VFI274
Library VF
(Link to library)
Clone ID VFI274
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16299-1
Original site URL
Representative seq. ID VFI274P
(Link to Original site)
Representative DNA sequence
>VFI274 (VFI274Q) /CSM/VF/VFI2-D/VFI274Q.Seq.d/
TATTTTTAATAAAACTTTTTGTAACATAAAACATACAAAATGTCAAAAAATTCAGGTTTA
CCATCATTCGCTTCAACTGAAGCTGATAATTCACAAGGTTTTGTATTATCAGTATCAGGT
CCAGTCGTAATTGCTAATCAATTAGCTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGT
CACAATCAATTGGTTGGTGAAATTATTAGATTAGAAGAAGATACTGCCACAATTCAAGTT
TACGAAGAAACTTCTGGTTTAACTGTTGGTGATCCAGTATTAAGAACTCATAAACCATTA
ACAGTTGAATTAGGTCCAGGTATTATGAATAATATTTTTGATGGTATTCAACGTCCATTA
AATGCAATTGCAGAGATTACAAAAGGTATTTATATTCCAAGAGGTATTAATACTCCATCA
TTAAATAGAACTATTAAATGGCCATATCAACCAGATACCAAATTAAAAGTTGGTGACAAT
GTTAGTGGTGGTGATATTTTTGGTCAAGTTGTTGAAAATAATTXXXXXXXXXXTGCTGAT
CCAGTCACTGCTGCCACTTTAGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTA
GCACAACGTAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAA
GCTCTTGATACTCATTATGATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCC
AAGGAAATTCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGAT
TCTTTAGGTGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTC
CTTCAACAAAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGG
ATGTTAAAGAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACC
GCTGATAATAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGA
ATTACTTCAATGAAATTCCAAGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTTC
TCAACTCTCAATGAAGATATCATTACTGCTTTCAGAAACTTTAGNATTTAGTTTAAAATA
AANATATTAATAAAAAATAATATAAATATATAA
sequence update 2001.11.22
Translated Amino Acid sequence
yf**nfl*HKTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVG
HNQLVGEIIRLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPL
NAIAEITKGIYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENN---

---ADPVTAATLGIVQVFWGLDKKLAQRKHFPSINWLISFSKYMQALDTHYDQMDPEFVP
LRTRAKEILQMEEDLSEIVQLVGQDSLGESEKITIEVARIIRDDFLQQNGFSPYDKCCPF
FKTVWMLKNMMTFYNLAQKAVESSTADNKVTWNQIKNELKEIIHRITSMKFQDPTDGEQT
LTAHFSTLNEDIITAFRNFXI*fkixiliknnini*


Translated Amino Acid sequence (All Frames)
Frame A:
yf**nfl*HKTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVG
HNQLVGEIIRLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPL
NAIAEITKGIYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENN---

---c*sshcchfryrpsilgfr*kistt*tfpihqlvnfflqiyass*ysl*sngsrirs
tpyqsqgnssngrrsl*nrpigrsrffr*i*kdyh*srsyys**fpstkwflsir*mlsi
lqdrldvkeyddflqfstksc*ikyr***sylesn*k*ikrnhsqnyfneiprsn*r*tn
fncsflnsq*ryhycfqkl*xlv*nkxinkk*ykyi

Frame B:
ifnktfcnikhtkcqkiqvyhhslqlkliihkvlyyqyqvqs*llin*lvllctswfv*v
tinwlvklld*kkilpqfkftkkllv*llviqy*elinh*qln*vqvl*iiflmvfnvh*
mqlqrlqkvfifqevlilhh*iellnghinqipn*klvtmlvvviflvkllkii---

---ADPVTAATLGIVQVFWGLDKKLAQRKHFPSINWLISFSKYMQALDTHYDQMDPEFVP
LRTRAKEILQMEEDLSEIVQLVGQDSLGESEKITIEVARIIRDDFLQQNGFSPYDKCCPF
FKTVWMLKNMMTFYNLAQKAVESSTADNKVTWNQIKNELKEIIHRITSMKFQDPTDGEQT
LTAHFSTLNEDIITAFRNFXI*fkixiliknnini*

Frame C:
fliklfvt*niqnvkkfrftiirfn*s**ftrfciisirssrnc*siswccyvrvgscrs
qsigw*ny*irrrychnsslrrnfwfncw*ssikns*tins*irsryye*yf*wystsik
cncrdykrylyskry*ysiik*ny*maistryqiksw*qc*ww*yfwssc*k*---

---liqsllpl*vsskysgv*ikn*hnvnishpsig*flspnickllilimikwiqnsfh
svpeprkffkwkkislkssnwsvkil*vnlkrlplkslvlfvmisfnkmvslhtinvvhs
srpfgc*ri**lsti*hkkllnqvpliikllgiklkmn*kksftellq*nskiqltvnkl
*llisqlsmkislllsetlxfslk*xy**kii*iy

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI274 (VFI274Q) /CSM/VF/VFI2-D/VFI274Q.Seq.d/ 2181 0.0
VHK790 (VHK790Q) /CSM/VH/VHK7-D/VHK790Q.Seq.d/ 1183 0.0
VHI454 (VHI454Q) /CSM/VH/VHI4-C/VHI454Q.Seq.d/ 1183 0.0
VFM694 (VFM694Q) /CSM/VF/VFM6-D/VFM694Q.Seq.d/ 1183 0.0
VFL661 (VFL661Q) /CSM/VF/VFL6-C/VFL661Q.Seq.d/ 1183 0.0
VHP748 (VHP748Q) /CSM/VH/VHP7-B/VHP748Q.Seq.d/ 1176 0.0
VHN664 (VHN664Q) /CSM/VH/VHN6-C/VHN664Q.Seq.d/ 1176 0.0
VHN460 (VHN460Q) /CSM/VH/VHN4-C/VHN460Q.Seq.d/ 1174 0.0
VHM153 (VHM153Q) /CSM/VH/VHM1-C/VHM153Q.Seq.d/ 1174 0.0
VFK876 (VFK876Q) /CSM/VF/VFK8-D/VFK876Q.Seq.d/ 1174 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U49169|U49169.1 Dictyostelium discoideum V-ATPase A subunit (vatA) mRNA, complete cds. 1172 0.0 1
L43963|L43963.1 Dictyostelium discoideum vacuolar proton transporting ATPase subunit A mRNA, partial cds. 276 e-144 2
AB093510|AB093510.1 Saccharomyces exiguus VMA1-2 gene for vacuolar membrane ATPase subunit a precursor 2, partial cds, strain:IFO1128. 80 2e-32 5
AB093509|AB093509.1 Saccharomyces exiguus VMA1-1 gene for vacuolar membrane ATPase subunit a precursor 1, partial cds, strain:IFO1128. 74 6e-32 6
AB093511|AB093511.1 Saccharomyces unisporus VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO0316. 74 1e-28 4
M64984|M64984.1 Candida tropicalis open reading frame DNA sequence. 96 1e-27 6
BI772943|BI772943.1 kq08f06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence. 94 2e-26 3
AX109951|AX109951.1 Sequence 684 from Patent WO0123604. 96 1e-25 5
AB093506|AB093506.1 Kluyveromyces lactis VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO1267. 58 5e-24 7
AB093507|AB093507.1 Saccharomyces castellii VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO1992. 66 7e-20 5
dna update 2004. 1.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54647) RecName: Full=V-type proton ATPase catalytic subunit A;... 399 e-109
(P38607) Vacuolar ATP synthase catalytic subunit A, osteoclast i... 271 3e-71
A56807(A56807) H+-transporting two-sector ATPase (EC 3.6.3.14), ... 268 2e-70
AK152785_1(AK152785|pid:none) Mus musculus bone marrow macrophag... 267 5e-70
AX407287_1(AX407287|pid:none) Sequence 58 from Patent WO0226984. 267 5e-70
(P31404) RecName: Full=V-type proton ATPase catalytic subunit A;... 267 6e-70
M80430_1(M80430|pid:none) Bovine vacuolar H+-ATPase A subunit mR... 267 6e-70
BC105145_1(BC105145|pid:none) Bos taurus ATPase, H+ transporting... 267 6e-70
(P31400) RecName: Full=V-type proton ATPase catalytic subunit A;... 266 1e-69
I50715(I50715) A2 isoform of vacuolar H+-ATPase subunit A - chic... 266 1e-69
protein update 2009. 6.21
PSORT

psg: 0.87 gvh: 0.58 alm: 0.38 top: 0.23 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
32.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VFI274 is exc

5' end seq. ID VFI274F
5' end seq.
>VFI274F.Seq
TATTTTTAATAAAACTTTTTGTAACATAAAACATACAAAATGTCAAAAAATTCAGGTTTA
CCATCATTCGCTTCAACTGAAGCTGATAATTCACAAGGTTTTGTATTATCAGTATCAGGT
CCAGTCGTAATTGCTAATCAATTAGCTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGT
CACAATCAATTGGTTGGTGAAATTATTAGATTAGAAGAAGATACTGCCACAATTCAAGTT
TACGAAGAAACTTCTGGTTTAACTGTTGGTGATCCAGTATTAAGAACTCATAAACCATTA
ACAGTTGAATTAGGTCCAGGTATTATGAATAATATTTTTGATGGTATTCAACGTCCATTA
AATGCAATTGCAGAGATTACAAAAGGTATTTATATTCCAAGAGGTATTAATACTCCATCA
TTAAATAGAACTATTAAATGGCCATATCAACCAGATACCAAATTAAAAGTTGGTGACAAT
GTTAGTGGTGGTGATATTTTTGGTCAAGTTGTTGAAAATAATTNNNNNNNNNN
Length of 5' end seq. 533
3' end seq. ID VFI274Z
3' end seq.
>VFI274Z.Seq
NNNNNNNNNNTGCTGATCCAGTCACTGCTGCCACTTTAGGTATCGTCCAAGTATTCTGGG
GTTTAGATAAAAAATTAGCACAACGTAAACATTTCCCATCCATCAATTGGTTAATTTCTT
TCTCCAAATATATGCAAGCTCTTGATACTCATTATGATCAAATGGATCCAGAATTCGTTC
CACTCCGTACCAGAGCCAAGGAAATTCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCC
AATTGGTCGGTCAAGATTCTTTAGGTGAATCTGAAAAGATTACCATTGAAGTCGCTCGTA
TTATTCGTGATGATTTCCTTCAACAAAATGGTTTCTCTCCATACGATAAATGTTGTCCAT
TCTTCAAGACCGTTTGGATGTTAAAGAATATGATGACTTTCTACAATTTAGCACAAAAAG
CTGTTGAATCAAGTACCGCTGATAATAAAGTTACTTGGAATCAAATTAAAAATGAATTAA
AAGAAATCATTCACAGAATTACTTCAATGAAATTCCAAGATCCAACTGACGGTGAACAAA
CTTTAACTGCTCATTTCTCAACTCTCAATGAAGATATCATTACTGCTTTCAGAAACTTTA
GNATTTAGTTTAAAATAAANATATTAATAAAAAATAATATAAATATATAA
Length of 3' end seq. 650
Connected seq. ID VFI274P
Connected seq.
>VFI274P.Seq
TATTTTTAATAAAACTTTTTGTAACATAAAACATACAAAATGTCAAAAAATTCAGGTTTA
CCATCATTCGCTTCAACTGAAGCTGATAATTCACAAGGTTTTGTATTATCAGTATCAGGT
CCAGTCGTAATTGCTAATCAATTAGCTGGTGCTGCTATGTACGAGTTGGTTCGTGTAGGT
CACAATCAATTGGTTGGTGAAATTATTAGATTAGAAGAAGATACTGCCACAATTCAAGTT
TACGAAGAAACTTCTGGTTTAACTGTTGGTGATCCAGTATTAAGAACTCATAAACCATTA
ACAGTTGAATTAGGTCCAGGTATTATGAATAATATTTTTGATGGTATTCAACGTCCATTA
AATGCAATTGCAGAGATTACAAAAGGTATTTATATTCCAAGAGGTATTAATACTCCATCA
TTAAATAGAACTATTAAATGGCCATATCAACCAGATACCAAATTAAAAGTTGGTGACAAT
GTTAGTGGTGGTGATATTTTTGGTCAAGTTGTTGAAAATAATT----------TGCTGAT
CCAGTCACTGCTGCCACTTTAGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTA
GCACAACGTAAACATTTCCCATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAA
GCTCTTGATACTCATTATGATCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCC
AAGGAAATTCTTCAAATGGAAGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGAT
TCTTTAGGTGAATCTGAAAAGATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTC
CTTCAACAAAATGGTTTCTCTCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGG
ATGTTAAAGAATATGATGACTTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACC
GCTGATAATAAAGTTACTTGGAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGA
ATTACTTCAATGAAATTCCAAGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTTC
TCAACTCTCAATGAAGATATCATTACTGCTTTCAGAAACTTTAGNATTTAGTTTAAAATA
AANATATTAATAAAAAATAATATAAATATATAA
Length of connected seq. 1163
Full length Seq ID -
Full length Seq. -
Length of full length seq. -