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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM666
Library AF
(Link to library)
Clone ID AFM666
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM666P
(Link to Original site)
Representative DNA sequence 
>AFM666 (AFM666Q) /CSM/AF/AFM6-C/AFM666Q.Seq.d/
ATAAAATATTTTAATAAATAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAAAT
ACAAAAAATGAATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAATT
TGTTGTTGATAGCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCTCA
ACAACCTCAACAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAATCAAGAGGATTCTTTAGTATTTTTGGTAGATCAGCAGC
ACCACAAGCACCACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCTAA
AATAAAGAAAGCAACAACCAATGTATTAGTAGTCAATTTAGGTACAGTTGCAAAGGAATC
ATNTATTCAAACTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATAT
CAATGCATTAAAAGAGATAACATTAAATGATGGTAAAAAGCATCCAAATATTCCAACTGA
TGGTGGTTTCGATGGAAATAAAACTTGGAAATGTGAATTTTGTTATGAAGAGAATGAAAT
TGTCATTGATAAAGXXXXXXXXXXTCAATTTAAATGATGGTTTCAAAGAAATTCTTAGTT
TACCTACTTTAGCAACAAATGTATCCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTA
GTGACTTTGATAATAATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATG
TAAATCAAGACACAACAATTTCATTTGAATATGGTGTTAGATCCTCTAAATTAATTGATA
AATCTTTGAAATCAATACCATTCCAATTACAAATCTTTTATACAACACTCACTGGTAAGA
AATGTGTAAGAATGATCACTCAAACTCAAGAGATTACAACAAGCTCTGATTTGGCTGAAG
AACATGCAAACATCGAGGCATTGGGTATTAATATGGTTCAAACCTCTACAAAGATTGCTT
CATCAGGTGATTATGAAAAATCTCGTGCTAAAAATTATTCACATGCTGGACTTATGCAAA
AGGTAATGATGAAGAAACAAAAGGCTACTAAAGTCGATTCAGATGAAATCGATTCAATGT
CAAATTATATGCAACAAGCTCAAGATATTGAAACTCAACTATCAAATACTGTTTCAAATG
AAAAGAGTTATAATTCAAGTGGTGATAGATTAAAATCACGTCAACAAAATCGCGATGATG
CAACTGCTAAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
*nilinkkikqinknk*k*IQKMNCGSKYTFVQDDEEEEFVVDSNIFFQGAQPQQPQQPQ
QPQQPQQQQQQQQQQQQQQQQQQQQQQSRGFFSIFGRSAAPQAPPPAPMNNRAPNQLKAK
IKKATTNVLVVNLGTVAKESXIQTGDGYFCKKCNCGFSNINALKEITLNDGKKHPNIPTD
GGFDGNKTWKCEFCYEENEIVIDK---

---NLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTT
ISFEYGVRSSKLIDKSLKSIPFQLQIFYTTLTGKKCVRMITQTQEITTSSDLAEEHANIE
ALGINMVQTSTKIASSGDYEKSRAKNYSHAGLMQKVMMKKQKATKVDSDEIDSMSNYMQQ
AQDIETQLSNTVSNEKSYNSSGDRLKSRQQNRDDATAN
Translated Amino Acid sequence (All Frames) 
Frame A:
ikyfnk*kn*tnk*kqikintknelwfkiyfcsr**rgricc**qyflsrcststtstts
ttsttstttttttttttttttttttttikril*yfw*issttstttstne*sctkst*s*
nkesnnqcissqfrysckgixysnw*wlll*km*lwfqqyqcikrdnik*w*kaskysn*
wwfrwk*nlem*ill*re*nch**---

---si*mmvskkflvyll*qqmyplryssikvftlvtliiiiilkrvllke*lvm*iktq
qfhlnmvldpln*linl*nqyhsnyksfiqhslvrnv*e*slklkrlqqaliwlknmqts
rhwvliwfkplqrllhqvimknlvlkiihmldlckr***rnkrllksiqmksiqcqiicn
klkilklnyqilfqmkrviiqvvid*nhvnkiammqll

Frame B:
*nilinkkikqinknk*k*IQKMNCGSKYTFVQDDEEEEFVVDSNIFFQGAQPQQPQQPQ
QPQQPQQQQQQQQQQQQQQQQQQQQQQSRGFFSIFGRSAAPQAPPPAPMNNRAPNQLKAK
IKKATTNVLVVNLGTVAKESXIQTGDGYFCKKCNCGFSNINALKEITLNDGKKHPNIPTD
GGFDGNKTWKCEFCYEENEIVIDK---

---qfk*wfqrns*ftyfsnkcir*dipp*rslr**l*****y*kefc*ksdw*cksrhn
nfi*iwc*il*in**ifeintipitnllynthw*emckndhsnsrdynkl*fg*rtckhr
gigy*ygsnlykdcfir*l*kisc*klftcwtyakgndeetkgy*srfr*nrfnvklyat
ssry*nstikycfk*kel*fkw**ikitstksr*cnc*

Frame C:
kif**ikklnk*iktnknkykk*ivvqnillfkmmkrknllliaifsfkvlnlnnlnnln
nlnnlnnnnnnnnnnnnnnnnnnnnnnqedslvflvdqqhhkhhhqhq*iivhqinlklk
*rkqqpmy**si*vqlqrnhxfklvmvtfvknvivvsaismh*kr*h*mmvksiqifqlm
vvsmeiklgnvnfvmkrmklslik---

---NLNDGFKEILSLPTLATNVSVKIFLHKGLYVSDFDNNNNTEKSFVERVIGNVNQDTT
ISFEYGVRSSKLIDKSLKSIPFQLQIFYTTLTGKKCVRMITQTQEITTSSDLAEEHANIE
ALGINMVQTSTKIASSGDYEKSRAKNYSHAGLMQKVMMKKQKATKVDSDEIDSMSNYMQQ
AQDIETQLSNTVSNEKSYNSSGDRLKSRQQNRDDATAN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM666 (AFM666Q) /CSM/AF/AFM6-C/AFM666Q.Seq.d/                       1935   0.0
VHD313 (VHD313Q) /CSM/VH/VHD3-A/VHD313Q.Seq.d/                       1275   0.0
VHA146 (VHA146Q) /CSM/VH/VHA1-B/VHA146Q.Seq.d/                       1275   0.0
AHE161 (AHE161Q) /CSM/AH/AHE1-C/AHE161Q.Seq.d/                       1275   0.0
VHC281 (VHC281Q) /CSM/VH/VHC2-D/VHC281Q.Seq.d/                       1269   0.0
CHH115 (CHH115Q) /CSM/CH/CHH1-A/CHH115Q.Seq.d/                       1269   0.0
AFB295 (AFB295Q) /CSM/AF/AFB2-D/AFB295Q.Seq.d/                       1267   0.0
VHK474 (VHK474Q) /CSM/VH/VHK4-D/VHK474Q.Seq.d/                       1235   0.0
VHF367 (VHF367Q) /CSM/VH/VHF3-C/VHF367Q.Seq.d/                       1209   0.0
VHH660 (VHH660Q) /CSM/VH/VHH6-C/VHH660Q.Seq.d/                       1197   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347241) Dictyostelium discoideum cDNA clone:dda26c18, 3' ...  1283   0.0    1
(BJ438503) Dictyostelium discoideum cDNA clone:ddv37j03, 3' ...  1275   0.0    1
(BJ436508) Dictyostelium discoideum cDNA clone:ddv31k11, 3' ...  1275   0.0    1
(BJ350365) Dictyostelium discoideum cDNA clone:dda39i15, 3' ...  1275   0.0    1
(BJ437903) Dictyostelium discoideum cDNA clone:ddv35a22, 3' ...  1269   0.0    1
(BJ379843) Dictyostelium discoideum cDNA clone:ddc36m03, 3' ...  1269   0.0    1
(BJ340803) Dictyostelium discoideum cDNA clone:dda3m24, 3' e...  1267   0.0    1
(BJ439775) Dictyostelium discoideum cDNA clone:ddv41f17, 3' ...  1209   0.0    1
(BJ441393) Dictyostelium discoideum cDNA clone:ddv46g16, 3' ...  1197   0.0    1
(BJ442909) Dictyostelium discoideum cDNA clone:ddv51g08, 3' ...  1193   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_2(AC117267|pid:none) Dictyostelium discoideum chromosom...    67   1e-09
CP000412_70(CP000412|pid:none) Lactobacillus delbrueckii subsp. ...    36   3.2
CR380952_27(CR380952|pid:none) Candida glabrata strain CBS138 ch...    36   3.2
CR954253_92(CR954253|pid:none) Lactobacillus delbrueckii subsp. ...    36   3.2
AB030647_1(AB030647|pid:none) Mus musculus mRNA for nuclear memb...    35   4.1
CR548612_462(CR548612|pid:none) Paramecium tetraurelia macronucl...    35   4.1
X99145_1(X99145|pid:none) Canis familiaris mRNA for C3VS protein.      35   4.1
(Q9GL21) RecName: Full=Uveal autoantigen with coiled-coil domain...    35   4.1
BC042415_1(BC042415|pid:none) Mus musculus uveal autoantigen wit...    35   4.1
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM666 is

5' end seq. ID AFM666F
5' end seq. 
>AFM666F.Seq
ATAAAATATTTTAATAAATAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAAAT
ACAAAAAATGAATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAATT
TGTTGTTGATAGCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCTCA
ACAACCTCAACAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAATCAAGAGGATTCTTTAGTATTTTTGGTAGATCAGCAGC
ACCACAAGCACCACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCTAA
AATAAAGAAAGCAACAACCAATGTATTAGTAGTCAATTTAGGTACAGTTGCAAAGGAATC
ATNTATTCAAACTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATAT
CAATGCATTAAAAGAGATAACATTAAATGATGGTAAAAAGCATCCAAATATTCCAACTGA
TGGTGGTTTCGATGGAAATAAAACTTGGAAATGTGAATTTTGTTATGAAGAGAATGAAAT
TGTCATTGATAAAGXXXXXXXXXX
Length of 5' end seq. 624
3' end seq. ID AFM666Z
3' end seq. 
>AFM666Z.Seq
XXXXXXXXXXTCAATTTAAATGATGGTTTCAAAGAAATTCTTAGTTTACCTACTTTAGCA
ACAAATGTATCCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTAGTGACTTTGATAAT
AATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATGTAAATCAAGACACA
ACAATTTCATTTGAATATGGTGTTAGATCCTCTAAATTAATTGATAAATCTTTGAAATCA
ATACCATTCCAATTACAAATCTTTTATACAACACTCACTGGTAAGAAATGTGTAAGAATG
ATCACTCAAACTCAAGAGATTACAACAAGCTCTGATTTGGCTGAAGAACATGCAAACATC
GAGGCATTGGGTATTAATATGGTTCAAACCTCTACAAAGATTGCTTCATCAGGTGATTAT
GAAAAATCTCGTGCTAAAAATTATTCACATGCTGGACTTATGCAAAAGGTAATGATGAAG
AAACAAAAGGCTACTAAAGTCGATTCAGATGAAATCGATTCAATGTCAAATTATATGCAA
CAAGCTCAAGATATTGAAACTCAACTATCAAATACTGTTTCAAATGAAAAGAGTTATAAT
TCAAGTGGTGATAGATTAAAATCACGTCAACAAAATCGCGATGATGCAACTGCTAAT
Length of 3' end seq. 657
Connected seq. ID AFM666P
Connected seq. 
>AFM666P.Seq
ATAAAATATTTTAATAAATAAAAAAATTAAACAAATAAATAAAAACAAATAAAAATAAAT
ACAAAAAATGAATTGTGGTTCAAAATATACTTTTGTTCAAGATGATGAAGAGGAAGAATT
TGTTGTTGATAGCAATATTTTCTTTCAAGGTGCTCAACCTCAACAACCTCAACAACCTCA
ACAACCTCAACAACCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAATCAAGAGGATTCTTTAGTATTTTTGGTAGATCAGCAGC
ACCACAAGCACCACCACCAGCACCAATGAATAATCGTGCACCAAATCAACTTAAAGCTAA
AATAAAGAAAGCAACAACCAATGTATTAGTAGTCAATTTAGGTACAGTTGCAAAGGAATC
ATNTATTCAAACTGGTGATGGTTACTTTTGTAAAAAATGTAATTGTGGTTTCAGCAATAT
CAATGCATTAAAAGAGATAACATTAAATGATGGTAAAAAGCATCCAAATATTCCAACTGA
TGGTGGTTTCGATGGAAATAAAACTTGGAAATGTGAATTTTGTTATGAAGAGAATGAAAT
TGTCATTGATAAAG----------TCAATTTAAATGATGGTTTCAAAGAAATTCTTAGTT
TACCTACTTTAGCAACAAATGTATCCGTTAAGATATTCCTCCATAAAGGTCTTTACGTTA
GTGACTTTGATAATAATAATAATACTGAAAAGAGTTTTGTTGAAAGAGTGATTGGTAATG
TAAATCAAGACACAACAATTTCATTTGAATATGGTGTTAGATCCTCTAAATTAATTGATA
AATCTTTGAAATCAATACCATTCCAATTACAAATCTTTTATACAACACTCACTGGTAAGA
AATGTGTAAGAATGATCACTCAAACTCAAGAGATTACAACAAGCTCTGATTTGGCTGAAG
AACATGCAAACATCGAGGCATTGGGTATTAATATGGTTCAAACCTCTACAAAGATTGCTT
CATCAGGTGATTATGAAAAATCTCGTGCTAAAAATTATTCACATGCTGGACTTATGCAAA
AGGTAATGATGAAGAAACAAAAGGCTACTAAAGTCGATTCAGATGAAATCGATTCAATGT
CAAATTATATGCAACAAGCTCAAGATATTGAAACTCAACTATCAAATACTGTTTCAAATG
AAAAGAGTTATAATTCAAGTGGTGATAGATTAAAATCACGTCAACAAAATCGCGATGATG
CAACTGCTAAT
Length of connected seq. 1261
Full length Seq ID -
Full length Seq. -
Length of full length seq. -