VFI685
Library VF
(Link to library)
Clone ID VFI685
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFI685 (VFI685Q) /CSM/VF/VFI6-D/VFI685Q.Seq.d/
XXXXXXXXXXCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGNNGAATTAACCCCAT
CTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCAGTAGGTCGTTTCNCCGTCA
NAGATATGAGACAAACCGTCGCCGTCGGTGTCATCNAATCNACCGTCNAGAAAGCCCCAG
GTAAAGCCG
sequence update 2001.11.22
Translated Amino Acid sequence
---AVVLKNGDAAMXELTPSRPMCVESFTEYPPVGRFXVXDMRQTVAVGVIXSTVXKAPG
KA


Translated Amino Acid sequence (All Frames)
Frame A:
---AVVLKNGDAAMXELTPSRPMCVESFTEYPPVGRFXVXDMRQTVAVGVIXSTVXKAPG
KA


Frame B:
---pss*rmvmplwxn*phlvqcvlnpslnthq*vvspsxi*dkpspsvssnxpsrkpqv
kp


Frame C:
---rrlkew*crygxinpissnvc*ilh*iptsrsfxrxryetnrrrrchxixrxespr*
s


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI685 (VFI685Q) /CSM/VF/VFI6-D/VFI685Q.Seq.d/ 313 5e-85
VSI414 (VSI414Q) /CSM/VS/VSI4-A/VSI414Q.Seq.d/ 305 1e-82
VSH823 (VSH823Q) /CSM/VS/VSH8-A/VSH823Q.Seq.d/ 305 1e-82
VSG141 (VSG141Q) /CSM/VS/VSG1-B/VSG141Q.Seq.d/ 305 1e-82
VSF761 (VSF761Q) /CSM/VS/VSF7-C/VSF761Q.Seq.d/ 305 1e-82
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 305 1e-82
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/ 305 1e-82
VSD582 (VSD582Q) /CSM/VS/VSD5-D/VSD582Q.Seq.d/ 305 1e-82
VSD566 (VSD566Q) /CSM/VS/VSD5-C/VSD566Q.Seq.d/ 305 1e-82
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/ 305 1e-82

own update 2004. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ432495) Dictyostelium discoideum cDNA clone:ddv18i22, 3' ... 313 1e-81 1
(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 305 3e-79 1
(AU285051) Dictyostelium discoideum gamete cDNA clone:FCL-AC... 305 3e-79 1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 305 3e-79 1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 305 3e-79 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 305 3e-79 1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2... 305 3e-79 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 305 3e-79 1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2... 305 3e-79 1
(AU271940) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 305 3e-79 1
dna update 2009. 1. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 107 2e-22
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 107 2e-22
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 107 2e-22
FJ539138_1(FJ539138|pid:none) Ignatius tetrasporus strain UTEX B... 83 3e-15
I54251(I54251) translation elongation factor eEF-1 alpha - human... 79 4e-14
DQ353797_1(DQ353797|pid:none) Ictalurus punctatus isolate C94SB1... 79 5e-14
AB199910_1(AB199910|pid:none) Hyla japonica ef 1a mRNA for elong... 79 5e-14
AF398148_1(AF398148|pid:none) Brassica rapa subsp. pekinensis tr... 79 6e-14
AB326305_1(AB326305|pid:none) Solea senegalensis SseEF1A4 mRNA f... 78 1e-13
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom... 78 1e-13
protein update 2009. 6.21
PSORT

psg: 0.78 gvh: 0.39 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFI685 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFI685Z
3' end seq.
>VFI685Z.Seq
NNNNNNNNNNCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGNNGAATTAACCCCAT
CTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCAGTAGGTCGTTTCNCCGTCA
NAGATATGAGACAAACCGTCGCCGTCGGTGTCATCNAATCNACCGTCNAGAAAGCCCCAG
GTAAAGCCG
Length of 3' end seq. 189
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -