VFI476
Library VF
(Link to library)
Clone ID VFI476
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15013-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VFI476 (VFI476Q) /CSM/VF/VFI4-D/VFI476Q.Seq.d/
TGGCCTACTGGTANNTCTAAACACCAATAAAAAAGATGTTAAGCAAATCAAATAATATCA
GAAAAGTCTTTGCCAGAGGATTCACAACTTACGTTCAACCAGGTAAATTCAATGCTGAAA
CCAACGAAACCATTGGCAATAGAATTAGCAATGTTTGTGAAAAATTCTCATATAATGATG
CAATCTCTATTCCAGATCATGAAAACTACACTTTAACTTATAATGATGTTTTACAAAATA
CAAGAGGTTTAGCAGGTGGTTTTATTGAGCACAGCATTAAAGATGATCAAACAATTGTTT
CAAATTCATTTGGTGTTGATAGTACAATGACACATATTGCAGCATCATTTGCAGGTTTAA
ATTATGTATCAATTCCACCAACTTCAACATTCTCAGAAATTGGAACTCATTTAAATAATC
AAAAAGCATCATCATTCGTTATGGCTGATTCAAACCAAAGAGTTATGGTTGATGAAGCAT
TAGAATTCTTCCCAAATTTAAAAACTATTTATAACGATGAATATCACAGAGATAACAGAT
TCCCAGAATTAAAACATATTTTTTCAACAGGTGCATCACAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
aywxx*TPIKKMLSKSNNIRKVFARGFTTYVQPGKFNAETNETIGNRISNVCEKFSYNDA
ISIPDHENYTLTYNDVLQNTRGLAGGFIEHSIKDDQTIVSNSFGVDSTMTHIAASFAGLN
YVSIPPTSTFSEIGTHLNNQKASSFVMADSNQRVMVDEALEFFPNLKTIYNDEYHRDNRF
PELKHIFSTGAS---


Translated Amino Acid sequence (All Frames)
Frame A:
wptgxskhq*krc*anqiisekslpedsqltfnqvnsmlkptkplaielamfvknshimm
qslfqimkttl*limmfykiqev*qvvllstalkmikqlfqihlvlivq*hilqhhlqv*
imyqfhqlqhsqkleli*iikkhhhslwliqtkelwlmkh*nssqi*klfitmniteitd
sqn*niffqqvhh---


Frame B:
gllvxlntnkkdvkqik*yqkslcqrihnlrstr*iqc*nqrnhwq*n*qcl*kili**c
nlysrs*klhfnl**cftkykrfsrwfy*aqh*r*snncfkfiwc**yndtycsiicrfk
lcinstnfnilrnwnsfk*sksiiiryg*fkpksyg**sirilpkfknyl*r*isqr*qi
priktyffnrcit---


Frame C:
aywxx*TPIKKMLSKSNNIRKVFARGFTTYVQPGKFNAETNETIGNRISNVCEKFSYNDA
ISIPDHENYTLTYNDVLQNTRGLAGGFIEHSIKDDQTIVSNSFGVDSTMTHIAASFAGLN
YVSIPPTSTFSEIGTHLNNQKASSFVMADSNQRVMVDEALEFFPNLKTIYNDEYHRDNRF
PELKHIFSTGAS---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI476 (VFI476Q) /CSM/VF/VFI4-D/VFI476Q.Seq.d/ 1140 0.0
VHC545 (VHC545Q) /CSM/VH/VHC5-B/VHC545Q.Seq.d/ 1122 0.0
VFM515 (VFM515Q) /CSM/VF/VFM5-A/VFM515Q.Seq.d/ 1122 0.0
VFI119 (VFI119Q) /CSM/VF/VFI1-A/VFI119Q.Seq.d/ 1122 0.0
AFN167 (AFN167Q) /CSM/AF/AFN1-C/AFN167Q.Seq.d/ 1122 0.0
VHC645 (VHC645Q) /CSM/VH/VHC6-B/VHC645Q.Seq.d/ 1070 0.0
AFK235 (AFK235Q) /CSM/AF/AFK2-B/AFK235Q.Seq.d/ 1035 0.0
VFH839 (VFH839Q) /CSM/VF/VFH8-B/VFH839Q.Seq.d/ 1019 0.0
AFL539 (AFL539Q) /CSM/AF/AFL5-B/AFL539Q.Seq.d/ 950 0.0
AFO722 (AFO722Q) /CSM/AF/AFO7-A/AFO722Q.Seq.d/ 898 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.007 10
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 34 0.011 10
AC134522|AC134522.7 Medicago truncatula clone mth2-12g4, complete sequence. 34 0.035 10
BX005370|BX005370.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-21P9. 32 0.037 10
CR318610|CR318610.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-14B14. 40 0.069 6
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6. 34 0.12 11
AC106084|AC106084.4 Rattus norvegicus clone CH230-121C20, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 48 0.14 1
AX344939|AX344939.1 Sequence 10 from Patent WO0200928. 48 0.14 1
Z84719|Z84719.1 Human DNA sequence from clone RP3-340G1 on chromosome 6q16. 34 0.16 5
AL446586|AL446586.1 Paramecium tetraurelia sequence M07G09r of the end of plasmid PT007M17. Similarity to CG1405 PROTEIN. 38 0.17 2
dna update 2004. 3.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000758_2673(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 49 8e-05
CP001103_1440(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 43 0.007
CP000555_344(CP000555|pid:none) Methylibium petroleiphilum PM1, ... 42 0.012
CP000605_592(CP000605|pid:none) Bifidobacterium longum DJO10A, c... 40 0.061
AE014295_507(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 39 0.080
CP000686_3560(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 38 0.23
AE003849_1512(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 37 0.40
AP006627_586(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, co... 37 0.52
CP000153_1648(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 36 0.68
CP000813_317(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 36 0.89
protein update 2009. 6.21
PSORT

psg: 0.54 gvh: 0.37 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
32.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFI476 is mit

5' end seq. ID VFI476F
5' end seq.
>VFI476F.Seq
TGGCCTACTGGTANNTCTAAACACCAATAAAAAAGATGTTAAGCAAATCAAATAATATCA
GAAAAGTCTTTGCCAGAGGATTCACAACTTACGTTCAACCAGGTAAATTCAATGCTGAAA
CCAACGAAACCATTGGCAATAGAATTAGCAATGTTTGTGAAAAATTCTCATATAATGATG
CAATCTCTATTCCAGATCATGAAAACTACACTTTAACTTATAATGATGTTTTACAAAATA
CAAGAGGTTTAGCAGGTGGTTTTATTGAGCACAGCATTAAAGATGATCAAACAATTGTTT
CAAATTCATTTGGTGTTGATAGTACAATGACACATATTGCAGCATCATTTGCAGGTTTAA
ATTATGTATCAATTCCACCAACTTCAACATTCTCAGAAATTGGAACTCATTTAAATAATC
AAAAAGCATCATCATTCGTTATGGCTGATTCAAACCAAAGAGTTATGGTTGATGAAGCAT
TAGAATTCTTCCCAAATTTAAAAACTATTTATAACGATGAATATCACAGAGATAACAGAT
TCCCAGAATTAAAACATATTTTTTCAACAGGTGCATCACAANNNNNNNNNN
Length of 5' end seq. 591
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -