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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI330
Library VF
(Link to library)
Clone ID VFI330
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16173-1
Original site URL
Representative seq. ID VFI330P
(Link to Original site)
Representative DNA sequence 
>VFI330 (VFI330Q) /CSM/VF/VFI3-B/VFI330Q.Seq.d/
TGGAAAAAAGAACAGATAGTCTCCACCAAACGATATTTATATACATCCAATATATTTTTA
TATATTGAATTAAAATTTTAAAAAAAGAATGTCAAACAAGGTATTAATGATTGATGGTGA
TCGTATCAGTGGTAATGAAGTTAGAGCACAAAATGTTTTAGCAGTTACAGCAATTGCAAA
TATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAATTGATAATATTGG
ATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGATATAGAACATCC
AGCAGCAAAGATTTTAGTACAATTATCAGAATTGCAAGATCAAGAAGTTGGTGATGGTAC
AACTACAGTTGTAATTTTAGCAGCAGAATTATTGAAACGTGCCAATGAATTGGTAGCACG
TAAAGTACATCCAACAGTTATTATTAGTGGTTTTAGATTAGCATGTACAGAAGCAATCAA
ATATATCAACGAAACATTAGCAGTTAAAGTTGAAACCTTACCAAAGGATTTCATTGTAAA
CATTGCCAAGACATCAATGTCATCAAAGACCATCAATGACGATAGTGATTTCTTTTCAAA
GATTGTCATTGAGXXXXXXXXXXAGATAGAGAGAATGACATTGTAAAGGNAACGTATCTC
ACTTATCATTAAATCTGGTGCAAATGTTGTACTCACCACCAAAGGTATCGATGATTTATG
TTTGAAATACTTTGTTGAAGCTGGTTGTATGGCCGTTCGTCGTTGTAAAAAAGAAGATCT
TAAACGTATCGCCAAATCATGTGGTGGTACAGTCTTAATCACACTTGCAAATCTCGAGGG
TGAAGAATCATTTGATACCACCGCCTTGGGTATTGCCGATGAAGTTGTTCAAGATAGATT
GGCCGATGATGAATTAATCATTGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCT
TCGTGGTGCCAATGAATTAATGTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTG
TATCGTAAAGAGAACTTTAGAATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATC
TGCCCTCTCTATCTATCTCGATAATATTGCCAAAATCAAATGTATCAAATTTGCAACTGA
AAGCGCTATCACCATCCTTCGTATCGATGATAAAATCACTCTTAATCCAAGAGANCA
sequence update 2001.11.22
Translated Amino Acid sequence 
gkknr*sppndiyihpiyfyiln*NFKKRMSNKVLMIDGDRISGNEVRAQNVLAVTAIAN
IVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGT
TTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVN
IAKTSMSSKTINDDSDFFSKIVIE---

---DRENDIVKXTYLTYH*iwckccthhqryr*fmfeilc*swlygrssl*krrs*tyrq
imwwyslnhtcksrg*rii*yhrlgycr*scsr*igr**inhcqklk*eisfnhsswcq*
invg*ngtfhs*lslyrkenfriwnhcsrwwcs*icplylsr*ycqnqmyqicn*kryhh
psyr**nhs*skrx
Translated Amino Acid sequence (All Frames) 
Frame A:
wkkeqivstkrylytsniflyielkf*kknvkqgind*w*syqw**s*stkcfssysnck
ys*niiwtnwfr*nvn**ywinccyq*wcnhftkd*yrtssskdfstiiriarsrsw*wy
nyscnfssriietcq*igst*stsnsyy*wf*ismyrsnqiyqrniss*s*nltkgfhck
hcqdinvikdhq*r**flfkdch*---

---r*re*hckgnvshlslnlvqmlysppkvsmiyv*ntllklvvwpfvvvkkkilnvsp
nhvvvqs*shlqisrvknhlipppwvlpmklfkidwpmmn*slsktqirnqlqsffvvpm
n*cwmkwnvpfmtlsvs*rel*nleplfqvvvqlnlpslsisiilpksnvsnlqlkalsp
sfvsmikslliqex

Frame B:
gkknr*sppndiyihpiyfyiln*NFKKRMSNKVLMIDGDRISGNEVRAQNVLAVTAIAN
IVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGT
TTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDFIVN
IAKTSMSSKTINDDSDFFSKIVIE---

---DRENDIVKXTYLTYH*iwckccthhqryr*fmfeilc*swlygrssl*krrs*tyrq
imwwyslnhtcksrg*rii*yhrlgycr*scsr*igr**inhcqklk*eisfnhsswcq*
invg*ngtfhs*lslyrkenfriwnhcsrwwcs*icplylsr*ycqnqmyqicn*kryhh
psyr**nhs*skrx

Frame C:
ekrtdslhqtifiyiqyifiy*ikilkkecqtry**lmvivsvvmklehkmf*qlqqlqi
*lkhhldqlv*ikc*liildqlllpmmvqpfykrli*niqqqrf*ynyqnckikklvmvq
lql*f*qqny*nvpmnw*hvkyiqqlllvvld*hvqkqsnistkh*qlklkpyqrisl*t
lprhqchqrpsmtivisfqrlsl---

---iermtl*rxrisliiksganvvlttkgiddlclkyfveagcmavrrckkedlkriak
scggtvlitlanlegeesfdttalgiadevvqdrladdeliivknsnkksasiilrgane
lmldemersihdslcivkrtlesgtivpgggavesalsiyldniakikcikfatesaiti
lriddkitlnprx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI330 (VFI330Q) /CSM/VF/VFI3-B/VFI330Q.Seq.d/                       2260   0.0
VFF578 (VFF578Q) /CSM/VF/VFF5-D/VFF578Q.Seq.d/                       1148   0.0
AHI886 (AHI886Q) /CSM/AH/AHI8-D/AHI886Q.Seq.d/                       1140   0.0
FC-AG03 (FC-AG03Q) /CSM/FC/FC-AG/FC-AG03Q.Seq.d/                     1126   0.0
FC-116 (FC-116Q) /CSM/CG/CG-FC/FC-116Q.Seq.d/                        1126   0.0
AFD439 (AFD439Q) /CSM/AF/AFD4-B/AFD439Q.Seq.d/                       1126   0.0
VFD589 (VFD589Q) /CSM/VF/VFD5-D/VFD589Q.Seq.d/                       1124   0.0
CFH434 (CFH434Q) /CSM/CF/CFH4-B/CFH434Q.Seq.d/                       1104   0.0
AFF451 (AFF451Q) /CSM/AF/AFF4-C/AFF451Q.Seq.d/                        934   0.0
SSI735 (SSI735Q) /CSM/SS/SSI7-B/SSI735Q.Seq.d/                        910   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB008158|AB008158.1 Dictyostelium discoideum DdTcp-1 mRNA for t-complex polypeptide 1 homologue, complete cds.  1045   0.0    3
AX488977|AX488977.1 Sequence 6277 from Patent WO02053728.          56   2e-16  5
AZ530054|AZ530054.1 ENTDW96TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    66   4e-16  3
AZ526360|AZ526360.1 254PbF04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    70   6e-13  2
AZ522254|AZ522254.1 204PbE04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    68   2e-12  2
BF298951|BF298951.1 068PbG10 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    68   2e-12  2
BF299139|BF299139.1 069PbF12 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    68   2e-12  2
AL437502|AL437502.1 T3 end of clone BC0AA009G02 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    48   5e-10  4
AF143494|AF143494.1 Xenopus laevis t-complex polypeptide 1 (TCP1) mRNA, complete cds.    48   1e-08  5
U43123|U43123.1 Naegleria fowleri T-complex polypeptide homolog mRNA, partial cds.    40   4e-08  4
dna update 2004. 1.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB008158_1(AB008158|pid:none) Dictyostelium discoideum DdTcp-1 m...   332   2e-89
AF442545_1(AF442545|pid:none) Physarum polycephalum CCT chaperon...   248   4e-64
AC152752_1(AC152752|pid:none) Medicago truncatula clone mth2-89c...   236   1e-60
AP000383_4(AP000383|pid:none) Arabidopsis thaliana genomic DNA, ...   230   8e-59
BT002052_1(BT002052|pid:none) Arabidopsis thaliana t-complex pol...   230   8e-59
EU965648_1(EU965648|pid:none) Zea mays clone 287725 T-complex pr...   229   2e-58
(P12612) RecName: Full=T-complex protein 1 subunit alpha;       ...   227   7e-58
AP007161_168(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...   227   7e-58
CU928173_390(CU928173|pid:none) Zygosaccharomyces rouxii strain ...   227   7e-58
M21160_1(M21160|pid:none) Yeast (S.cerevisiae) T complex protein...   227   7e-58
protein update 2009. 6.21
PSORT 

 psg: 0.57  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VFI330 is cyt
5' end seq. ID VFI330F
5' end seq. 
>VFI330F.Seq
TGGAAAAAAGAACAGATAGTCTCCACCAAACGATATTTATATACATCCAATATATTTTTA
TATATTGAATTAAAATTTTAAAAAAAGAATGTCAAACAAGGTATTAATGATTGATGGTGA
TCGTATCAGTGGTAATGAAGTTAGAGCACAAAATGTTTTAGCAGTTACAGCAATTGCAAA
TATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAATTGATAATATTGG
ATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGATATAGAACATCC
AGCAGCAAAGATTTTAGTACAATTATCAGAATTGCAAGATCAAGAAGTTGGTGATGGTAC
AACTACAGTTGTAATTTTAGCAGCAGAATTATTGAAACGTGCCAATGAATTGGTAGCACG
TAAAGTACATCCAACAGTTATTATTAGTGGTTTTAGATTAGCATGTACAGAAGCAATCAA
ATATATCAACGAAACATTAGCAGTTAAAGTTGAAACCTTACCAAAGGATTTCATTGTAAA
CATTGCCAAGACATCAATGTCATCAAAGACCATCAATGACGATAGTGATTTCTTTTCAAA
GATTGTCATTGAGNNNNNNNNNN
Length of 5' end seq. 623
3' end seq. ID VFI330Z
3' end seq. 
>VFI330Z.Seq
NNNNNNNNNNAGATAGAGAGAATGACATTGTAAAGGNAACGTATCTCACTTATCATTAAA
TCTGGTGCAAATGTTGTACTCACCACCAAAGGTATCGATGATTTATGTTTGAAATACTTT
GTTGAAGCTGGTTGTATGGCCGTTCGTCGTTGTAAAAAAGAAGATCTTAAACGTATCGCC
AAATCATGTGGTGGTACAGTCTTAATCACACTTGCAAATCTCGAGGGTGAAGAATCATTT
GATACCACCGCCTTGGGTATTGCCGATGAAGTTGTTCAAGATAGATTGGCCGATGATGAA
TTAATCATTGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCTTCGTGGTGCCAAT
GAATTAATGTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTGTATCGTAAAGAGA
ACTTTAGAATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATCTGCCCTCTCTATC
TATCTCGATAATATTGCCAAAATCAAATGTATCAAATTTGCAACTGAAAGCGCTATCACC
ATCCTTCGTATCGATGATAAAATCACTCTTAATCCAAGAGANCA
Length of 3' end seq. 584
Connected seq. ID VFI330P
Connected seq. 
>VFI330P.Seq
TGGAAAAAAGAACAGATAGTCTCCACCAAACGATATTTATATACATCCAATATATTTTTA
TATATTGAATTAAAATTTTAAAAAAAGAATGTCAAACAAGGTATTAATGATTGATGGTGA
TCGTATCAGTGGTAATGAAGTTAGAGCACAAAATGTTTTAGCAGTTACAGCAATTGCAAA
TATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAATTGATAATATTGG
ATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGATATAGAACATCC
AGCAGCAAAGATTTTAGTACAATTATCAGAATTGCAAGATCAAGAAGTTGGTGATGGTAC
AACTACAGTTGTAATTTTAGCAGCAGAATTATTGAAACGTGCCAATGAATTGGTAGCACG
TAAAGTACATCCAACAGTTATTATTAGTGGTTTTAGATTAGCATGTACAGAAGCAATCAA
ATATATCAACGAAACATTAGCAGTTAAAGTTGAAACCTTACCAAAGGATTTCATTGTAAA
CATTGCCAAGACATCAATGTCATCAAAGACCATCAATGACGATAGTGATTTCTTTTCAAA
GATTGTCATTGAG----------AGATAGAGAGAATGACATTGTAAAGGNAACGTATCTC
ACTTATCATTAAATCTGGTGCAAATGTTGTACTCACCACCAAAGGTATCGATGATTTATG
TTTGAAATACTTTGTTGAAGCTGGTTGTATGGCCGTTCGTCGTTGTAAAAAAGAAGATCT
TAAACGTATCGCCAAATCATGTGGTGGTACAGTCTTAATCACACTTGCAAATCTCGAGGG
TGAAGAATCATTTGATACCACCGCCTTGGGTATTGCCGATGAAGTTGTTCAAGATAGATT
GGCCGATGATGAATTAATCATTGTCAAAAACTCAAATAAGAAATCAGCTTCAATCATTCT
TCGTGGTGCCAATGAATTAATGTTGGATGAAATGGAACGTTCCATTCATGACTCTCTCTG
TATCGTAAAGAGAACTTTAGAATCTGGAACCATTGTTCCAGGTGGTGGTGCAGTTGAATC
TGCCCTCTCTATCTATCTCGATAATATTGCCAAAATCAAATGTATCAAATTTGCAACTGA
AAGCGCTATCACCATCCTTCGTATCGATGATAAAATCACTCTTAATCCAAGAGANCA
Length of connected seq. 1187
Full length Seq ID -
Full length Seq. -
Length of full length seq. -