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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM694
Library AF
(Link to library)
Clone ID AFM694
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM694P
(Link to Original site)
Representative DNA sequence 
>AFM694 (AFM694Q) /CSM/AF/AFM6-D/AFM694Q.Seq.d/
AATTTATTTATTTATTCAAATATATATTATATTAAATAAAATGTTTGCCAGATTAGCCAG
AGCTAACTACTTAAAGAATTCAGGTAGATACTTCTCTACTGAGCCAACCTTAAAAGAAAG
ATTAGTTCAAATCATCCCAGGTAAAATTGAACAAGTTAAACAATTAAAAACTGAACATGG
TGACAAAATCATTGGTACCTGTACTGTTGCACAAGCTTATGGTGGTATGAGATCAGTTAA
ATCATTAGTTACTGAAACATCATCATTAGATCCAGAAGAAGGCATTAGATTCCGTGGTTT
AACAATCCCAGAATGTCAAGAGAAATTACCAAAAGCTCCAGGTGGTGCTGAACCATTACC
AGAAGGTATTTTATGGTTACTTTTAACTGGTGAAGTTCCAACTGAATCACAAGTTAAAAC
CTTATCAAAAGATTTAGCTAAACGTGCTGGTTTACCAAAACACGTCACCTCAATGATTAA
AGCATTCCCAGAGCAAATGCATCCAATGTCACAATTGGCCGCTGCTATTTTAGCACTCCA
AGGTGAAAGCAAATTCGTCAAAGCCTACAATGATGGTGTCAAAAAAXXXXXXXXXXTNTT
AAACNTTTNCCCCAANATCCNTTATTCAAATTAGTCAGCCNAATNTACGAAGTTGTTCCA
NATATTTTAACTAAACNCGGNAAAACCAANAACCCANANCCNAANGNTGATGCNCNCNCT
GGNTGTTTATTACAANACTATGGCTTAAAANAACANAACTTNTACNCTGTTTTANTCGGN
GNTTCNANAGCCNTTGGNGNTTTATCANCNTTAGNTTGGGNTCGGATCTTAGGNCNCCCN
ANCGAAAGACCNAAANCNGNCCCCCCTGAATGGATTTCNTCNTACGNAAACCCNGGCCNA
NCNAAAAAATNAATTTAAGNAATAAAATCNAAAAAAAAAAAAAAATAGATATCGACAAGT
AAAAAATATTTTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
IYLFIQIYIILNKMFARLARANYLKNSGRYFSTEPTLKERLVQIIPGKIEQVKQLKTEHG
DKIIGTCTVAQAYGGMRSVKSLVTETSSLDPEEGIRFRGLTIPECQEKLPKAPGGAEPLP
EGILWLLLTGEVPTESQVKTLSKDLAKRAGLPKHVTSMIKAFPEQMHPMSQLAAAILALQ
GESKFVKAYNDGVKK---

---XKXXPQXPLFKLVSXXYEVVPXILTKXGKTXNPXPXXDAXXGCLLQXYGLKXXNXYX
VLXGXSXAXGXLSXLXWXRILGXPXERPKXXPPEWISSYXNPGXXKKXI*xikskkkkk*
istskkyf
Translated Amino Acid sequence (All Frames) 
Frame A:
nlfiysniyyik*nvcqisqs*llkefr*illy*anlkrkissnhpr*n*ts*tikn*tw
*qnhwylycctslwwyeis*iisy*niiirsrrrh*ipwfnnprmsreitkssrwc*tit
rryfmvtfnw*ssn*its*nlikrfs*tcwftktrhlnd*sipranasnvtigrcyfstp
r*kqirqslq*wcqk---

---x*tfxpxsxiqisqpnxrscsxyfn*trxnqxpxxxx*cxxwxfitxlwlkxtxlxx
cfxrxfxsxwxfixxxlgsdlrxpxrktxxxpp*mdfxxrkpxpxxkxnlxnkixkkkki
didk*kif

Frame B:
IYLFIQIYIILNKMFARLARANYLKNSGRYFSTEPTLKERLVQIIPGKIEQVKQLKTEHG
DKIIGTCTVAQAYGGMRSVKSLVTETSSLDPEEGIRFRGLTIPECQEKLPKAPGGAEPLP
EGILWLLLTGEVPTESQVKTLSKDLAKRAGLPKHVTSMIKAFPEQMHPMSQLAAAILALQ
GESKFVKAYNDGVKK---

---XKXXPQXPLFKLVSXXYEVVPXILTKXGKTXNPXPXXDAXXGCLLQXYGLKXXNXYX
VLXGXSXAXGXLSXLXWXRILGXPXERPKXXPPEWISSYXNPGXXKKXI*xikskkkkk*
istskkyf

Frame C:
fiylfkyily*ikclpd*peltt*riqvdtsllsqp*kkd*fkssqvklnklnn*klnmv
tkslvpvllhklmvv*dqlnh*llkhhh*iqkkaldsvv*qsqnvkrnyqklqvvlnhyq
kvfygyf*lvkfqlnhklkpyqki*lnvlvyqntspq*lkhsqskciqchnwpllf*hsk
vkansskptmmvsk---

---lnxxpxixysn*saxxtklfxif*lnxxkpxtxxxxxmxxlxvyyxtma*xnxtxtl
fxsxxxxplxxyxx*xgxgs*xxxxkdxxxxplngfxxtxtxaxxknxfkx*nxkkkknr
yrqvknif
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN189 (VFN189Q) /CSM/VF/VFN1-D/VFN189Q.Seq.d/                       1162   0.0
VFM621 (VFM621Q) /CSM/VF/VFM6-A/VFM621Q.Seq.d/                       1162   0.0
VFM247 (VFM247Q) /CSM/VF/VFM2-B/VFM247Q.Seq.d/                       1162   0.0
VFK833 (VFK833Q) /CSM/VF/VFK8-B/VFK833Q.Seq.d/                       1162   0.0
VFK780 (VFK780Q) /CSM/VF/VFK7-D/VFK780Q.Seq.d/                       1162   0.0
VFK207 (VFK207Q) /CSM/VF/VFK2-A/VFK207Q.Seq.d/                       1162   0.0
VFK145 (VFK145Q) /CSM/VF/VFK1-B/VFK145Q.Seq.d/                       1162   0.0
VFI124 (VFI124Q) /CSM/VF/VFI1-A/VFI124Q.Seq.d/                       1162   0.0
VFI101 (VFI101Q) /CSM/VF/VFI1-A/VFI101Q.Seq.d/                       1162   0.0
VFH315 (VFH315Q) /CSM/VF/VFH3-A/VFH315Q.Seq.d/                       1162   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061897) Dictyostelium discoideum slug cDNA, clone SLG531.     1094   0.0    1
(C23821) Dictyostelium discoideum gamete cDNA, clone FCL-AB18.   1094   0.0    1
(BJ417770) Dictyostelium discoideum cDNA clone:ddv28p17, 5' ...  1094   0.0    1
(BJ416910) Dictyostelium discoideum cDNA clone:ddv27a23, 5' ...  1094   0.0    1
(BJ416658) Dictyostelium discoideum cDNA clone:ddv26i06, 5' ...  1094   0.0    1
(BJ416529) Dictyostelium discoideum cDNA clone:ddv26p14, 5' ...  1094   0.0    1
(BJ416302) Dictyostelium discoideum cDNA clone:ddv25o18, 5' ...  1094   0.0    1
(BJ416243) Dictyostelium discoideum cDNA clone:ddv25m12, 5' ...  1094   0.0    1
(BJ415953) Dictyostelium discoideum cDNA clone:ddv24e11, 5' ...  1094   0.0    1
(BJ415558) Dictyostelium discoideum cDNA clone:ddv22p19, 5' ...  1094   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553V1) RecName: Full=Citrate synthase, mitochondrial;         ...   361   2e-98
AC116305_8(AC116305|pid:none) Dictyostelium discoideum chromosom...   360   5e-98
FM992695_315(FM992695|pid:none) Candida dubliniensis CD36 chromo...   208   2e-52
(P79024) RecName: Full=Citrate synthase, mitochondrial;         ...   207   5e-52
CP000502_263(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...   205   2e-51
AY144810_1(AY144810|pid:none) Saccharomyces bayanus clone Contig...   204   3e-51
(P00890) RecName: Full=Citrate synthase, mitochondrial;         ...   203   6e-51
AF193854_1(AF193854|pid:none) Saccharomyces kluyveri putative ci...   202   1e-50
CR382131_112(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   202   1e-50
AM989984_29(AM989984|pid:none) Zygosaccharomyces rouxii strain C...   202   1e-50
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM694 is

5' end seq. ID AFM694F
5' end seq. 
>AFM694F.Seq
AATTTATTTATTTATTCAAATATATATTATATTAAATAAAATGTTTGCCAGATTAGCCAG
AGCTAACTACTTAAAGAATTCAGGTAGATACTTCTCTACTGAGCCAACCTTAAAAGAAAG
ATTAGTTCAAATCATCCCAGGTAAAATTGAACAAGTTAAACAATTAAAAACTGAACATGG
TGACAAAATCATTGGTACCTGTACTGTTGCACAAGCTTATGGTGGTATGAGATCAGTTAA
ATCATTAGTTACTGAAACATCATCATTAGATCCAGAAGAAGGCATTAGATTCCGTGGTTT
AACAATCCCAGAATGTCAAGAGAAATTACCAAAAGCTCCAGGTGGTGCTGAACCATTACC
AGAAGGTATTTTATGGTTACTTTTAACTGGTGAAGTTCCAACTGAATCACAAGTTAAAAC
CTTATCAAAAGATTTAGCTAAACGTGCTGGTTTACCAAAACACGTCACCTCAATGATTAA
AGCATTCCCAGAGCAAATGCATCCAATGTCACAATTGGCCGCTGCTATTTTAGCACTCCA
AGGTGAAAGCAAATTCGTCAAAGCCTACAATGATGGTGTCAAAAAAXXXXXXXXXX
Length of 5' end seq. 596
3' end seq. ID AFM694Z
3' end seq. 
>AFM694Z.Seq
XXXXXXXXXXTNTTAAACNTTTNCCCCAANATCCNTTATTCAAATTAGTCAGCCNAATNT
ACGAAGTTGTTCCANATATTTTAACTAAACNCGGNAAAACCAANAACCCANANCCNAANG
NTGATGCNCNCNCTGGNTGTTTATTACAANACTATGGCTTAAAANAACANAACTTNTACN
CTGTTTTANTCGGNGNTTCNANAGCCNTTGGNGNTTTATCANCNTTAGNTTGGGNTCGGA
TCTTAGGNCNCCCNANCGAAAGACCNAAANCNGNCCCCCCTGAATGGATTTCNTCNTACG
NAAACCCNGGCCNANCNAAAAAATNAATTTAAGNAATAAAATCNAAAAAAAAAAAAAAAT
AGATATCGACAAGTAAAAAATATTTTT
Length of 3' end seq. 387
Connected seq. ID AFM694P
Connected seq. 
>AFM694P.Seq
AATTTATTTATTTATTCAAATATATATTATATTAAATAAAATGTTTGCCAGATTAGCCAG
AGCTAACTACTTAAAGAATTCAGGTAGATACTTCTCTACTGAGCCAACCTTAAAAGAAAG
ATTAGTTCAAATCATCCCAGGTAAAATTGAACAAGTTAAACAATTAAAAACTGAACATGG
TGACAAAATCATTGGTACCTGTACTGTTGCACAAGCTTATGGTGGTATGAGATCAGTTAA
ATCATTAGTTACTGAAACATCATCATTAGATCCAGAAGAAGGCATTAGATTCCGTGGTTT
AACAATCCCAGAATGTCAAGAGAAATTACCAAAAGCTCCAGGTGGTGCTGAACCATTACC
AGAAGGTATTTTATGGTTACTTTTAACTGGTGAAGTTCCAACTGAATCACAAGTTAAAAC
CTTATCAAAAGATTTAGCTAAACGTGCTGGTTTACCAAAACACGTCACCTCAATGATTAA
AGCATTCCCAGAGCAAATGCATCCAATGTCACAATTGGCCGCTGCTATTTTAGCACTCCA
AGGTGAAAGCAAATTCGTCAAAGCCTACAATGATGGTGTCAAAAAA----------TNTT
AAACNTTTNCCCCAANATCCNTTATTCAAATTAGTCAGCCNAATNTACGAAGTTGTTCCA
NATATTTTAACTAAACNCGGNAAAACCAANAACCCANANCCNAANGNTGATGCNCNCNCT
GGNTGTTTATTACAANACTATGGCTTAAAANAACANAACTTNTACNCTGTTTTANTCGGN
GNTTCNANAGCCNTTGGNGNTTTATCANCNTTAGNTTGGGNTCGGATCTTAGGNCNCCCN
ANCGAAAGACCNAAANCNGNCCCCCCTGAATGGATTTCNTCNTACGNAAACCCNGGCCNA
NCNAAAAAATNAATTTAAGNAATAAAATCNAAAAAAAAAAAAAAATAGATATCGACAAGT
AAAAAATATTTTT
Length of connected seq. 963
Full length Seq ID -
Full length Seq. -
Length of full length seq. -