VFI784
Library VF
(Link to library)
Clone ID VFI784
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14973-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFI784 (VFI784Q) /CSM/VF/VFI7-D/VFI784Q.Seq.d/
XXXXXXXXXXAAGTTAACCACGTTANACAAACTANANATCCNATTGAAAACNTTNGTCGG
ATCATCTTGGACAATAAAATCGCAACTGAAGATCAACTCGCTGCCATCGAAGAAACCGTT
AGAGATGAGAATGGAAAAAGCCTNGTGTNAAAAGCNATCNCTGCTCCATTACCACNAGCT
CGTGNACTCTTNNCCCACGTTTACCTCCAAGAAGTTCCAGTAAGAGGTGTTGAATTTGTN
NACAGNTTCNAACCATAAATTAAT
sequence update 2001.11.22
Translated Amino Acid sequence
---VNHVXQTXXPIENXXRIILDNKIATEDQLAAIEETVRDENGKSLVXKAIXAPLPXAR
XLXXHVYLQEVPVRGVEFVXXFXP*in


Translated Amino Acid sequence (All Frames)
Frame A:
---s*prxtnxxsx*kxxsdhlgq*nrn*rstrchrrnr*r*ewkkpxvksxxcsittss
xtlxprlpprssskrc*icxqxxtin*


Frame B:
---VNHVXQTXXPIENXXRIILDNKIATEDQLAAIEETVRDENGKSLVXKAIXAPLPXAR
XLXXHVYLQEVPVRGVEFVXXFXP*in


Frame C:
---lttlxklxixlktxvgsswtiksqlkinslpskkplemrmekaxcxkxsllhyhxlv
xsxptftskkfq*evlnlxtxsnhkl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI784 (VFI784Q) /CSM/VF/VFI7-D/VFI784Q.Seq.d/ 396 e-110
VSJ317 (VSJ317Q) /CSM/VS/VSJ3-A/VSJ317Q.Seq.d/ 325 2e-88
VSF138 (VSF138Q) /CSM/VS/VSF1-B/VSF138Q.Seq.d/ 325 2e-88
VSE626 (VSE626Q) /CSM/VS/VSE6-B/VSE626Q.Seq.d/ 325 2e-88
SSE806 (SSE806Q) /CSM/SS/SSE8-A/SSE806Q.Seq.d/ 325 2e-88
SSE241 (SSE241Q) /CSM/SS/SSE2-B/SSE241Q.Seq.d/ 325 2e-88
SLI178 (SLI178Q) /CSM/SL/SLI1-D/SLI178Q.Seq.d/ 325 2e-88
SFI644 (SFI644Q) /CSM/SF/SFI6-B/SFI644Q.Seq.d/ 325 2e-88
SFI495 (SFI495Q) /CSM/SF/SFI4-D/SFI495Q.Seq.d/ 325 2e-88
SFI357 (SFI357Q) /CSM/SF/SFI3-C/SFI357Q.Seq.d/ 325 2e-88

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ432489) Dictyostelium discoideum cDNA clone:ddv18h21, 3' ... 396 e-106 1
(BJ402613) Dictyostelium discoideum cDNA clone:dds17b15, 3' ... 182 5e-87 3
(BJ402760) Dictyostelium discoideum cDNA clone:dds17n24, 3' ... 182 5e-87 3
(C92486) Dictyostelium discoideum slug cDNA, clone SSE806. 182 5e-87 3
(AU053227) Dictyostelium discoideum slug cDNA, clone SLI178. 182 5e-87 3
(AU037743) Dictyostelium discoideum slug cDNA, clone SSE241. 182 5e-87 3
(AU263247) Dictyostelium discoideum vegetative cDNA clone:VS... 182 5e-87 3
(AU269743) Dictyostelium discoideum vegetative cDNA clone:VS... 182 5e-87 3
(AU264763) Dictyostelium discoideum vegetative cDNA clone:VS... 182 5e-87 3
(BJ342318) Dictyostelium discoideum cDNA clone:dda13o07, 3' ... 176 3e-85 3
dna update 2009. 1. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C70) RecName: Full=Pyruvate dehydrogenase E1 component subun... 108 6e-23
(Q8H1Y0) RecName: Full=Pyruvate dehydrogenase E1 component subun... 40 0.033
(P52902) RecName: Full=Pyruvate dehydrogenase E1 component subun... 39 0.043
AK318970_1(AK318970|pid:none) Arabidopsis thaliana AT1G59900 mRN... 38 0.095
EU186336_1(EU186336|pid:none) Brassica rapa clone S66 pyruvate d... 38 0.095
CP000576_1474(CP000576|pid:none) Prochlorococcus marinus str. MI... 38 0.12
AY623918_1(AY623918|pid:none) Nyctotherus ovalis pyruvate dehydr... 38 0.12
AY623920_1(AY623920|pid:none) Nyctotherus ovalis pyruvate dehydr... 37 0.21
CP000551_1483(CP000551|pid:none) Prochlorococcus marinus str. AS... 37 0.21
CP000825_1511(CP000825|pid:none) Prochlorococcus marinus str. MI... 36 0.47
protein update 2009. 6.21
PSORT

psg: 0.78 gvh: 0.45 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFI784 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFI784Z
3' end seq.
>VFI784Z.Seq
NNNNNNNNNNAAGTTAACCACGTTANACAAACTANANATCCNATTGAAAACNTTNGTCGG
ATCATCTTGGACAATAAAATCGCAACTGAAGATCAACTCGCTGCCATCGAAGAAACCGTT
AGAGATGAGAATGGAAAAAGCCTNGTGTNAAAAGCNATCNCTGCTCCATTACCACNAGCT
CGTGNACTCTTNNCCCACGTTTACCTCCAAGAAGTTCCAGTAAGAGGTGTTGAATTTGTN
NACAGNTTCNAACCATAAATTAAT
Length of 3' end seq. 264
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -