VFI753
Library VF
(Link to library)
Clone ID VFI753
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10430-1
Original site URL
Representative seq. ID VFI753P
(Link to Original site)
Representative DNA sequence
>VFI753 (VFI753Q) /CSM/VF/VFI7-C/VFI753Q.Seq.d/
GATTTAAATTTTTTCAATCATAAAAATAATTGTATAGTGTTATAAAATGGTACCACAAAG
CAAAGATGATGTAAAAATACAATTAAATGTACAAGAATATATCATATCAAATGATTTTGA
AAATAATTACAATGTAACAATTTCAAGAATTATTAACATTCGATATAAAGAAGATATAAT
AAAATAGTTTTAATAACACATAAAAGCTTCATGGAAAATTTTGAAAAAATTAAAACCATC
AAAAATTGCATTAATATAAATTCATTAAAAATACATTTTGATAATTGCACAAAAAAAAAA
XXXXXXXXXXGATTTAAATTTTTTCAATCATAAAAATAATTGTATAGTGTTATAAAATGG
TACCACAAAGCAAAGATGATGTAAAAATACAATTAAATGTACAAGAATATATCATATCAA
ATGATTTTGAAAATAATTACAATGTAACAATTTCAAGAATTATTAACATTCGATATAAAG
AAGATATAATAAAATAGTTTTAATAACACATAAAAGCTTCATGGAAAATTTTAAAAAATT
AAAACCATCAAAAATTGCATTAATATAAATTCATTAAAAATACATTT
sequence update 2001.11.22
Translated Amino Acid sequence
dlnffnhknncivl*ngttkqr*ckntikctriyhik*f*k*lqcnnfkny*hsi*RRYN
KIVLITHKSFMENFEKIKTIKNCININSLKIHFDNCTKKK---

---DLNFFNHKNNCIVL*ngttkqr*ckntikctriyhik*f*k*lqcnnfkny*hsi*r
rynkivlithksfmenfkklkpskiali*ih*kyi


Translated Amino Acid sequence (All Frames)
Frame A:
dlnffnhknncivl*ngttkqr*ckntikctriyhik*f*k*lqcnnfkny*hsi*RRYN
KIVLITHKSFMENFEKIKTIKNCININSLKIHFDNCTKKK---

---DLNFFNHKNNCIVL*ngttkqr*ckntikctriyhik*f*k*lqcnnfkny*hsi*r
rynkivlithksfmenfkklkpskiali*ih*kyi

Frame B:
i*ifsiikiiv*cykmvpqskddvkiqlnvqeyiisndfennynvtisriinirykedii
k*f**hikaswkilkklkpskiali*ih*kyiliiaqkk---

---i*ifsiikiiv*cykmvpqskddvkiqlnvqeyiisndfennynvtisriiniryke
diik*f**hikaswkilkn*nhqklh*ykfikntf

Frame C:
fkffqs*k*lysvikwyhkakmm*kyn*myknisyqmilkiitm*qfqelltfdikki**
nsfnnt*klhgkf*kn*nhqklh*ykfikntf**lhkkk---

---fkffqs*k*lysvikwyhkakmm*kyn*myknisyqmilkiitm*qfqelltfdikk
i**nsfnnt*klhgkf*kiktikncininslkih

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI753 (VFI753Q) /CSM/VF/VFI7-C/VFI753Q.Seq.d/ 444 e-124
VHP882 (VHP882Q) /CSM/VH/VHP8-D/VHP882Q.Seq.d/ 36 0.58
VHK489 (VHK489Q) /CSM/VH/VHK4-D/VHK489Q.Seq.d/ 36 0.58
CFJ682 (CFJ682Q) /CSM/CF/CFJ6-D/CFJ682Q.Seq.d/ 36 0.58
AFM301 (AFM301Q) /CSM/AF/AFM3-A/AFM301Q.Seq.d/ 36 0.58
VSC742 (VSC742Q) /CSM/VS/VSC7-B/VSC742Q.Seq.d/ 34 2.3
VFI133 (VFI133Q) /CSM/VF/VFI1-B/VFI133Q.Seq.d/ 34 2.3
SSK759 (SSK759Q) /CSM/SS/SSK7-C/SSK759Q.Seq.d/ 34 2.3
SHG770 (SHG770Q) /CSM/SH/SHG7-C/SHG770Q.Seq.d/ 34 2.3
SHD681 (SHD681Q) /CSM/SH/SHD6-D/SHD681Q.Seq.d/ 34 2.3

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 392 e-105 1
(BJ432414) Dictyostelium discoideum cDNA clone:ddv18j13, 3' ... 392 e-105 1
(BJ414279) Dictyostelium discoideum cDNA clone:ddv18j13, 5' ... 392 e-105 1
(BX640582) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.003 10
(AE017243) Mycoplasma hyopneumoniae J, complete genome. 34 0.006 13
(FH467841) CHO_OF4962xj18r1.ab1 CHO_OF4 Nicotiana tabacum ge... 38 0.007 2
(EA717264) Sequence 96143 from patent US 7365185. 46 0.016 2
(BH980133) odg45a04.b1 B.oleracea002 Brassica oleracea genom... 42 0.050 2
(AC136307) Homo sapiens chromosome 11 clone RP11-146D24 map ... 44 0.088 3
(CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 50 0.090 1
dna update 2009. 1. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000107_484(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 33 7.4

protein update 2009. 2.15
PSORT

psg: 0.77 gvh: 0.14 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.02
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: nuclear
20.0 %: plasma membrane
12.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: cytoplasmic
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for VFI753 is nuc

5' end seq. ID VFI753F
5' end seq.
>VFI753F.Seq
GATTTAAATTTTTTCAATCATAAAAATAATTGTATAGTGTTATAAAATGGTACCACAAAG
CAAAGATGATGTAAAAATACAATTAAATGTACAAGAATATATCATATCAAATGATTTTGA
AAATAATTACAATGTAACAATTTCAAGAATTATTAACATTCGATATAAAGAAGATATAAT
AAAATAGTTTTAATAACACATAAAAGCTTCATGGAAAATTTTGAAAAAATTAAAACCATC
AAAAATTGCATTAATATAAATTCATTAAAAATACATTTTGATAATTGCACAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 310
3' end seq. ID VFI753Z
3' end seq.
>VFI753Z.Seq
NNNNNNNNNNGATTTAAATTTTTTCAATCATAAAAATAATTGTATAGTGTTATAAAATGG
TACCACAAAGCAAAGATGATGTAAAAATACAATTAAATGTACAAGAATATATCATATCAA
ATGATTTTGAAAATAATTACAATGTAACAATTTCAAGAATTATTAACATTCGATATAAAG
AAGATATAATAAAATAGTTTTAATAACACATAAAAGCTTCATGGAAAATTTTAAAAAATT
AAAACCATCAAAAATTGCATTAATATAAATTCATTAAAAATACATTT
Length of 3' end seq. 287
Connected seq. ID VFI753P
Connected seq.
>VFI753P.Seq
GATTTAAATTTTTTCAATCATAAAAATAATTGTATAGTGTTATAAAATGGTACCACAAAG
CAAAGATGATGTAAAAATACAATTAAATGTACAAGAATATATCATATCAAATGATTTTGA
AAATAATTACAATGTAACAATTTCAAGAATTATTAACATTCGATATAAAGAAGATATAAT
AAAATAGTTTTAATAACACATAAAAGCTTCATGGAAAATTTTGAAAAAATTAAAACCATC
AAAAATTGCATTAATATAAATTCATTAAAAATACATTTTGATAATTGCACAAAAAAAAAA
----------GATTTAAATTTTTTCAATCATAAAAATAATTGTATAGTGTTATAAAATGG
TACCACAAAGCAAAGATGATGTAAAAATACAATTAAATGTACAAGAATATATCATATCAA
ATGATTTTGAAAATAATTACAATGTAACAATTTCAAGAATTATTAACATTCGATATAAAG
AAGATATAATAAAATAGTTTTAATAACACATAAAAGCTTCATGGAAAATTTTAAAAAATT
AAAACCATCAAAAATTGCATTAATATAAATTCATTAAAAATACATTT
Length of connected seq. 577
Full length Seq ID -
Full length Seq. -
Length of full length seq. -