VFI285
Library VF
(Link to library)
Clone ID VFI285
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16276-1|Contig-U16494-1
Original site URL
Representative seq. ID VFI285P
(Link to Original site)
Representative DNA sequence
>VFI285 (VFI285Q) /CSM/VF/VFI2-D/VFI285Q.Seq.d/
AGTCCACCCTATTTCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGG
CAAAAAGCAAAAGCAAAACAGACCAGTCCCACATTGGATTCGTTTAAGAACTGATAACAC
CATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCC
TCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTG
GACGTTTAACAAAGAAAAAAAAAAXXXXXXXXXXTGAACCAACTTTCCGTTCCCCATACG
TTAACGTCAACAGATGGTTCACCACCTGTATCAACCAACCAAACTTCAAAGCTGTCATTG
GTGAATTTGCTCTCTGTGAAAAGATGATGGTCTACGTTGCTCCAAAGAAGGAAGTCAAAG
AAGAAAAACCAAAAGCTGCCCCAAAGAAGGAAGTCAAAGAAGACGCTGGTGACGATGAAG
TCGATGAAAAACCAAAAAAGAAAAACCCATTAGATGAATTAGCTCCATCAACCTTTGTTT
TGGATGAATTCAAACGTACCTACTCCAACAATGAAGTCTCCATGTCCATTCCATGGTTCT
TTGAACACTTTGACAAGGAAGGTTTCTCTGTCTACCAATGTACCTACCAATACAATCACG
AATT
sequence update 2001.11.22
Translated Amino Acid sequence
vhpiskmpsnktlkikkilgkkqkqnrpvphwirlrtdntirynnkrrhwrrtklgi*TP
QCKLIGTYRSLYILIKLIFWTFNKEKK---

---EPTFRSPYVNVNRWFTTCINQPNFKAVIGEFALCEKMMVYVAPKKEVKEEKPKAAPK
KEVKEDAGDDEVDEKPKKKNPLDELAPSTFVLDEFKRTYSNNEVSMSIPWFFEHFDKEGF
SVYQCTYQYNHE


Translated Amino Acid sequence (All Frames)
Frame A:
sppyfqnaiq*nikn*kdfrqkakakqtsptldsfkn**hhqiq*qt*tletykawylna
svqaywnisiiiyfnkidlldv*qrkkk---

---*tnfpfpir*rqqmvhhlyqptklqschw*icsl*kddglrcskegsqrrktkscpk
egsqrrrw*r*sr*ktkkekpir*issinlcfg*iqtyllqq*slhvhsmvl*tl*qgrf
lclpmylpiqsri

Frame B:
vhpiskmpsnktlkikkilgkkqkqnrpvphwirlrtdntirynnkrrhwrrtklgi*TP
QCKLIGTYRSLYILIKLIFWTFNKEKK---

---EPTFRSPYVNVNRWFTTCINQPNFKAVIGEFALCEKMMVYVAPKKEVKEEKPKAAPK
KEVKEDAGDDEVDEKPKKKNPLDELAPSTFVLDEFKRTYSNNEVSMSIPWFFEHFDKEGF
SVYQCTYQYNHE

Frame C:
stlfpkchpikh*klkrf*aksksktdqshigfv*elitpsdtitnvdigdvqslvskrl
sasllehidhyif**n*sfgrltkkkk---

---nqlsvphtltstdgsppvstnqtsklslvnllsvkr*wstllqrrkskkknqklpqr
rkskktlvtmksmknqkrkth*mn*lhqplfwmnsnvptptmkspcpfhgslntltrkvs
lstnvptntitn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN153 (VFN153Q) /CSM/VF/VFN1-C/VFN153Q.Seq.d/ 420 e-116
VFK112 (VFK112Q) /CSM/VF/VFK1-A/VFK112Q.Seq.d/ 420 e-116
VFJ212 (VFJ212Q) /CSM/VF/VFJ2-A/VFJ212Q.Seq.d/ 420 e-116
VFI285 (VFI285Q) /CSM/VF/VFI2-D/VFI285Q.Seq.d/ 420 e-116
VFF895 (VFF895Q) /CSM/VF/VFF8-D/VFF895Q.Seq.d/ 420 e-116
VFF622 (VFF622Q) /CSM/VF/VFF6-A/VFF622Q.Seq.d/ 420 e-116
VFE170 (VFE170Q) /CSM/VF/VFE1-C/VFE170Q.Seq.d/ 420 e-116
VFD517 (VFD517Q) /CSM/VF/VFD5-A/VFD517Q.Seq.d/ 420 e-116
VFD134 (VFD134Q) /CSM/VF/VFD1-B/VFD134Q.Seq.d/ 420 e-116
VFB836 (VFB836Q) /CSM/VF/VFB8-B/VFB836Q.Seq.d/ 420 e-116

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX348543|AX348543.1 Sequence 1 from Patent WO0202807. 48 0.16 1
AX344154|AX344154.1 Sequence 1 from Patent WO0200926. 48 0.16 1
AX251033|AX251033.1 Sequence 1 from Patent WO0168912. 48 0.16 1
AI843288|AI843288.1 UI-M-AO1-aei-e-07-0-UI.s1 NIH_BMAP_MPG_N Mus musculus cDNA clone UI-M-AO1-aei-e-07-0-UI 3', mRNA sequence. 34 0.46 2
BU835483|BU835483.1 T074E04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence. 46 0.64 1
AI163029|AI163029.1 A029P77U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequence. 46 0.64 1
BU823159|BU823159.1 UB48DPF11 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence. 46 0.64 1
BU828329|BU828329.1 K021P03P Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence. 46 0.64 1
CB833332|CB833332.1 R01F08 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence. 46 0.64 1
BU868563|BU868563.1 M117D06 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence. 46 0.64 1
dna update 2004. 3.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ680350_1(DQ680350|pid:none) Dolomedes tenebrosus elongation fa... 112 1e-23
EF070468_1(EF070468|pid:none) Maconellicoccus hirsutus clone WHM... 111 2e-23
AB246880_1(AB246880|pid:none) Lethenteron japonicum EEF1G mRNA f... 110 3e-23
BC170045_1(BC170045|pid:none) Xenopus laevis elongation factor 1... 108 1e-22
BC084224_1(BC084224|pid:none) Xenopus laevis cDNA clone MGC:8088... 108 1e-22
(P29694) RecName: Full=Elongation factor 1-gamma; Short... 107 2e-22
(Q90YC0) RecName: Full=Elongation factor 1-gamma; Short... 107 2e-22
(A2Q127) RecName: Full=Elongation factor 1-gamma; Short... 107 3e-22
AF119850_1(AF119850|pid:none) Homo sapiens PRO1608 mRNA, complet... 107 3e-22
BC023495_1(BC023495|pid:none) Mus musculus eukaryotic translatio... 107 3e-22
protein update 2009. 6.21
PSORT

psg: 0.81 gvh: 0.39 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.03
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VFI285 is nuc

5' end seq. ID VFI285F
5' end seq.
>VFI285F.Seq
AGTCCACCCTATTTCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGG
CAAAAAGCAAAAGCAAAACAGACCAGTCCCACATTGGATTCGTTTAAGAACTGATAACAC
CATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCC
TCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTG
GACGTTTAACAAAGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 274
3' end seq. ID VFI285Z
3' end seq.
>VFI285Z.Seq
NNNNNNNNNNTGAACCAACTTTCCGTTCCCCATACGTTAACGTCAACAGATGGTTCACCA
CCTGTATCAACCAACCAAACTTCAAAGCTGTCATTGGTGAATTTGCTCTCTGTGAAAAGA
TGATGGTCTACGTTGCTCCAAAGAAGGAAGTCAAAGAAGAAAAACCAAAAGCTGCCCCAA
AGAAGGAAGTCAAAGAAGACGCTGGTGACGATGAAGTCGATGAAAAACCAAAAAAGAAAA
ACCCATTAGATGAATTAGCTCCATCAACCTTTGTTTTGGATGAATTCAAACGTACCTACT
CCAACAATGAAGTCTCCATGTCCATTCCATGGTTCTTTGAACACTTTGACAAGGAAGGTT
TCTCTGTCTACCAATGTACCTACCAATACAATCACGAATT
Length of 3' end seq. 400
Connected seq. ID VFI285P
Connected seq.
>VFI285P.Seq
AGTCCACCCTATTTCCAAAATGCCATCCAATAAAACATTAAAAATTAAAAAGATTTTAGG
CAAAAAGCAAAAGCAAAACAGACCAGTCCCACATTGGATTCGTTTAAGAACTGATAACAC
CATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCC
TCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTGATCTTTTG
GACGTTTAACAAAGAAAAAAAAAA----------TGAACCAACTTTCCGTTCCCCATACG
TTAACGTCAACAGATGGTTCACCACCTGTATCAACCAACCAAACTTCAAAGCTGTCATTG
GTGAATTTGCTCTCTGTGAAAAGATGATGGTCTACGTTGCTCCAAAGAAGGAAGTCAAAG
AAGAAAAACCAAAAGCTGCCCCAAAGAAGGAAGTCAAAGAAGACGCTGGTGACGATGAAG
TCGATGAAAAACCAAAAAAGAAAAACCCATTAGATGAATTAGCTCCATCAACCTTTGTTT
TGGATGAATTCAAACGTACCTACTCCAACAATGAAGTCTCCATGTCCATTCCATGGTTCT
TTGAACACTTTGACAAGGAAGGTTTCTCTGTCTACCAATGTACCTACCAATACAATCACG
AATT
Length of connected seq. 654
Full length Seq ID -
Full length Seq. -
Length of full length seq. -