VFI696 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFI696
Library	VF (Link to library)
Clone ID	VFI696 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10171-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFI6-D/VFI696Q.Seq.d/
Representative seq. ID	VFI696E (Link to Original site)
Representative DNA sequence	>VFI696 (VFI696Q) /CSM/VF/VFI6-D/VFI696Q.Seq.d/ AATAAATTCCAAAACAACGAAAATGAGCGAAACCACTGCAACCTCAACTACAACAACAAG AACAACAGATAAAGACAATGTAAATAATAATAATAATAATGAAAATAAAGAAGAAAAACA ACCAATTAATATTATAGTTTTAGGTATGGCCGGTAGTGGTAAAACTACTTTATTACAAAG AATTAGAGCACATTTATATGAAAATAAAATACCAGGATATATTATAAATTTAGATCCAGC TGTTAGTAAATTACCATATACACCAAATATTGATATTAGAGATACAGTGAATTATAAAGA AGTTATGAAACAATTTAATTTAGGACCAAATGGGGGTATTGTTACATCATTGAATTTATT TAGTACTAAATTCGATAAGGTATTGGAGATTGTTGAAAAGAGATCATCATCATTGGACTA CATTATATTGGATACACCAGGACAAATCGAAGTATTCACATGGAGTGCATCAGGTACTAT CATCACTGAATTGATGGCATCATCATTTCCAACTGTATTGGTATACGTTGTCGATACACC ACGTACCGTTGATCCTACTACCTTCATGTCCAATATGTTGTATGCCTGTAGTATAATGTA CAAGAGTAAGCTACCAATGGTTGTGGCATTCAATAAGATCGATATCACCAATCATCGTTT TGCAGAGGAGTGGATGTCTGATTTTGACTCTTTTCAAGACGCCCTCACCAACGATCCAAC TTATATGGGCAATTTAACAAGATCACTTTCATTGGTTTTAGAAGAATTTTATTCAACACT TCAAAGTGTTGGTGTATCAGCTGTTGATGGTTCTGGTATCGATGAATTCTTTGAAAAGAT TGGTTTGGCCGCTCAAGATTATCATAAATACTATAAGGCTGACCTTGAAAAAATTAAAAA ACAAAAATCTGATAAAGAACAAGCTGAAGCAAATAAAAATTGGGAAAAATTAAAAAGAGA TTTAGAAGAATCAAAAGGTGCAAAAGTTGAATATGATTTTAAAAAGGAAAAGAAAAGAGA AAAACAAGAAAAAACTAAAAATATTTATGATGATGAAGAGGATGATTATAGAGATGATCG TGATATGAAAGATTCAGGTGAATATGAAAGTTATGAAGATGAACAAGAAGAAGGGATTAG AAAATGAAGAAGAAAGATTAGAAGATCAACGTGCATANAATCTTTAANAGTTCAAT
sequence update	2001.11.24
Translated Amino Acid sequence	INSKTTKMSETTATSTTTTRTTDKDNVNNNNNNENKEEKQPINIIVLGMAGSGKTTLLQR IRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVNYKEVMKQFNLGPNGGIVTSLNLF STKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSASGTIITELMASSFPTVLVYVVDTP RTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITNHRFAEEWMSDFDSFQDALTNDPT YMGNLTRSLSLVLEEFYSTLQSVGVSAVDGSGIDEFFEKIGLAAQDYHKYYKADLEKIKK QKSDKEQAEANKNWEKLKRDLEESKGAKVEYDFKKEKKREKQEKTKNIYDDEEDDYRDDR DMKDSGEYESYEDEQEEGIRK*rrkirrstcixslxvq
Translated Amino Acid sequence (All Frames)	Frame A: nkfqnnenernhcnlnynnknnrrqck****krrkttnyysfrygrwnyfitk nstfikntriyykfrssc*itiytkyyryselrsyetifrtkwgycyiiefi yirgigdckeiiiiglhyigytrtnrsihmeciryyhhidgiiisncigircryt tyrsyylhvqyvvclynvqeatngcgiqdryhqssfcrgvdvflfsrrphqrsn lygqfnkitfigfrrilfntskcwciscwfwyrilkdwfgrsrlsilgpknk tki*rtsskklgkikkrfrrikrcksifkgkekrktrknkyl*rglrs yerfriklrtrrrdkmkkkdkinvhxifxss Frame B: INSKTTKMSETTATSTTTTRTTDKDNVNNNNNNENKEEKQPINIIVLGMAGSGKTTLLQR IRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVNYKEVMKQFNLGPNGGIVTSLNLF STKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSASGTIITELMASSFPTVLVYVVDTP RTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITNHRFAEEWMSDFDSFQDALTNDPT YMGNLTRSLSLVLEEFYSTLQSVGVSAVDGSGIDEFFEKIGLAAQDYHKYYKADLEKIKK QKSDKEQAEANKNWEKLKRDLEESKGAKVEYDFKKEKKREKQEKTKNIYDDEEDDYRDDR DMKDSGEYESYEDEQEEGIRKrrkirrstcixslxvq Frame C: ipkqrkakplqpqlqqqeqqiktmiiiiimkikkknnqlilfvwpvvvkllyyke lehiymkikyqdiliiqllvnyhihqilileiqiikklnnlidqmgvllhhiyl vlnsirywrllkrdhhhwttlywihqdkskyshgvhqvlsslnwhhhfqlywytlsihh vplillpscpiccmpvvctrvsyqwlwhsirsispiivlqrsgcliltlfktpsptiql iwaiqdhfhwfknfiqhfkvlvyqllmvlvsmnslkrlvwplkiiintirltlkklkn knliknklkqikigknkeiknqkvqklnmilkrkrkeknkkklkifmmmkrmiiemiv ikiqvnmkvmkmnkkkgleneeerledqraxnl*xfn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFI696 (VFI696Q) /CSM/VF/VFI6-D/VFI696Q.Seq.d/ 1524 0.0 VFJ806 (VFJ806Q) /CSM/VF/VFJ8-A/VFJ806Q.Seq.d/ 1509 0.0 SFJ447 (SFJ447Q) /CSM/SF/SFJ4-B/SFJ447Q.Seq.d/ 952 0.0 SSJ708 (SSJ708Q) /CSM/SS/SSJ7-A/SSJ708Q.Seq.d/ 42 0.019 SHB412 (SHB412Q) /CSM/SH/SHB4-A/SHB412Q.Seq.d/ 42 0.019 SFI714 (SFI714Q) /CSM/SF/SFI7-A/SFI714Q.Seq.d/ 42 0.019 AHL287 (AHL287Q) /CSM/AH/AHL2-D/AHL287Q.Seq.d/ 42 0.019 AFO391 (AFO391Q) /CSM/AF/AFO3-D/AFO391Q.Seq.d/ 42 0.019 SSK286 (SSK286Q) /CSM/SS/SSK2-D/SSK286Q.Seq.d/ 40 0.076 SHL462 (SHL462Q) /CSM/SH/SHL4-C/SHL462Q.Seq.d/ 40 0.076
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ389618) Dictyostelium discoideum cDNA clone:dds19n12, 5' ... 926 0.0 2 (BJ414699) Dictyostelium discoideum cDNA clone:ddv20l02, 5' ... 924 0.0 2 (BJ432528) Dictyostelium discoideum cDNA clone:ddv18o24, 3' ... 860 0.0 3 (BJ414380) Dictyostelium discoideum cDNA clone:ddv18o24, 5' ... 827 0.0 2 (BJ432886) Dictyostelium discoideum cDNA clone:ddv20l02, 3' ... 680 0.0 2 (BJ401802) Dictyostelium discoideum cDNA clone:dds19n12, 3' ... 559 0.0 4 (AX489077) Sequence 6377 from Patent WO02053728. 92 6e-28 5 (AR545823) Sequence 954 from patent US 6747137. 84 2e-25 5 (AM641887) Entamoeba dispar GSS, clone dispar90b07.q1k. 76 4e-18 3 (CZ535540) SRAA-aac97h07.b1 Strongyloides ratti whole genome... 68 2e-14 4
dna update	2009. 1. 7
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AK073391_1(AK073391\|pid:none) Oryza sativa Japonica Group cDNA c... 347 4e-94 BC106338_1(BC106338\|pid:none) Xenopus laevis hypothetical protei... 343 7e-93 AY088472_1(AY088472\|pid:none) Arabidopsis thaliana clone 6952 mR... 343 7e-93 AF419563_1(AF419563\|pid:none) Arabidopsis thaliana AT4g21800/F17... 343 9e-93 (Q9HCN4) RecName: Full=GPN-loop GTPase 1; AltName: Full=XPA-bind... 342 2e-92 AJ010842_1(AJ010842\|pid:none) Homo sapiens mRNA for putative ATP... 342 2e-92 BC135391_1(BC135391\|pid:none) Xenopus tropicalis hypothetical pr... 342 2e-92 AB170277_1(AB170277\|pid:none) Macaca fascicularis brain cDNA clo... 341 3e-92 EU962702_1(EU962702\|pid:none) Zea mays clone 244855 XPA-binding ... 339 1e-91 BC161949_1(BC161949\|pid:none) Rattus norvegicus similar to XPA b... 339 1e-91
protein update	2009. 7.11
PSORT	psg: 0.85 gvh: 0.38 alm: 0.36 top: 0.40 tms: 0.00 mit: 0.41 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 28.0 %: mitochondrial 28.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for VFI696 is cyt
5' end seq. ID	VFI696F
5' end seq.	>VFI696F.Seq AATAAATTCCAAAACAACGAAAATGAGCGAAACCACTGCAACCTCAACTACAACAACAAG AACAACAGATAAAGACAATGTAAATAATAATAATAATAATGAAAATAAAGAAGAAAAACA ACCAATTAATATTATAGTTTTAGGTATGGCCGGTAGTGGTAAAACTACTTTATTACAAAG AATTAGAGCACATTTATATGAAAATAAAATACCAGGATATATTATAAATTTAGATCCAGC TGTTAGTAAATTACCATATACACCAAATATTGATATTAGAGATACAGTGAATTATAAAGA AGTTATGAAACAATTTAATTTAGGACCAAATGGGGGTATTGTTACATCATTGAATTTATT TAGTACTAAATTCGATAAGGTATTGGAGATTGTTGAAAAGAGATCATCATCATTGGACTA CATTATATTGGATACACCAGGACAAATCGAAGTATTCACATGGAGTGCATCAGGTACTAT CATCACTGAATTGATGGCATCATCATTTCCAACTGTATTGGTATACGTTGTCGATACACC ACGTACCGNNNNNNNNNN
Length of 5' end seq.	558
3' end seq. ID	VFI696Z
3' end seq.	>VFI696Z.Seq NNNNNNNNNNATTCACATGGAGTGCATCAGGTACTATCATCACTGAATTGATGGCATCAT CATTTCCAACTGTATTGGTATACGTTGTCGATACACCACGTACCGTTGATCCTACTACCT TCATGTCCAATATGTTGTATGCCTGTAGTATAATGTACAAGAGTAAGCTACCAATGGTTG TGGCATTCAATAAGATCGATATCACCAATCATCGTTTTGCAGAGGAGTGGATGTCTGATT TTGACTCTTTTCAAGACGCCCTCACCAACGATCCAACTTATATGGGCAATTTAACAAGAT CACTTTCATTGGTTTTAGAAGAATTTTATTCAACACTTCAAAGTGTTGGTGTATCAGCTG TTGATGGTTCTGGTATCGATGAATTCTTTGAAAAGATTGGTTTGGCCGCTCAAGATTATC ATAAATACTATAAGGCTGACCTTGAAAAAATTAAAAAACAAAAATCTGATAAAGAACAAG CTGAAGCAAATAAAAATTGGGAAAAATTAAAAAGAGATTTAGAAGAATCAAAAGGTGCAA AAGTTGAATATGATTTTAAAAAGGAAAAGAAAAGAGAAAAACAAGAAAAAACTAAAAATA TTTATGATGATGAAGAGGATGATTATAGAGATGATCGTGATATGAAAGATTCAGGTGAAT ATGAAAGTTATGAAGATGAACAAGAAGAAGGGATTAGAAAATGAAGAAGAAAGATTAGAA GATCAACGTGCATANAATCTTTAANAGTTCAAT
Length of 3' end seq.	753
Connected seq. ID	VFI696P
Connected seq.	>VFI696P.Seq AATAAATTCCAAAACAACGAAAATGAGCGAAACCACTGCAACCTCAACTACAACAACAAG AACAACAGATAAAGACAATGTAAATAATAATAATAATAATGAAAATAAAGAAGAAAAACA ACCAATTAATATTATAGTTTTAGGTATGGCCGGTAGTGGTAAAACTACTTTATTACAAAG AATTAGAGCACATTTATATGAAAATAAAATACCAGGATATATTATAAATTTAGATCCAGC TGTTAGTAAATTACCATATACACCAAATATTGATATTAGAGATACAGTGAATTATAAAGA AGTTATGAAACAATTTAATTTAGGACCAAATGGGGGTATTGTTACATCATTGAATTTATT TAGTACTAAATTCGATAAGGTATTGGAGATTGTTGAAAAGAGATCATCATCATTGGACTA CATTATATTGGATACACCAGGACAAATCGAAGTATTCACATGGAGTGCATCAGGTACTAT CATCACTGAATTGATGGCATCATCATTTCCAACTGTATTGGTATACGTTGTCGATACACC ACGTACCG----------ATTCACATGGAGTGCATCAGGTACTATCATCACTGAATTGAT GGCATCATCATTTCCAACTGTATTGGTATACGTTGTCGATACACCACGTACCGTTGATCC TACTACCTTCATGTCCAATATGTTGTATGCCTGTAGTATAATGTACAAGAGTAAGCTACC AATGGTTGTGGCATTCAATAAGATCGATATCACCAATCATCGTTTTGCAGAGGAGTGGAT GTCTGATTTTGACTCTTTTCAAGACGCCCTCACCAACGATCCAACTTATATGGGCAATTT AACAAGATCACTTTCATTGGTTTTAGAAGAATTTTATTCAACACTTCAAAGTGTTGGTGT ATCAGCTGTTGATGGTTCTGGTATCGATGAATTCTTTGAAAAGATTGGTTTGGCCGCTCA AGATTATCATAAATACTATAAGGCTGACCTTGAAAAAATTAAAAAACAAAAATCTGATAA AGAACAAGCTGAAGCAAATAAAAATTGGGAAAAATTAAAAAGAGATTTAGAAGAATCAAA AGGTGCAAAAGTTGAATATGATTTTAAAAAGGAAAAGAAAAGAGAAAAACAAGAAAAAAC TAAAAATATTTATGATGATGAAGAGGATGATTATAGAGATGATCGTGATATGAAAGATTC AGGTGAATATGAAAGTTATGAAGATGAACAAGAAGAAGGGATTAGAAAATGAAGAAGAAA GATTAGAAGATCAACGTGCATANAATCTTTAANAGTTCAAT
Length of connected seq.	1291
Full length Seq ID	VFI696E
Full length Seq.	>VFI696E.Seq AATAAATTCCAAAACAACGAAAATGAGCGAAACCACTGCAACCTCAACTACAACAACAAG AACAACAGATAAAGACAATGTAAATAATAATAATAATAATGAAAATAAAGAAGAAAAACA ACCAATTAATATTATAGTTTTAGGTATGGCCGGTAGTGGTAAAACTACTTTATTACAAAG AATTAGAGCACATTTATATGAAAATAAAATACCAGGATATATTATAAATTTAGATCCAGC TGTTAGTAAATTACCATATACACCAAATATTGATATTAGAGATACAGTGAATTATAAAGA AGTTATGAAACAATTTAATTTAGGACCAAATGGGGGTATTGTTACATCATTGAATTTATT TAGTACTAAATTCGATAAGGTATTGGAGATTGTTGAAAAGAGATCATCATCATTGGACTA CATTATATTGGATACACCAGGACAAATCGAAGTATTCACATGGAGTGCATCAGGTACTAT CATCACTGAATTGATGGCATCATCATTTCCAACTGTATTGGTATACGTTGTCGATACACC ACGTACCGTTGATCCTACTACCTTCATGTCCAATATGTTGTATGCCTGTAGTATAATGTA CAAGAGTAAGCTACCAATGGTTGTGGCATTCAATAAGATCGATATCACCAATCATCGTTT TGCAGAGGAGTGGATGTCTGATTTTGACTCTTTTCAAGACGCCCTCACCAACGATCCAAC TTATATGGGCAATTTAACAAGATCACTTTCATTGGTTTTAGAAGAATTTTATTCAACACT TCAAAGTGTTGGTGTATCAGCTGTTGATGGTTCTGGTATCGATGAATTCTTTGAAAAGAT TGGTTTGGCCGCTCAAGATTATCATAAATACTATAAGGCTGACCTTGAAAAAATTAAAAA ACAAAAATCTGATAAAGAACAAGCTGAAGCAAATAAAAATTGGGAAAAATTAAAAAGAGA TTTAGAAGAATCAAAAGGTGCAAAAGTTGAATATGATTTTAAAAAGGAAAAGAAAAGAGA AAAACAAGAAAAAACTAAAAATATTTATGATGATGAAGAGGATGATTATAGAGATGATCG TGATATGAAAGATTCAGGTGAATATGAAAGTTATGAAGATGAACAAGAAGAAGGGATTAG AAAATGAAGAAGAAAGATTAGAAGATCAACGTGCATANAATCTTTAANAGTTCAAT
Length of full length seq.	1196

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas