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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM685
Library AF
(Link to library)
Clone ID AFM685
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM685 (AFM685Q) /CSM/AF/AFM6-D/AFM685Q.Seq.d/
XXXXXXXXXXATCACCACAATCANCAATATCAACAACATCAACAACCAACTCAACAAGAA
TCTCAAGAACAAACCCAACAACCAGAGCAAACTCAATCCACTAATCAAAGTAATCAAAGA
AGAAATAGCGAGAGTAGAAATGGTAAATCACCACAAAAACAACCACAAAAACAATCACAA
GTTCAACAACCAAGTTCAACAACTGAGAACACTGATCAACAACAACAACAACAACCACCA
CAAGAACAACAACAACAACAAGAACAACCACAACAACCACAAGAACAACAACAACAACCA
AATGTAGTTGATGAAGCCGAGAGACCAAAGGAACAACAACAACAACCACAACAACAACAA
CAAACGATTGATAAGAAAGGTTATAACAATAATAGAAGAGGTGGTAGACACTATAGTTAC
AATAATAATTATAATAGCCATCATCATAGACATAATGGAATAAATAAAAATAGTTCTTCA
ATGTATCATNATAAAAAAGACACGAGGGTTAAAACAGAACAAATAAATTNAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---HHNXQYQQHQQPTQQESQEQTQQPEQTQSTNQSNQRRNSESRNGKSPQKQPQKQSQV
QQPSSTTENTDQQQQQQPPQEQQQQQEQPQQPQEQQQQPNVVDEAERPKEQQQQPQQQQQ
TIDKKGYNNNRRGGRHYSYNNNYNSHHHRHNGINKNSSSMYHXKKDTRVKTEQINX
Translated Amino Acid sequence (All Frames) 
Frame A:
---spqsxisttsttnstrisrtnpttransih*sk*skkk*re*kw*ittktttktits
sttkfnn*eh*sttttttttrtttttrttttttrtttttkcs**sretkgtttttttttt
nd**erl*q**krw*tl*lq**l**pss*t*wnk*k*ffnvsx*krheg*nrtnkx


Frame B:
---HHNXQYQQHQQPTQQESQEQTQQPEQTQSTNQSNQRRNSESRNGKSPQKQPQKQSQV
QQPSSTTENTDQQQQQQPPQEQQQQQEQPQQPQEQQQQPNVVDEAERPKEQQQQPQQQQQ
TIDKKGYNNNRRGGRHYSYNNNYNSHHHRHNGINKNSSSMYHXKKDTRVKTEQINX


Frame C:
---ttixninninnqlnknlknkpnnqsklnplikvikeeiarvemvnhhknnhknnhkf
nnqvqqlrtlinnnnnnhhknnnnnknnhnnhknnnnnqm*lmkprdqrnnnnnhnnnnk
rlirkvitiieevvdtivtiiiiiaiiidime*ikivlqcixikktrglkqnk*ix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM685 (AFM685Q) /CSM/AF/AFM6-D/AFM685Q.Seq.d/                        323   2e-87
CFD509 (CFD509Q) /CSM/CF/CFD5-A/CFD509Q.Seq.d/                        266   3e-70
CHC216 (CHC216Q) /CSM/CH/CHC2-A/CHC216Q.Seq.d/                        174   9e-43
CHB764 (CHB764Q) /CSM/CH/CHB7-C/CHB764Q.Seq.d/                        147   2e-34
CHB864 (CHB864Q) /CSM/CH/CHB8-C/CHB864Q.Seq.d/                        127   2e-28
CHQ250 (CHQ250Q) /CSM/CH/CHQ2-C/CHQ250Q.Seq.d/                         40   0.033
VSJ126 (VSJ126Q) /CSM/VS/VSJ1-B/VSJ126Q.Seq.d/                         36   0.52
VSF777 (VSF777Q) /CSM/VS/VSF7-D/VSF777Q.Seq.d/                         36   0.52
VSC690 (VSC690Q) /CSM/VS/VSC6-D/VSC690Q.Seq.d/                         36   0.52
VHP151 (VHP151Q) /CSM/VH/VHP1-C/VHP151Q.Seq.d/                         36   0.52
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347354) Dictyostelium discoideum cDNA clone:dda26i22, 3' ...   319   e-104  2
(BJ374464) Dictyostelium discoideum cDNA clone:ddc8a03, 3' e...   224   2e-65  3
(BJ377860) Dictyostelium discoideum cDNA clone:ddc26o04, 3' ...   125   2e-36  2
(BJ377748) Dictyostelium discoideum cDNA clone:ddc25p15, 3' ...   143   8e-30  1
(BJ377749) Dictyostelium discoideum cDNA clone:ddc25p16, 3' ...   123   7e-24  1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    36   0.057  2
(AL844507) Plasmodium falciparum chromosome 8.                     48   0.34   1
(CU855638) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.77   3
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     46   1.4    1
(AC224112) Bos taurus clone CH240-449F4, WORKING DRAFT SEQUE...    46   1.4    1
dna update 2009. 4.13
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.299    0.117    0.305

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 208,672,460
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM685 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM685Z
3' end seq. 
>AFM685Z.Seq
XXXXXXXXXXATCACCACAATCANCAATATCAACAACATCAACAACCAACTCAACAAGAA
TCTCAAGAACAAACCCAACAACCAGAGCAAACTCAATCCACTAATCAAAGTAATCAAAGA
AGAAATAGCGAGAGTAGAAATGGTAAATCACCACAAAAACAACCACAAAAACAATCACAA
GTTCAACAACCAAGTTCAACAACTGAGAACACTGATCAACAACAACAACAACAACCACCA
CAAGAACAACAACAACAACAAGAACAACCACAACAACCACAAGAACAACAACAACAACCA
AATGTAGTTGATGAAGCCGAGAGACCAAAGGAACAACAACAACAACCACAACAACAACAA
CAAACGATTGATAAGAAAGGTTATAACAATAATAGAAGAGGTGGTAGACACTATAGTTAC
AATAATAATTATAATAGCCATCATCATAGACATAATGGAATAAATAAAAATAGTTCTTCA
ATGTATCATNATAAAAAAGACACGAGGGTTAAAACAGAACAAATAAATTNAT
Length of 3' end seq. 532
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -