AFM673
Library AF
(Link to library)
Clone ID AFM673
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM673 (AFM673Q) /CSM/AF/AFM6-D/AFM673Q.Seq.d/
XXXXXXXXXXCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGA
TTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAAC
TGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAA
CATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGT
TGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCC
AAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGA
AGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAA
TTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAAT
GTCAAAGGATACAANGAANAATTGTGNNATTGCATCAG
sequence update 2009. 4. 3
Translated Amino Acid sequence
---EENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNI
TAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGK
DDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMS
KDTXXNCXIAS


Translated Amino Acid sequence (All Frames)
Frame A:
---qkktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlilvqplkvmlt
llpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkv
kmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*c
qriqxxivxlhq


Frame B:
---rrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*h
ycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*
r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnv
kgyxexlxxci


Frame C:
---EENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNI
TAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGK
DDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMS
KDTXXNCXIAS


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM673 (AFM673Q) /CSM/AF/AFM6-D/AFM673Q.Seq.d/ 1102 0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/ 1094 0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/ 1094 0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/ 1094 0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/ 1094 0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/ 1094 0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/ 1094 0.0
AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/ 1094 0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/ 1094 0.0
AFK761 (AFK761Q) /CSM/AF/AFK7-C/AFK761Q.Seq.d/ 1094 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347313) Dictyostelium discoideum cDNA clone:dda26a20, 3' ... 1102 0.0 1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina... 1094 0.0 1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462. 1094 0.0 1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524. 1094 0.0 1
(BJ400695) Dictyostelium discoideum cDNA clone:dds14i12, 3' ... 1094 0.0 1
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e... 1094 0.0 1
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ... 1094 0.0 1
(BJ347103) Dictyostelium discoideum cDNA clone:dda26i06, 3' ... 1094 0.0 1
(BJ347067) Dictyostelium discoideum cDNA clone:dda26c01, 3' ... 1094 0.0 1
(BJ346339) Dictyostelium discoideum cDNA clone:dda30j13, 3' ... 1094 0.0 1
dna update 2009. 4.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 367 e-100
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 198 7e-50
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 198 7e-50
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 178 8e-44
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 177 2e-43
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li... 177 2e-43
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 174 1e-42
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 171 2e-41
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like... 170 2e-41
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like... 170 2e-41
protein update 2009. 4. 6
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM673 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM673Z
3' end seq.
>AFM673Z.Seq
XXXXXXXXXXCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTGA
TTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAAC
TGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAA
CATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGT
TGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCC
AAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGA
AGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAA
TTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAAT
GTCAAAGGATACAANGAANAATTGTGNNATTGCATCAG
Length of 3' end seq. 578
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -