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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI734
Library VF
(Link to library)
Clone ID VFI734
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11967-1
Original site URL
Representative seq. ID VFI734P
(Link to Original site)
Representative DNA sequence 
>VFI734 (VFI734Q) /CSM/VF/VFI7-B/VFI734Q.Seq.d/
AAAAGAAAAAATAAAAAATGACAAAAGTTGAAACTCTTGAATTTCCAAGAAGAAAAAAGG
AATCAAATGAAAATTCAACCTTATCACAACCAGATGCAGCAGCTGAATTAAATAAAGATG
ACAAAGAAACTGACCCTTCAACACTTTCAAAAGAAGAATGTATTAAAAAATCTGATGAAT
ATAAAGCAATTGCAAATAAACATTTTAGTGAACAAAAATATGATTTAGCAGCAGAAGTTT
ATACAAAAGCAATTAAATATCATCCAACAGCAATTTTATATTCAAATAGATCATTTTCAA
ATTTTAAGAATGAGTTATATGTAAATGCATTACAAGATGCTCAAACCTCTCATGAAATGG
ATCCAACTTACATAAAAGCATATTATCGTTTAGGTAGTGCACATTTAGCATTAAGAAATT
TTGAAGAAGCAAAACACTTTTTCAAAGAACTCTTAACAAAGAATCCAAAAGAAAATGATG
CAAAGATTAAATTAAATCTTTGTAATAATTTAATTAAAGCAAAATTATTTGAAGATGCAA
TTTTAATTACACCTGAATCATATTTTAAAGAATTAGATATTAATTCAATGAATGTTGAAG
AATCAXXXXXXXXXXATACACATGGTCAATTCTATGATCTTTTGAATATATTTAAGATTA
ATGGATCACCATCAGAGGAGAAACCATACCTTTTCAATGGCGACTTTGTGGATAGGGGTA
GTTTTAGTTTTGAAATTATCATCACTCTATTGGCTTATAAATTATTGTACCCAAATCATA
TGCATTTGACAAGGGGTAACCATGAGACAACCGATATGAATCGTTTCTATGGTTTCCAAG
GCGAAGTGGTTGCAAAATACAGTGAGATGGTATTCGATCTATTCTCAGAGTTGTTCAATT
GGTTCCCATTGGCATTCGTGTTGGATGAATCGTTTATGGTGGTACATGGTGGTTTGTTTG
GTAAGGATGGTGTCACACTTGACGATATTAGAAAGATTAAACGTAATGCACCAGATCCAA
AAGATAATGAATTGGTTCAATGCTTACTTTGGTCTGATCCTCAATCAAATCCTGGTATTG
CTCCTTCTTCAAGAGGTGTAGGTGTTTACTTTGGACCTGATGTCACCAGACGTTTCCTCA
AGGAAAATAATCTATCAACTATCATTAGATCTCATGAAGTTAAAGAAAAAGGTTATCAAA
TCGATGATGATGGTTCTCTCATCACTGTTTTCTCTGCTCCAAATTATTGTGATCAATCTG
GTAATCTTGGCTCATTTATAAATATAACTGAAGATAAAATTAAAATTACAACTTTGAAGC
TGTGAACATCCGAATATACCACCAATGCATTAGCCAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
kkk*KMTKVETLEFPRRKKESNENSTLSQPDAAAELNKDDKETDPSTLSKEECIKKSDEY
KAIANKHFSEQKYDLAAEVYTKAIKYHPTAILYSNRSFSNFKNELYVNALQDAQTSHEMD
PTYIKAYYRLGSAHLALRNFEEAKHFFKELLTKNPKENDAKIKLNLCNNLIKAKLFEDAI
LITPESYFKELDINSMNVEES---

---THGQFYDLLNIFKINGSPSEEKPYLFNGDFVDRGSFSFEIIITLLAYKLLYPNHMHL
TRGNHETTDMNRFYGFQGEVVAKYSEMVFDLFSELFNWFPLAFVLDESFMVVHGGLFGKD
GVTLDDIRKIKRNAPDPKDNELVQCLLWSDPQSNPGIAPSSRGVGVYFGPDVTRRFLKEN
NLSTIIRSHEVKEKGYQIDDDGSLITVFSAPNYCDQSGNLGSFINITEDKIKITTLKL*t
seyttnalakk
Translated Amino Acid sequence (All Frames) 
Frame A:
krknkk*qklkllnfqeekrnqmkiqpyhnqmqqln*ikmtkkltlqhfqkknvlknlmn
ikqlqinilvnknmi*qqkfiqkqlniiqqqfyiqidhfqilrmsym*mhykmlkplmkw
iqlt*khiiv*vvhi*h*eilkkqntfskns*qriqkkmmqrln*ifvii*lkqnylkmq
f*lhlnhilkn*iliq*mlkn---

---ihmvnsmif*iylrlmdhhqrrnhtfsmatlwigvvlvlklsslywlinyctqiici
*qgvtmrqpi*ivsmvskakwlqntvrwysiysqscsigshwhscwmnrlwwymvvclvr
mvshltilerlnvmhqiqkimnwfnayfglilnqilvllllqev*vftldlmspdvssrk
iiyqlsldlmklkkkviksmmmvlsslfsllqiivinlvilahl*i*lkiklklql*sce
hpnippmh*pkk

Frame B:
kekikndks*ns*iskkkkgik*kfnlittrcss*ik*r*qrn*pfntfkrrmy*ki**i
*snck*tf**tki*fssrslyksn*issnsnfifk*iifkf*e*vickcitrcsnls*ng
snlhksilsfr*ctfsikkf*rsktlfqrtlnkeskrk*ckd*iksl**fn*skii*rcn
fnyt*iif*riry*fnec*ri---

---ytwsil*sfeyi*d*witirgetipfqwrlcg*g*f*f*nyhhsigl*iivpksyaf
dkg*p*dnryesflwfprrsgckiq*dgirsilrvvqlvpigirvg*ivyggtwwfvw*g
wcht*ry*kd*t*ctrskr**igsmltlv*ssikswycsffkrcrcllwt*chqtfpqgk
*sinyh*is*s*rkrlsnr**wfshhcflcskll*siw*swliykyn*r*n*nynfeavn
iriyhqcisqk

Frame C:
kkk*KMTKVETLEFPRRKKESNENSTLSQPDAAAELNKDDKETDPSTLSKEECIKKSDEY
KAIANKHFSEQKYDLAAEVYTKAIKYHPTAILYSNRSFSNFKNELYVNALQDAQTSHEMD
PTYIKAYYRLGSAHLALRNFEEAKHFFKELLTKNPKENDAKIKLNLCNNLIKAKLFEDAI
LITPESYFKELDINSMNVEES---

---THGQFYDLLNIFKINGSPSEEKPYLFNGDFVDRGSFSFEIIITLLAYKLLYPNHMHL
TRGNHETTDMNRFYGFQGEVVAKYSEMVFDLFSELFNWFPLAFVLDESFMVVHGGLFGKD
GVTLDDIRKIKRNAPDPKDNELVQCLLWSDPQSNPGIAPSSRGVGVYFGPDVTRRFLKEN
NLSTIIRSHEVKEKGYQIDDDGSLITVFSAPNYCDQSGNLGSFINITEDKIKITTLKL*t
seyttnalakk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI734 (VFI734Q) /CSM/VF/VFI7-B/VFI734Q.Seq.d/                       2591   0.0
VFF491 (VFF491Q) /CSM/VF/VFF4-D/VFF491Q.Seq.d/                       1459   0.0
SFG624 (SFG624Q) /CSM/SF/SFG6-A/SFG624Q.Seq.d/                       1441   0.0
AFO461 (AFO461Q) /CSM/AF/AFO4-C/AFO461Q.Seq.d/                       1437   0.0
AFL662 (AFL662Q) /CSM/AF/AFL6-C/AFL662Q.Seq.d/                       1431   0.0
SFD165 (SFD165Q) /CSM/SF/SFD1-C/SFD165Q.Seq.d/                       1400   0.0
CFG219 (CFG219Q) /CSM/CF/CFG2-A/CFG219Q.Seq.d/                       1390   0.0
VFE321 (VFE321Q) /CSM/VF/VFE3-A/VFE321Q.Seq.d/                       1382   0.0
SSE754 (SSE754Q) /CSM/SS/SSE7-C/SSE754Q.Seq.d/                       1362   0.0
VFK254 (VFK254Q) /CSM/VF/VFK2-C/VFK254Q.Seq.d/                       1330   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ432296) Dictyostelium discoideum cDNA clone:ddv18d09, 3' ...  1467   0.0    1
(BJ428406) Dictyostelium discoideum cDNA clone:ddv11f24, 3' ...  1459   0.0    1
(BJ400660) Dictyostelium discoideum cDNA clone:dds14o06, 3' ...  1441   0.0    1
(BJ345959) Dictyostelium discoideum cDNA clone:dda29j16, 3' ...  1431   0.0    1
(BJ346669) Dictyostelium discoideum cDNA clone:dda24k16, 3' ...  1425   0.0    1
(BJ399787) Dictyostelium discoideum cDNA clone:dds7a17, 3' e...  1396   0.0    1
(BJ430878) Dictyostelium discoideum cDNA clone:ddv9j05, 3' e...  1382   0.0    1
(BJ372537) Dictyostelium discoideum cDNA clone:ddc13e06, 3' ...  1334   0.0    2
(BJ374260) Dictyostelium discoideum cDNA clone:ddc6n06, 3' e...  1273   0.0    2
(BJ433374) Dictyostelium discoideum cDNA clone:ddv21k14, 3' ...  1269   0.0    2
dna update 2009. 1. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR859667_1(CR859667|pid:none) Pongo abelii mRNA; cDNA DKFZp459E1...   336   1e-90
A55346(A55346)phosphoprotein phosphatase (EC 3.1.3.16) PPT [vali...   336   1e-90
(P53041) RecName: Full=Serine/threonine-protein phosphatase 5;  ...   335   2e-90
BC000750_1(BC000750|pid:none) Homo sapiens protein phosphatase 5...   335   2e-90
U12203_1(U12203|pid:none) Rattus norvegicus phosphoprotein phosp...   334   4e-90
AK223222_1(AK223222|pid:none) Homo sapiens mRNA for protein phos...   334   4e-90
(Q60676) RecName: Full=Serine/threonine-protein phosphatase 5;  ...   333   7e-90
BC078786_1(BC078786|pid:none) Rattus norvegicus protein phosphat...   333   8e-90
AK297095_1(AK297095|pid:none) Homo sapiens cDNA FLJ55717 complet...   324   5e-87
S52570(S52570;PC4136)phosphoprotein phosphatase (EC 3.1.3.16) 5 ...   320   6e-86
protein update 2009. 6.21
PSORT 

 psg: 0.27  gvh: 0.21  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	 12.0 %: cytoskeletal

>> prediction for VFI734 is cyt
5' end seq. ID VFI734F
5' end seq. 
>VFI734F.Seq
AAAAGAAAAAATAAAAAATGACAAAAGTTGAAACTCTTGAATTTCCAAGAAGAAAAAAGG
AATCAAATGAAAATTCAACCTTATCACAACCAGATGCAGCAGCTGAATTAAATAAAGATG
ACAAAGAAACTGACCCTTCAACACTTTCAAAAGAAGAATGTATTAAAAAATCTGATGAAT
ATAAAGCAATTGCAAATAAACATTTTAGTGAACAAAAATATGATTTAGCAGCAGAAGTTT
ATACAAAAGCAATTAAATATCATCCAACAGCAATTTTATATTCAAATAGATCATTTTCAA
ATTTTAAGAATGAGTTATATGTAAATGCATTACAAGATGCTCAAACCTCTCATGAAATGG
ATCCAACTTACATAAAAGCATATTATCGTTTAGGTAGTGCACATTTAGCATTAAGAAATT
TTGAAGAAGCAAAACACTTTTTCAAAGAACTCTTAACAAAGAATCCAAAAGAAAATGATG
CAAAGATTAAATTAAATCTTTGTAATAATTTAATTAAAGCAAAATTATTTGAAGATGCAA
TTTTAATTACACCTGAATCATATTTTAAAGAATTAGATATTAATTCAATGAATGTTGAAG
AATCANNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID VFI734Z
3' end seq. 
>VFI734Z.Seq
NNNNNNNNNNATACACATGGTCAATTCTATGATCTTTTGAATATATTTAAGATTAATGGA
TCACCATCAGAGGAGAAACCATACCTTTTCAATGGCGACTTTGTGGATAGGGGTAGTTTT
AGTTTTGAAATTATCATCACTCTATTGGCTTATAAATTATTGTACCCAAATCATATGCAT
TTGACAAGGGGTAACCATGAGACAACCGATATGAATCGTTTCTATGGTTTCCAAGGCGAA
GTGGTTGCAAAATACAGTGAGATGGTATTCGATCTATTCTCAGAGTTGTTCAATTGGTTC
CCATTGGCATTCGTGTTGGATGAATCGTTTATGGTGGTACATGGTGGTTTGTTTGGTAAG
GATGGTGTCACACTTGACGATATTAGAAAGATTAAACGTAATGCACCAGATCCAAAAGAT
AATGAATTGGTTCAATGCTTACTTTGGTCTGATCCTCAATCAAATCCTGGTATTGCTCCT
TCTTCAAGAGGTGTAGGTGTTTACTTTGGACCTGATGTCACCAGACGTTTCCTCAAGGAA
AATAATCTATCAACTATCATTAGATCTCATGAAGTTAAAGAAAAAGGTTATCAAATCGAT
GATGATGGTTCTCTCATCACTGTTTTCTCTGCTCCAAATTATTGTGATCAATCTGGTAAT
CTTGGCTCATTTATAAATATAACTGAAGATAAAATTAAAATTACAACTTTGAAGCTGTGA
ACATCCGAATATACCACCAATGCATTAGCCAAAAAAA
Length of 3' end seq. 757
Connected seq. ID VFI734P
Connected seq. 
>VFI734P.Seq
AAAAGAAAAAATAAAAAATGACAAAAGTTGAAACTCTTGAATTTCCAAGAAGAAAAAAGG
AATCAAATGAAAATTCAACCTTATCACAACCAGATGCAGCAGCTGAATTAAATAAAGATG
ACAAAGAAACTGACCCTTCAACACTTTCAAAAGAAGAATGTATTAAAAAATCTGATGAAT
ATAAAGCAATTGCAAATAAACATTTTAGTGAACAAAAATATGATTTAGCAGCAGAAGTTT
ATACAAAAGCAATTAAATATCATCCAACAGCAATTTTATATTCAAATAGATCATTTTCAA
ATTTTAAGAATGAGTTATATGTAAATGCATTACAAGATGCTCAAACCTCTCATGAAATGG
ATCCAACTTACATAAAAGCATATTATCGTTTAGGTAGTGCACATTTAGCATTAAGAAATT
TTGAAGAAGCAAAACACTTTTTCAAAGAACTCTTAACAAAGAATCCAAAAGAAAATGATG
CAAAGATTAAATTAAATCTTTGTAATAATTTAATTAAAGCAAAATTATTTGAAGATGCAA
TTTTAATTACACCTGAATCATATTTTAAAGAATTAGATATTAATTCAATGAATGTTGAAG
AATCA----------ATACACATGGTCAATTCTATGATCTTTTGAATATATTTAAGATTA
ATGGATCACCATCAGAGGAGAAACCATACCTTTTCAATGGCGACTTTGTGGATAGGGGTA
GTTTTAGTTTTGAAATTATCATCACTCTATTGGCTTATAAATTATTGTACCCAAATCATA
TGCATTTGACAAGGGGTAACCATGAGACAACCGATATGAATCGTTTCTATGGTTTCCAAG
GCGAAGTGGTTGCAAAATACAGTGAGATGGTATTCGATCTATTCTCAGAGTTGTTCAATT
GGTTCCCATTGGCATTCGTGTTGGATGAATCGTTTATGGTGGTACATGGTGGTTTGTTTG
GTAAGGATGGTGTCACACTTGACGATATTAGAAAGATTAAACGTAATGCACCAGATCCAA
AAGATAATGAATTGGTTCAATGCTTACTTTGGTCTGATCCTCAATCAAATCCTGGTATTG
CTCCTTCTTCAAGAGGTGTAGGTGTTTACTTTGGACCTGATGTCACCAGACGTTTCCTCA
AGGAAAATAATCTATCAACTATCATTAGATCTCATGAAGTTAAAGAAAAAGGTTATCAAA
TCGATGATGATGGTTCTCTCATCACTGTTTTCTCTGCTCCAAATTATTGTGATCAATCTG
GTAATCTTGGCTCATTTATAAATATAACTGAAGATAAAATTAAAATTACAACTTTGAAGC
TGTGAACATCCGAATATACCACCAATGCATTAGCCAAAAAAA
Length of connected seq. 1352
Full length Seq ID -
Full length Seq. -
Length of full length seq. -