AFM692
Library AF
(Link to library)
Clone ID AFM692
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM692 (AFM692Q) /CSM/AF/AFM6-D/AFM692Q.Seq.d/
XXXXXXXXXXATGGCAAAACAGTTGGGGTTTAACCACTCGTACCATTGGTGTCATGGTTA
TGGTCCATGGTGATGACAAAGGTTTGGTTCTCCCACCACGTATCTCCCCAATTCAAGCTG
TCGTCATTCCACTCCACTTTAAGGATTCCGATACCACCGCCGTAGATTCAAAGGCTAAAG
AAATCGCTGATCAATTAAAGGCTGCCGGTATTCGTGTCAATTTAGATAATCGTCCAAACT
ACAATCCAGGTCGTAAATACAATCATTGGGAATTGAAAGGTGTTCCAATTCGTATTGAAA
TCGGTCCAAAAGATGTTGCCTCTGGTACTGTCATCTGTTGTCGTAGAGATACCGCCGAGA
AATCTAAAGTTGAAATCTCAAACATTGTCACTGGTGTCAAGGAATTACTCGACAACATTC
AATCAAATCTCTTTGATCGTGCTGTTAAACAAAGAAATGATCATATCGTCACCATCAATC
AATGGAATGAGTTTGTTCCAGCTTTGGATAATAAAAACCTTGTTTTAGCACCATGGTGCG
AAAAAGTCTCTTGTGAAGATTCAATCAAAAAGAAGAGTTCTGAAGAATCTAAAAATAAAG
CTGAAGAAGAAAAAGGTTTCTGTTTAACTGGTGCCGCCAAATCATTATGTATTCCATTAC
AAAATCAAGAACATGTTAAACTTCCAGAAATTAAAGATGATACTAAATGTTTCTGTTGTC
AAGAAAAAGCAACAAAATA
sequence update 2009. 4. 3
Translated Amino Acid sequence
---WQNSWGLTTRTIGVMVMVHGDDKGLVLPPRISPIQAVVIPLHFKDSDTTAVDSKAKE
IADQLKAAGIRVNLDNRPNYNPGRKYNHWELKGVPIRIEIGPKDVASGTVICCRRDTAEK
SKVEISNIVTGVKELLDNIQSNLFDRAVKQRNDHIVTINQWNEFVPALDNKNLVLAPWCE
KVSCEDSIKKKSSEESKNKAEEEKGFCLTGAAKSLCIPLQNQEHVKLPEIKDDTKCFCCQ
EKATK


Translated Amino Acid sequence (All Frames)
Frame A:
---WQNSWGLTTRTIGVMVMVHGDDKGLVLPPRISPIQAVVIPLHFKDSDTTAVDSKAKE
IADQLKAAGIRVNLDNRPNYNPGRKYNHWELKGVPIRIEIGPKDVASGTVICCRRDTAEK
SKVEISNIVTGVKELLDNIQSNLFDRAVKQRNDHIVTINQWNEFVPALDNKNLVLAPWCE
KVSCEDSIKKKSSEESKNKAEEEKGFCLTGAAKSLCIPLQNQEHVKLPEIKDDTKCFCCQ
EKATK


Frame B:
---gktvgv*plvplvswlwsmvmtkvwfshhvspqfklssfhstlripippp*iqrlkk
slin*rlpvfvsi*iivqttiqvvntiign*kvfqfvlksvqkmlplvlssvvveipprn
lklksqtlslvsrnysttfnqislivllnkemiisspsingmslfqlwiiktlf*hhgak
kslvkiqskrrvlknlkiklkkkkvsv*lvppnhyvfhykiknmlnfqklkmilnvsvvk
kkqqn


Frame C:
---akqlgfnhsyhwchgygpw**qrfgspttylpnsscrhstpl*gfryhrrrfkg*rn
r*sikgcryscqfr*ssklqsrs*iqslgiercsnsy*nrskrcclwychlls*ryrrei
*s*nlkhchwcqgitrqhsiksl*scc*tkk*syrhhqsme*vcssfg**kpcfstmvrk
sll*rfnqkeef*ri*k*s*rrkrflfnwcrqiimysitksrtc*tsrn*r*y*mfllsr
ksnki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM692 (AFM692Q) /CSM/AF/AFM6-D/AFM692Q.Seq.d/ 1445 0.0
FC-AV16 (FC-AV16Q) /CSM/FC/FC-AV/FC-AV16Q.Seq.d/ 1437 0.0
AFI107 (AFI107Q) /CSM/AF/AFI1-A/AFI107Q.Seq.d/ 1425 0.0
CHD276 (CHD276Q) /CSM/CH/CHD2-D/CHD276Q.Seq.d/ 1396 0.0
VFD549 (VFD549Q) /CSM/VF/VFD5-C/VFD549Q.Seq.d/ 1243 0.0
AFJ674 (AFJ674Q) /CSM/AF/AFJ6-D/AFJ674Q.Seq.d/ 1055 0.0
SLI459 (SLI459Q) /CSM/SL/SLI4-C/SLI459Q.Seq.d/ 969 0.0
VFE663 (VFE663Q) /CSM/VF/VFE6-C/VFE663Q.Seq.d/ 787 0.0
SLJ388 (SLJ388Q) /CSM/SL/SLJ3-D/SLJ388Q.Seq.d/ 414 e-115
VFH543 (VFH543Q) /CSM/VF/VFH5-B/VFH543Q.Seq.d/ 36 0.73

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347344) Dictyostelium discoideum cDNA clone:dda26g24, 3' ... 1102 0.0 1
(C24346) Dictyostelium discoideum gamete cDNA, clone FC-AV16. 1094 0.0 1
(BJ343779) Dictyostelium discoideum cDNA clone:dda17m01, 3' ... 1094 0.0 1
(BJ376507) Dictyostelium discoideum cDNA clone:ddc28g20, 3' ... 1074 0.0 3
(BJ430725) Dictyostelium discoideum cDNA clone:ddv8a13, 3' e... 900 0.0 2
(BJ344868) Dictyostelium discoideum cDNA clone:dda20c20, 3' ... 971 0.0 3
(AU053360) Dictyostelium discoideum slug cDNA, clone SLI459. 626 0.0 2
(BJ428076) Dictyostelium discoideum cDNA clone:ddv10m16, 3' ... 472 0.0 4
(AU053678) Dictyostelium discoideum slug cDNA, clone SLJ388. 246 7e-75 2
(DB997675) Quercus mongolica subsp. crispula mRNA, clone: Qm... 48 7e-11 3
dna update 2009. 4.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008218_798(AP008218|pid:none) Oryza sativa (japonica cultivar-... 225 1e-57
AK069541_1(AK069541|pid:none) Oryza sativa Japonica Group cDNA c... 225 1e-57
EU267987_1(EU267987|pid:none) Oryza sativa Japonica Group clone ... 225 1e-57
BT038646_1(BT038646|pid:none) Zea mays full-length cDNA clone ZM... 223 3e-57
CP000586_244(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 218 1e-55
BX538353_4(BX538353|pid:none) Cryptosporidium parvum chromosome ... 195 1e-48
(O60155) RecName: Full=Putative prolyl-tRNA synthetase C19C7.06;... 194 2e-48
AC137702_22(AC137702|pid:none) Medicago truncatula clone mth2-7k... 194 2e-48
AY568070_1(AY568070|pid:none) Naegleria gruberi strain NEG-M pro... 193 4e-48
AP006852_338(AP006852|pid:none) Candida albicans genomic DNA, ch... 192 1e-47
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM692 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM692Z
3' end seq.
>AFM692Z.Seq
XXXXXXXXXXATGGCAAAACAGTTGGGGTTTAACCACTCGTACCATTGGTGTCATGGTTA
TGGTCCATGGTGATGACAAAGGTTTGGTTCTCCCACCACGTATCTCCCCAATTCAAGCTG
TCGTCATTCCACTCCACTTTAAGGATTCCGATACCACCGCCGTAGATTCAAAGGCTAAAG
AAATCGCTGATCAATTAAAGGCTGCCGGTATTCGTGTCAATTTAGATAATCGTCCAAACT
ACAATCCAGGTCGTAAATACAATCATTGGGAATTGAAAGGTGTTCCAATTCGTATTGAAA
TCGGTCCAAAAGATGTTGCCTCTGGTACTGTCATCTGTTGTCGTAGAGATACCGCCGAGA
AATCTAAAGTTGAAATCTCAAACATTGTCACTGGTGTCAAGGAATTACTCGACAACATTC
AATCAAATCTCTTTGATCGTGCTGTTAAACAAAGAAATGATCATATCGTCACCATCAATC
AATGGAATGAGTTTGTTCCAGCTTTGGATAATAAAAACCTTGTTTTAGCACCATGGTGCG
AAAAAGTCTCTTGTGAAGATTCAATCAAAAAGAAGAGTTCTGAAGAATCTAAAAATAAAG
CTGAAGAAGAAAAAGGTTTCTGTTTAACTGGTGCCGCCAAATCATTATGTATTCCATTAC
AAAATCAAGAACATGTTAAACTTCCAGAAATTAAAGATGATACTAAATGTTTCTGTTGTC
AAGAAAAAGCAACAAAATA
Length of 3' end seq. 739
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -