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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI705
Library VF
(Link to library)
Clone ID VFI705
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16488-1
Original site URL
Representative seq. ID VFI705P
(Link to Original site)
Representative DNA sequence 
>VFI705 (VFI705Q) /CSM/VF/VFI7-A/VFI705Q.Seq.d/
GTAATCAATAAAATGGCTAAAGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAA
AAACGTAAACATAAATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATC
AACTGTCACGGTTGTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATT
TGCAGTTCATGTTCAACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCC
GGTTGTCGTTTAAGACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCA
ATTTTTTTTTTAATAGAAAATAAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATAT
AATATGTATATAGAATTTTATTTTTAAAAAAAAAAXXXXXXXXXXTTCNCAATCATCAAT
TGATTCACAATCATCATTCGATTCACAATCATCATGGGGTTCACAATCATCATGGGGTTC
ACAATCATCATGGGGTTCACAATCATCATGGGCCTCACAATCATCATGGGGTTCATCAGA
TTCATCAAACTTTTTAACAGCATCTGAATCATCAGGTGAAGCATGTCCATCTTCTTCAAT
TGGTGGTAATATCGTTCAAGAAGGTGTTTGCTTCTATTATGCTGATAGATTACCATCAAT
TTATACCGTCTCTGGTGATAACATTGTTCAAAC
sequence update 2001.11.22
Translated Amino Acid sequence 
nq*ng*rtw*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchl
qfmfncycstnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikknamcrvii*
YVYRILFLKKK---

---SQSSIDSQSSFDSQSSWGSQSSWGSQSSWGSQSSWASQSSWGSSDSSNFLTASESSG
EACPSSSIGGNIVQEGVCFYYADRLPSIYTVSGDNIVQ
Translated Amino Acid sequence (All Frames) 
Frame A:
vinkmakergdllfpsiesekrkhklkrlvqapnsffmdinchgcrtittvfshaqnvvi
csscstviaqptggraritagcrlrqksd*gyrpiaptlsifflienkq*kkmlcae**y
nmyiefyf*kk---

---fxiin*ftiiirftiimgftiimgftiimgftiimgltiimgfirfiklfnsi*iir
*smsiffnww*yrsrrcllllc**itinlyrlw**hcsn

Frame B:
*sikwlknvviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktlsf
avhvqllllnqlvvvleslpvvv*dknptkvtvqshqrfqfff**kinnkkkcyvqsnni
ici*nfifkkk---

---SQSSIDSQSSFDSQSSWGSQSSWGSQSSWGSQSSWASQSSWGSSDSSNFLTASESSG
EACPSSSIGGNIVQEGVCFYYADRLPSIYTVSGDNIVQ

Frame C:
nq*ng*rtw*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrchl
qfmfncycstnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikknamcrvii*
YVYRILFLKKK---

---xnhqlihnhhsihnhhgvhnhhgvhnhhgvhnhhgphnhhgvhqihqtf*qhlnhqv
khvhllqlvvisfkkvfasimlidyhqfipslvitlfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI705 (VFI705Q) /CSM/VF/VFI7-A/VFI705Q.Seq.d/                        650   0.0
VFG624 (VFG624Q) /CSM/VF/VFG6-A/VFG624Q.Seq.d/                        642   0.0
VSI793 (VSI793Q) /CSM/VS/VSI7-D/VSI793Q.Seq.d/                        638   0.0
VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                        624   e-178
VSH184 (VSH184Q) /CSM/VS/VSH1-D/VSH184Q.Seq.d/                        618   e-176
VSB280 (VSB280Q) /CSM/VS/VSB2-D/VSB280Q.Seq.d/                        613   e-174
VSG840 (VSG840Q) /CSM/VS/VSG8-B/VSG840Q.Seq.d/                        609   e-173
VSI480 (VSI480Q) /CSM/VS/VSI4-D/VSI480Q.Seq.d/                        607   e-173
VSG503 (VSG503Q) /CSM/VS/VSG5-A/VSG503Q.Seq.d/                        607   e-173
VHA691 (VHA691Q) /CSM/VH/VHA6-D/VHA691Q.Seq.d/                        599   e-170
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   295   e-168  5
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   339   3e-89  5
CF423215|CF423215.1 NcEST3d69b03.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9U5N5 Q9U5N5 40S RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    40   7e-04  2
CF599090|CF599090.1 NcEST3d98e07.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
CA857264|CA857264.1 NcEST3a47c04.y1 Nc-1 pZ Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
CF423272|CF423272.1 NcEST3d69h07.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
CF260143|CF260143.1 NcEST3c94e11.y2 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
CF421933|CF421933.1 NcEST3d70c04.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
CF273832|CF273832.1 NcEST3d28g08.y1 Nc-LIV Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
CA857068|CA857068.1 NcEST3a43g09.y1 Nc-1 pZ Tachyzoite cDNA Library Neospora caninum cDNA 5' similar to TR:Q9ZNS3 Q9ZNS3 RIBOSOMAL PROTEIN S27. ;, mRNA sequence.    36   0.034  2
dna update 2004. 3.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082617_1(EF082617|pid:none) Picea sitchensis clone WS0299_E22 ...   124   2e-27
AY857484_1(AY857484|pid:none) Suberites domuncula S27 mRNA, comp...   123   6e-27
BT051468_1(BT051468|pid:none) Medicago truncatula clone MTYF1_F2...   122   8e-27
DQ241850_1(DQ241850|pid:none) Solanum tuberosum clone 187G01 rib...   121   2e-26
BT053528_1(BT053528|pid:none) Medicago truncatula clone MTYFP_FQ...   121   2e-26
EF146224_1(EF146224|pid:none) Populus trichocarpa clone WS0116_F...   121   2e-26
DQ673404_1(DQ673404|pid:none) Diaphorina citri putative ribosoma...   120   3e-26
EF179453_1(EF179453|pid:none) Xenopsylla cheopis clone XC-86 rib...   120   3e-26
(Q9M2F1) RecName: Full=40S ribosomal protein S27-2;  &AF083336_1...   120   5e-26
AL137898_1(AL137898|pid:none) Arabidopsis thaliana DNA chromosom...   120   5e-26
protein update 2009. 6.21
PSORT 

 psg: 0.63  gvh: 0.50  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VFI705 is mit
5' end seq. ID VFI705F
5' end seq. 
>VFI705F.Seq
GTAATCAATAAAATGGCTAAAGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAA
AAACGTAAACATAAATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATC
AACTGTCACGGTTGTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATT
TGCAGTTCATGTTCAACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCC
GGTTGTCGTTTAAGACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCA
ATTTTTTTTTTAATAGAAAATAAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATAT
AATATGTATATAGAATTTTATTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 405
3' end seq. ID VFI705Z
3' end seq. 
>VFI705Z.Seq
NNNNNNNNNNTTCNCAATCATCAATTGATTCACAATCATCATTCGATTCACAATCATCAT
GGGGTTCACAATCATCATGGGGTTCACAATCATCATGGGGTTCACAATCATCATGGGCCT
CACAATCATCATGGGGTTCATCAGATTCATCAAACTTTTTAACAGCATCTGAATCATCAG
GTGAAGCATGTCCATCTTCTTCAATTGGTGGTAATATCGTTCAAGAAGGTGTTTGCTTCT
ATTATGCTGATAGATTACCATCAATTTATACCGTCTCTGGTGATAACATTGTTCAAAC
Length of 3' end seq. 298
Connected seq. ID VFI705P
Connected seq. 
>VFI705P.Seq
GTAATCAATAAAATGGCTAAAGAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAA
AAACGTAAACATAAATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATC
AACTGTCACGGTTGTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTTGTCATT
TGCAGTTCATGTTCAACTGTTATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCC
GGTTGTCGTTTAAGACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCA
ATTTTTTTTTTAATAGAAAATAAACAATAAAAAAAAATGCTATGTGCAGAGTAATAATAT
AATATGTATATAGAATTTTATTTTTAAAAAAAAAA----------TTCNCAATCATCAAT
TGATTCACAATCATCATTCGATTCACAATCATCATGGGGTTCACAATCATCATGGGGTTC
ACAATCATCATGGGGTTCACAATCATCATGGGCCTCACAATCATCATGGGGTTCATCAGA
TTCATCAAACTTTTTAACAGCATCTGAATCATCAGGTGAAGCATGTCCATCTTCTTCAAT
TGGTGGTAATATCGTTCAAGAAGGTGTTTGCTTCTATTATGCTGATAGATTACCATCAAT
TTATACCGTCTCTGGTGATAACATTGTTCAAAC
Length of connected seq. 683
Full length Seq ID -
Full length Seq. -
Length of full length seq. -