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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM683
Library AF
(Link to library)
Clone ID AFM683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM683P
(Link to Original site)
Representative DNA sequence 
>AFM683 (AFM683Q) /CSM/AF/AFM6-D/AFM683Q.Seq.d/
ATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATA
AAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATAT
CTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATAT
ACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAA
GAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAA
AACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTT
GTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGT
ATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATT
CCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAA
GGATTCTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGXXXX
XXXXXXTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCAGCTGC
TTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTTGTAAA
GTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATT
AAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCA
TGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTC
CCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATT
GCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACT
GGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGT
AGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCA
TCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCT
GCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGC
TCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
IQFCNYKKRNQIIIYIYKNIKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEY
TCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDF
VPYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPE
GFYCEEQGGSACCVPHHD---

---SPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPTC
IKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAAST
IATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSE
PSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSATS*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
IQFCNYKKRNQIIIYIYKNIKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEY
TCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDF
VPYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPE
GFYCEEQGGSACCVPHHD---

---SPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPTC
IKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAAST
IATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSE
PSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAASSAASSESSESSSATS*ik

Frame B:
fnfviikkgik*lyiyiki*kkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqni
hvnqievvhiyhlyhvvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhieil
yhiihqiqphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlvimvavinvte*dvqk
dsivknkvvvhaayhimt---

---hqrmtnvngivvhqvpaasivetvhtvlpimyshnfvkllnvqlislvk*leviqlv
lkqdhryhhhiaqlvqsyhqhvitle*fvfkyqaivpildshvahliqfvfihqllllqp
lqqlhqlsqlqplqllqvqqlvelqlvvqllivvllpqpivalpphhhqavllqvplqvn
hqvaplqvvlhpllqvalhplpqvvlhhhqlqvqlhhqlqaqkaqkahqplhk*

Frame C:
sil*l*kkesnnyiyi*kykkk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfriy
m*ir*klcifticimlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rfc
tisftkynhm*iirl*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qnemsrr
ill*rtrw*cmlrtts*r---

---tke*rm*maslstrfqllq**krstlscq*cipttl*sysmsn*fll*nd*r*snly
*skttgttttllnlcraiism*srwndlysstkqlyqy*ipmlpissnlyssinyccfnh
cnncincrnynlcnycrynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk*t
ik*rrfk*csilcfk*rsilclk*csiiisfkfsciiscklrklrklishfink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB244 (SLB244Q) /CSM/SL/SLB2-B/SLB244Q.Seq.d/                       1380   0.0
SLB171 (SLB171Q) /CSM/SL/SLB1-C/SLB171Q.Seq.d/                       1380   0.0
SLB132 (SLB132Q) /CSM/SL/SLB1-B/SLB132Q.Seq.d/                       1380   0.0
SLA236 (SLA236Q) /CSM/SL/SLA2-B/SLA236Q.Seq.d/                       1380   0.0
SHA862 (SHA862Q) /CSM/SH/SHA8-C/SHA862Q.Seq.d/                       1380   0.0
SFK779 (SFK779Q) /CSM/SF/SFK7-D/SFK779Q.Seq.d/                       1380   0.0
SFK752 (SFK752Q) /CSM/SF/SFK7-C/SFK752Q.Seq.d/                       1380   0.0
SFK641 (SFK641Q) /CSM/SF/SFK6-B/SFK641Q.Seq.d/                       1380   0.0
SFJ426 (SFJ426Q) /CSM/SF/SFJ4-B/SFJ426Q.Seq.d/                       1380   0.0
SFJ259 (SFJ259Q) /CSM/SF/SFJ2-C/SFJ259Q.Seq.d/                       1380   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com...  1380   0.0    1
(AU052205) Dictyostelium discoideum slug cDNA, clone SLA236.     1380   0.0    1
(AU033627) Dictyostelium discoideum slug cDNA, clone SLB244.     1380   0.0    1
(AU033563) Dictyostelium discoideum slug cDNA, clone SLB171.     1380   0.0    1
(AU033525) Dictyostelium discoideum slug cDNA, clone SLB132.     1380   0.0    1
(BJ403598) Dictyostelium discoideum cDNA clone:dds25l16, 3' ...  1380   0.0    1
(BJ402901) Dictyostelium discoideum cDNA clone:dds18k14, 3' ...  1380   0.0    1
(BJ402864) Dictyostelium discoideum cDNA clone:dds18c13, 3' ...  1380   0.0    1
(BJ402820) Dictyostelium discoideum cDNA clone:dds18j08, 3' ...  1380   0.0    1
(BJ402817) Dictyostelium discoideum cDNA clone:dds18i11, 3' ...  1380   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       428   e-118
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   422   e-116
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   172   2e-41
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   102   3e-20
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    93   2e-17
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    92   4e-17
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    83   2e-14
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    79   4e-13
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    72   5e-11
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...    67   1e-09
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM683 is

5' end seq. ID AFM683F
5' end seq. 
>AFM683F.Seq
ATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATA
AAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATAT
CTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATAT
ACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAA
GAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAA
AACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTT
GTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGT
ATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATT
CCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAA
GGATTCTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGGXXXX
XXXXXX
Length of 5' end seq. 606
3' end seq. ID AFM683Z
3' end seq. 
>AFM683Z.Seq
XXXXXXXXXXTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCAG
CTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTTG
TAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTG
TATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATC
AGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAG
ATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAAC
CATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAAC
AACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGA
TAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGA
ACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATC
CTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGC
AAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
Length of 3' end seq. 706
Connected seq. ID AFM683P
Connected seq. 
>AFM683P.Seq
ATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATA
AAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATAT
CTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATAT
ACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAA
GAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAA
AACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTT
GTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGT
ATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATT
CCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAA
GGATTCTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGG----
------TCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCAGCTGC
TTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTTGTAAA
GTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATT
AAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCA
TGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTC
CCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATT
GCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACT
GGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGT
AGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGAACCA
TCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCT
GCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGC
TCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
Length of connected seq. 1292
Full length Seq ID -
Full length Seq. -
Length of full length seq. -