAAATTC
CAATTACGTCGTGTTTGTAAAGCAATCGGTGCAACTCCATTAGTTAAATTGGGTGCCCCT
ATCCCTGAGGAATTGGGTTACTGTGATGAAGTACTCG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
qycetksshlci*NKKMLGLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNG
MNKMIINHLEKLFVTNDAATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEF
LQKAATLLEMGLHPSEIITGFEKAGAKLQEIIESMIVYNLKDITDK---

---FEKAGAKLQEIIESMIVYNLKDITDKKEVTKCLKSAIASKQYGDEEFLSEIITNACL
QVLPKKAVNFNIDNVRVTKIPGGGVTDTSVIKGFVIPMDAEGTIKRMEKAKIAVFTMGID
LGRTETTGKVLITNEDELLQFSKGEEDSIRETITAIANTGVKVIISGSTVSELALHYIER
FKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVL
Translated Amino Acid sequence (All Frames) 
Frame A:
silrdeiitlmyik*knvrin*yvkrwckafcrqr*snlkky*cnqtiirdykniirskw
ye*ndhqsfreiicyk*crnhh*rircyssscknvgygcsnartrngrwyklccyinr*i
ftkssnfirdgtspk*nynwf*ksrc*tsrdy*indciqfkgyyr*e---

---vlkkqvlnfkrllnq*lyti*rilqirrrlqnv*nqpsqvnnmgmrnfyqrlspmhv
fkfyqrkqlisisimlesprfqvva*liqv*skvsssqwmpkvpskewrkqkspfsqwvs
i*vvlkplvky*sptrmncynspkvrkiqserqslpsqipvsk*sslvqpfpnwlyitlk
dskscwfvfnlnsnyvvfvkqsvqlh*lnwvplslrnwvtvmkys

Frame B:
qycetksshlci*NKKMLGLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNG
MNKMIINHLEKLFVTNDAATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEF
LQKAATLLEMGLHPSEIITGFEKAGAKLQEIIESMIVYNLKDITDK---

---f*ksrc*tsrdy*indciqfkgyyr*eggykmfeishrk*tiwg*gifirdyhqcms
ssftkess*fqyr*c*shqdsrwwrn*ykcnqrfrhpngcrryhqkngesknrrfhngyr
frsy*nhw*sidhqrg*ivtilqr*grfnqrdnhchrkyrcqsdhlwfnrfrigftlh*k
iqnhvgsysi*ipitscl*snrcnsis*igcpyp*gigll**st

Frame C:
niarrnhhtyvykikkc*d*lic*kmvqsilqakmkqs*eilmqpnnyqrlqehh*vqmv
*ik*ssii*rnyllqmmpqpslen*mlfiqlqkcwlwllkcknkkwemvqimllh*qvnf
ykkqqly*rwdftqvkl*lvlkkqvlnfkrllnq*lyti*rilqir---

---FEKAGAKLQEIIESMIVYNLKDITDKKEVTKCLKSAIASKQYGDEEFLSEIITNACL
QVLPKKAVNFNIDNVRVTKIPGGGVTDTSVIKGFVIPMDAEGTIKRMEKAKIAVFTMGID
LGRTETTGKVLITNEDELLQFSKGEEDSIRETITAIANTGVKVIISGSTVSELALHYIER
FKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM713 (AFM713Q) /CSM/AF/AFM7-A/AFM713Q.Seq.d/                       2232   0.0
VFA682 (VFA682Q) /CSM/VF/VFA6-D/VFA682Q.Seq.d/                       1205   0.0
VFM225 (VFM225Q) /CSM/VF/VFM2-B/VFM225Q.Seq.d/                        944   0.0
VFL502 (VFL502Q) /CSM/VF/VFL5-A/VFL502Q.Seq.d/                        944   0.0
VFF643 (VFF643Q) /CSM/VF/VFF6-B/VFF643Q.Seq.d/                        944   0.0
VFE206 (VFE206Q) /CSM/VF/VFE2-A/VFE206Q.Seq.d/                        944   0.0
SLC786 (SLC786Q) /CSM/SL/SLC7-D/SLC786Q.Seq.d/                        944   0.0
SFD843 (SFD843Q) /CSM/SF/SFD8-B/SFD843Q.Seq.d/                        944   0.0
SFD263 (SFD263Q) /CSM/SF/SFD2-C/SFD263Q.Seq.d/                        944   0.0
SFB668 (SFB668Q) /CSM/SF/SFB6-C/SFB668Q.Seq.d/                        944   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347106) Dictyostelium discoideum cDNA clone:dda26j03, 3' ...  1318   0.0    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...  1302   0.0    1
(BJ411034) Dictyostelium discoideum cDNA clone:ddv2c22, 5' e...  1104   0.0    1
(BJ329222) Dictyostelium discoideum cDNA clone:dda24a08, 5' ...   894   0.0    4
(BJ329767) Dictyostelium discoideum cDNA clone:dda26p05, 5' ...   894   0.0    3
(BJ329743) Dictyostelium discoideum cDNA clone:dda26j03, 5' ...   894   0.0    2
(BJ328896) Dictyostelium discoideum cDNA clone:dda30b05, 5' ...   894   0.0    2
(BJ415871) Dictyostelium discoideum cDNA clone:ddv24c01, 5' ...   894   0.0    2
(BJ328856) Dictyostelium discoideum cDNA clone:dda29e23, 5' ...   894   0.0    2
(BJ410377) Dictyostelium discoideum cDNA clone:ddv12e12, 5' ...   894   0.0    2
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_86(AC116979|pid:none) Dictyostelium discoideum chromoso...   424   e-117
AF442548_1(AF442548|pid:none) Physarum polycephalum CCT chaperon...   248   2e-64
CU633900_580(CU633900|pid:none) Podospora anserina genomic DNA c...   222   2e-56
AC011698_7(AC011698|pid:none) Arabidopsis thaliana chromosome II...   220   8e-56
AP007155_1086(AP007155|pid:none) Aspergillus oryzae RIB40 genomi...   219   2e-55
AM270081_39(AM270081|pid:none) Aspergillus niger contig An04c020...   219   2e-55
D89272_1(D89272|pid:none) Schizosaccharomyces pombe mRNA, partia...   217   7e-55
(P78921) RecName: Full=Probable T-complex protein 1 subunit thet...   217   7e-55
EF085165_1(EF085165|pid:none) Picea sitchensis clone WS0282_A10 ...   216   2e-54
EF147285_1(EF147285|pid:none) Populus trichocarpa clone WS0122_E...   214   3e-54
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM713 is

5' end seq. ID AFM713F
5' end seq. 
>AFM713F.Seq
TCAATATTGCGAGACGAAATCATCACACTTATGTATATAAAATAAAAAAATGTTAGGATT
AACTGATATGTTAAAAGATGGTGCAAAGCATTTTGCAGGCAAAGATGAAGCAATCTTAAG
AAATATTGATGCAACCAAACAATTATCAGAGATTACAAGAACATCATTAGGTCCAAATGG
TATGAATAAAATGATCATCAATCATTTAGAGAAATTATTTGTTACAAATGATGCCGCAAC
CATCATTAGAGAATTAGATGTTATTCATCCAGCTGCAAAAATGTTGGTTATGGCTGCTCA
AATGCAAGAACAAGAAATGGGAGATGGTACAAATTATGTTGTTACATTAACAGGTGAATT
TTTACAAAAAGCAGCAACTTTATTAGAGATGGGACTTCACCCAAGTGAAATTATAACTGG
TTTTGAAAAAGCAGGTGCTAAACTTCAAGAGATTATTGAATCAATGATTGTATACAATTT
AAAGGATATTACAGATAAGAAXXXXXXXXXX
Length of 5' end seq. 511
3' end seq. ID AFM713Z
3' end seq. 
>AFM713Z.Seq
XXXXXXXXXXGTTTTGAAAAAGCAGGTGCTAAACTTCAAGAGATTATTGAATCAATGATT
GTATACAATTTAAAGGATATTACAGATAAGAAGGAGGTTACAAAATGTTTGAAATCAGCC
ATCGCAAGTAAACAATATGGGGATGAGGAATTTTTATCAGAGATTATCACCAATGCATGT
CTTCAAGTTTTACCAAAGAAAGCAGTTAATTTCAATATCGATAATGTTAGAGTCACCAAG
ATTCCAGGTGGTGGCGTAACTGATACAAGTGTAATCAAAGGTTTCGTCATCCCAATGGAT
GCCGAAGGTACCATCAAAAGAATGGAGAAAGCAAAAATCGCCGTTTTCACAATGGGTATC
GATTTAGGTCGTACTGAAACCACTGGTAAAGTATTGATCACCAACGAGGATGAATTGTTA
CAATTCTCCAAAGGTGAGGAAGATTCAATCAGAGAGACAATCACTGCCATCGCAAATACC
GGTGTCAAAGTGATCATCTCTGGTTCAACCGTTTCCGAATTGGCTTTACATTACATTGAA
AGATTCAAAATCATGTTGGTTCGTATTCAATCTAAATTCCAATTACGTCGTGTTTGTAAA
GCAATCGGTGCAACTCCATTAGTTAAATTGGGTGCCCCTATCCCTGAGGAATTGGGTTAC
TGTGATGAAGTACTCG
Length of 3' end seq. 676
Connected seq. ID AFM713P
Connected seq. 
>AFM713P.Seq
TCAATATTGCGAGACGAAATCATCACACTTATGTATATAAAATAAAAAAATGTTAGGATT
AACTGATATGTTAAAAGATGGTGCAAAGCATTTTGCAGGCAAAGATGAAGCAATCTTAAG
AAATATTGATGCAACCAAACAATTATCAGAGATTACAAGAACATCATTAGGTCCAAATGG
TATGAATAAAATGATCATCAATCATTTAGAGAAATTATTTGTTACAAATGATGCCGCAAC
CATCATTAGAGAATTAGATGTTATTCATCCAGCTGCAAAAATGTTGGTTATGGCTGCTCA
AATGCAAGAACAAGAAATGGGAGATGGTACAAATTATGTTGTTACATTAACAGGTGAATT
TTTACAAAAAGCAGCAACTTTATTAGAGATGGGACTTCACCCAAGTGAAATTATAACTGG
TTTTGAAAAAGCAGGTGCTAAACTTCAAGAGATTATTGAATCAATGATTGTATACAATTT
AAAGGATATTACAGATAAGAA----------GTTTTGAAAAAGCAGGTGCTAAACTTCAA
GAGATTATTGAATCAATGATTGTATACAATTTAAAGGATATTACAGATAAGAAGGAGGTT
ACAAAATGTTTGAAATCAGCCATCGCAAGTAAACAATATGGGGATGAGGAATTTTTATCA
GAGATTATCACCAATGCATGTCTTCAAGTTTTACCAAAGAAAGCAGTTAATTTCAATATC
GATAATGTTAGAGTCACCAAGATTCCAGGTGGTGGCGTAACTGATACAAGTGTAATCAAA
GGTTTCGTCATCCCAATGGATGCCGAAGGTACCATCAAAAGAATGGAGAAAGCAAAAATC
GCCGTTTTCACAATGGGTATCGATTTAGGTCGTACTGAAACCACTGGTAAAGTATTGATC
ACCAACGAGGATGAATTGTTACAATTCTCCAAAGGTGAGGAAGATTCAATCAGAGAGACA
ATCACTGCCATCGCAAATACCGGTGTCAAAGTGATCATCTCTGGTTCAACCGTTTCCGAA
TTGGCTTTACATTACATTGAAAGATTCAAAATCATGTTGGTTCGTATTCAATCTAAATTC
CAATTACGTCGTGTTTGTAAAGCAATCGGTGCAACTCCATTAGTTAAATTGGGTGCCCCT
ATCCCTGAGGAATTGGGTTACTGTGATGAAGTACTCG
Length of connected seq. 1167
Full length Seq ID -
Full length Seq. -
Length of full length seq. -