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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM686
Library AF
(Link to library)
Clone ID AFM686
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM686P
(Link to Original site)
Representative DNA sequence 
>AFM686 (AFM686Q) /CSM/AF/AFM6-D/AFM686Q.Seq.d/
ACACCTTATTTATTATTTATTTAATATTGTAGCTTTTAATTATTTGATCAAAAATAAAAT
ATATATAAAATCATATACCATTACAAATATACTATTACAAAAATATAATAATAATAATAA
ATATGGATACAACAAATTTTGAAGATATTAGAAACGAATGGATTGAACAAGGACAAGGTC
ATGTATTTAATTGGTTTGATAAATTATCAAATGAAGAGAAATTAAATTTTGAAAATGATA
TTAGAAAAATTAATGTTAAAGAAGTCAATAAAGATTATAAAAATGTTCTTTTAAATAAAG
ATGAACAAAAAATTATGAAATATGAACATTTTGAAAATGTTATGACATTAAATAAAATTA
AAGAACAAGATAAAAAGAAATGGGAAGATATTGGATATGAATTAATTAGTAAAGGTGAAG
TTGCAGTATTATTATTAGCGGGTGGACAAGCAACTAGATTAGGTACAACATTTCCAAAAG
GATTTTATGATGTTGGATTACCATCAAAGAAATCATTATTTCAATTACAAGCTGAAAGAA
TCTATAGATTACAACAATTGGTTAGTGAGAGATATAATGGTAGCTATGATCAAGATTCTA
AACCAATTCAATGGTATATAATGACAAGTGAAGCAACACATTCAGXXXXXXXXXXGGATA
CATGCACGATCAATCAGCGGATTGCGGTGCAAAGGTCGTGTCGAAAAGCGACCCAAAAGA
ACCAGTTGGCGTTATGGCACTCAATGGCGATGGTAAACCATTCGTATTAGAGTATAGCGA
AATCGATGAACAATCTAAATTCAAAAAAGATCAAAATGGTCAATTGGTTTTCAATTATGC
TCATATTTGTATCAATGCTTTCTCTTTTGATTTCTTGGATAGAATTGCAAAGAATCATTT
GGACCATTTGAAATATCATGTTGCCTTCAAAAAAATACCTTCAGCTCATCCAATTAGTGG
TGAACGTCAATCACCATCCTCTCCAAATGGTTGGAAATTGGAGAAATTCATTTTCGATGT
TTTCCCATTCTCAAAGAAAATGGTTTGTTTAGAAATTGAACGTTCAAAAGAATTTTCACC
ACTTAAAAATTGTGGTGGAATGAATTTACCAGATTCACCTGAAACTTGTTTACGTGATAT
CTCAAATCTTCATAAAAGTTTTATTGAAAATTCCGGTGGTAAAATAGATTCTTCAAATTC
AACAATTTGTAAGTATCACCTTTAGTTTCTTTAAATGGTNAAAATTTAAAAAATTTTGTT
AATGATAAAACTTTATTTTACCAATNAAATTAATCAAAATTTAAAAATTAATAAAAATTA
ATAAATAAANAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
tlfiiylil*llii*skikyi*NHIPLQIYYYKNIIIIINMDTTNFEDIRNEWIEQGQGH
VFNWFDKLSNEEKLNFENDIRKINVKEVNKDYKNVLLNKDEQKIMKYEHFENVMTLNKIK
EQDKKKWEDIGYELISKGEVAVLLLAGGQATRLGTTFPKGFYDVGLPSKKSLFQLQAERI
YRLQQLVSERYNGSYDQDSKPIQWYIMTSEATHS---

---GYMHDQSADCGAKVVSKSDPKEPVGVMALNGDGKPFVLEYSEIDEQSKFKKDQNGQL
VFNYAHICINAFSFDFLDRIAKNHLDHLKYHVAFKKIPSAHPISGERQSPSSPNGWKLEK
FIFDVFPFSKKMVCLEIERSKEFSPLKNCGGMNLPDSPETCLRDISNLHKSFIENSGGKI
DSSNSTICKYHL*fl*mvki*killmiklyftnxinqnlkinkn**ixk
Translated Amino Acid sequence (All Frames) 
Frame A:
tpyllfi*ycsf*lfdqk*niykiiyhykytitki*****iwiqqilkiletnglnkdkv
myliglinyqmkrn*ilkmileklmlkksikiikmff*ikmnkkl*nmnilkml*h*ikl
knkikrngkildmn*lvkvklqyyy*rvdkqld*vqhfqkdfmmldyhqrnhyfnyklke
sidynnwlvrdimvamikilnqfngi**qvkqhiq---

---GYMHDQSADCGAKVVSKSDPKEPVGVMALNGDGKPFVLEYSEIDEQSKFKKDQNGQL
VFNYAHICINAFSFDFLDRIAKNHLDHLKYHVAFKKIPSAHPISGERQSPSSPNGWKLEK
FIFDVFPFSKKMVCLEIERSKEFSPLKNCGGMNLPDSPETCLRDISNLHKSFIENSGGKI
DSSNSTICKYHL*fl*mvki*killmiklyftnxinqnlkinkn**ixk

Frame B:
hliyylfnivafnyliknkiyiksytitnillqkynnnnkygynkf*ry*krmd*trtrs
ci*lv**iik*reikf*k*y*kn*c*rsq*rl*kcsfk*r*tknyei*tf*kcydik*n*
rtr*kemgrywi*in**r*scsiiisgwtsn*iryniskril*cwitikeiiisits*kn
l*ittig**ei*w*l*srf*tnsmvyndk*sntf---

---dtctinqriavqrscrkatqknqlalwhsmamvnhsy*siaksmnnlnskkikmvnw
fsimlifvsmlslliswielqriiwti*nimlpskkylqliqlvvnvnhhplqmvgnwrn
sfsmfshsqrkwfv*klnvqknfhhlkivve*iyqihlklvyvisqifikvllkipvvk*
ilqiqqfvsitfsffkwxkfkkfc***nfilpxkliki*klikink*x

Frame C:
tlfiiylil*llii*skikyi*NHIPLQIYYYKNIIIIINMDTTNFEDIRNEWIEQGQGH
VFNWFDKLSNEEKLNFENDIRKINVKEVNKDYKNVLLNKDEQKIMKYEHFENVMTLNKIK
EQDKKKWEDIGYELISKGEVAVLLLAGGQATRLGTTFPKGFYDVGLPSKKSLFQLQAERI
YRLQQLVSERYNGSYDQDSKPIQWYIMTSEATHS---

---iharsisglrckgrvekrpkrtswrygtqwrw*tirirv*rnr*ti*iqkrskwsig
fqlcsylyqcflf*flg*nckesfgpfeiscclqkntfsssn*w*tsitilskwleigei
hfrcfpilkenglfrn*tfkriftt*klwwneftrft*nlft*ylkss*kfy*kfrw*nr
ffkfnnl*vsplvslngxnlknfvndktlfyqxn*skfkn**klinkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM686 (AFM686Q) /CSM/AF/AFM6-D/AFM686Q.Seq.d/                       2141   0.0
AFL848 (AFL848Q) /CSM/AF/AFL8-B/AFL848Q.Seq.d/                       1138   0.0
AFJ336 (AFJ336Q) /CSM/AF/AFJ3-B/AFJ336Q.Seq.d/                       1138   0.0
AFI389 (AFI389Q) /CSM/AF/AFI3-D/AFI389Q.Seq.d/                       1136   0.0
AFJ828 (AFJ828Q) /CSM/AF/AFJ8-B/AFJ828Q.Seq.d/                       1110   0.0
SFJ572 (SFJ572Q) /CSM/SF/SFJ5-C/SFJ572Q.Seq.d/                       1025   0.0
SSB212 (SSB212Q) /CSM/SS/SSB2-A/SSB212Q.Seq.d/                        878   0.0
SSM853 (SSM853Q) /CSM/SS/SSM8-C/SSM853Q.Seq.d/                        482   e-135
SSJ439 (SSJ439Q) /CSM/SS/SSJ4-B/SSJ439Q.Seq.d/                        482   e-135
VSJ880 (VSJ880Q) /CSM/VS/VSJ8-D/VSJ880Q.Seq.d/                         40   0.085
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347366) Dictyostelium discoideum cDNA clone:dda26k22, 3' ...   603   0.0    2
(BJ346611) Dictyostelium discoideum cDNA clone:dda24p12, 3' ...   595   0.0    2
(BJ344446) Dictyostelium discoideum cDNA clone:dda19h09, 3' ...   595   0.0    2
(BJ343963) Dictyostelium discoideum cDNA clone:dda17b23, 3' ...   595   0.0    2
(BJ344740) Dictyostelium discoideum cDNA clone:dda20h08, 3' ...   589   0.0    3
(BJ329963) Dictyostelium discoideum cDNA clone:dda26k22, 5' ...  1019   0.0    1
(BJ327411) Dictyostelium discoideum cDNA clone:dda20h08, 5' ...  1019   0.0    1
(BJ402168) Dictyostelium discoideum cDNA clone:dds20o17, 3' ...   595   0.0    2
(BJ329294) Dictyostelium discoideum cDNA clone:dda24p12, 5' ...   969   0.0    2
(BJ326720) Dictyostelium discoideum cDNA clone:dda17b23, 5' ...   890   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001608_1(BT001608|pid:none) Drosophila melanogaster RE31673 fu...   148   4e-34
AE014134_1146(AE014134|pid:none) Drosophila melanogaster chromos...   148   4e-34
AE014134_1147(AE014134|pid:none) Drosophila melanogaster chromos...   148   4e-34
BC044137_1(BC044137|pid:none) Danio rerio UDP-N-acteylglucosamin...   144   4e-34
CR848106_1(CR848106|pid:none) Xenopus tropicalis finished cDNA, ...   144   9e-33
BC084497_1(BC084497|pid:none) Xenopus tropicalis UDP-N-acetylglu...   144   9e-33
AB011004_1(AB011004|pid:none) Homo sapiens HuUAP1 mRNA for UDP-N...   141   6e-32
FJ380203_1(FJ380203|pid:none) Spodoptera exigua UDP-N-acetylgluc...   140   1e-31
BC112693_1(BC112693|pid:none) Bos taurus UDP-N-acteylglucosamine...   140   1e-31
BC009377_1(BC009377|pid:none) Homo sapiens UDP-N-acteylglucosami...   139   2e-31
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM686 is

5' end seq. ID AFM686F
5' end seq. 
>AFM686F.Seq
ACACCTTATTTATTATTTATTTAATATTGTAGCTTTTAATTATTTGATCAAAAATAAAAT
ATATATAAAATCATATACCATTACAAATATACTATTACAAAAATATAATAATAATAATAA
ATATGGATACAACAAATTTTGAAGATATTAGAAACGAATGGATTGAACAAGGACAAGGTC
ATGTATTTAATTGGTTTGATAAATTATCAAATGAAGAGAAATTAAATTTTGAAAATGATA
TTAGAAAAATTAATGTTAAAGAAGTCAATAAAGATTATAAAAATGTTCTTTTAAATAAAG
ATGAACAAAAAATTATGAAATATGAACATTTTGAAAATGTTATGACATTAAATAAAATTA
AAGAACAAGATAAAAAGAAATGGGAAGATATTGGATATGAATTAATTAGTAAAGGTGAAG
TTGCAGTATTATTATTAGCGGGTGGACAAGCAACTAGATTAGGTACAACATTTCCAAAAG
GATTTTATGATGTTGGATTACCATCAAAGAAATCATTATTTCAATTACAAGCTGAAAGAA
TCTATAGATTACAACAATTGGTTAGTGAGAGATATAATGGTAGCTATGATCAAGATTCTA
AACCAATTCAATGGTATATAATGACAAGTGAAGCAACACATTCAGXXXXXXXXXX
Length of 5' end seq. 655
3' end seq. ID AFM686Z
3' end seq. 
>AFM686Z.Seq
XXXXXXXXXXGGATACATGCACGATCAATCAGCGGATTGCGGTGCAAAGGTCGTGTCGAA
AAGCGACCCAAAAGAACCAGTTGGCGTTATGGCACTCAATGGCGATGGTAAACCATTCGT
ATTAGAGTATAGCGAAATCGATGAACAATCTAAATTCAAAAAAGATCAAAATGGTCAATT
GGTTTTCAATTATGCTCATATTTGTATCAATGCTTTCTCTTTTGATTTCTTGGATAGAAT
TGCAAAGAATCATTTGGACCATTTGAAATATCATGTTGCCTTCAAAAAAATACCTTCAGC
TCATCCAATTAGTGGTGAACGTCAATCACCATCCTCTCCAAATGGTTGGAAATTGGAGAA
ATTCATTTTCGATGTTTTCCCATTCTCAAAGAAAATGGTTTGTTTAGAAATTGAACGTTC
AAAAGAATTTTCACCACTTAAAAATTGTGGTGGAATGAATTTACCAGATTCACCTGAAAC
TTGTTTACGTGATATCTCAAATCTTCATAAAAGTTTTATTGAAAATTCCGGTGGTAAAAT
AGATTCTTCAAATTCAACAATTTGTAAGTATCACCTTTAGTTTCTTTAAATGGTNAAAAT
TTAAAAAATTTTGTTAATGATAAAACTTTATTTTACCAATNAAATTAATCAAAATTTAAA
AATTAATAAAAATTAATAAATAAANAAA
Length of 3' end seq. 688
Connected seq. ID AFM686P
Connected seq. 
>AFM686P.Seq
ACACCTTATTTATTATTTATTTAATATTGTAGCTTTTAATTATTTGATCAAAAATAAAAT
ATATATAAAATCATATACCATTACAAATATACTATTACAAAAATATAATAATAATAATAA
ATATGGATACAACAAATTTTGAAGATATTAGAAACGAATGGATTGAACAAGGACAAGGTC
ATGTATTTAATTGGTTTGATAAATTATCAAATGAAGAGAAATTAAATTTTGAAAATGATA
TTAGAAAAATTAATGTTAAAGAAGTCAATAAAGATTATAAAAATGTTCTTTTAAATAAAG
ATGAACAAAAAATTATGAAATATGAACATTTTGAAAATGTTATGACATTAAATAAAATTA
AAGAACAAGATAAAAAGAAATGGGAAGATATTGGATATGAATTAATTAGTAAAGGTGAAG
TTGCAGTATTATTATTAGCGGGTGGACAAGCAACTAGATTAGGTACAACATTTCCAAAAG
GATTTTATGATGTTGGATTACCATCAAAGAAATCATTATTTCAATTACAAGCTGAAAGAA
TCTATAGATTACAACAATTGGTTAGTGAGAGATATAATGGTAGCTATGATCAAGATTCTA
AACCAATTCAATGGTATATAATGACAAGTGAAGCAACACATTCAG----------GGATA
CATGCACGATCAATCAGCGGATTGCGGTGCAAAGGTCGTGTCGAAAAGCGACCCAAAAGA
ACCAGTTGGCGTTATGGCACTCAATGGCGATGGTAAACCATTCGTATTAGAGTATAGCGA
AATCGATGAACAATCTAAATTCAAAAAAGATCAAAATGGTCAATTGGTTTTCAATTATGC
TCATATTTGTATCAATGCTTTCTCTTTTGATTTCTTGGATAGAATTGCAAAGAATCATTT
GGACCATTTGAAATATCATGTTGCCTTCAAAAAAATACCTTCAGCTCATCCAATTAGTGG
TGAACGTCAATCACCATCCTCTCCAAATGGTTGGAAATTGGAGAAATTCATTTTCGATGT
TTTCCCATTCTCAAAGAAAATGGTTTGTTTAGAAATTGAACGTTCAAAAGAATTTTCACC
ACTTAAAAATTGTGGTGGAATGAATTTACCAGATTCACCTGAAACTTGTTTACGTGATAT
CTCAAATCTTCATAAAAGTTTTATTGAAAATTCCGGTGGTAAAATAGATTCTTCAAATTC
AACAATTTGTAAGTATCACCTTTAGTTTCTTTAAATGGTNAAAATTTAAAAAATTTTGTT
AATGATAAAACTTTATTTTACCAATNAAATTAATCAAAATTTAAAAATTAATAAAAATTA
ATAAATAAANAAA
Length of connected seq. 1323
Full length Seq ID -
Full length Seq. -
Length of full length seq. -