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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM657
Library AF
(Link to library)
Clone ID AFM657
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM657P
(Link to Original site)
Representative DNA sequence 
>AFM657 (AFM657Q) /CSM/AF/AFM6-C/AFM657Q.Seq.d/
AAATTTAAAAGATGCACTTGAAAACGCAACATTAGAACAAATCTATACAATTGCCTCAAA
AATTGAAATTCAAGATGAAAATAAAACTCATAAATTTTCACTTGGAGATGTTGAAGATTA
CAAAATTGGCTCTTCAGTTACACAGTATTCAAGACAATATAGAATTAAATTACCAGATGG
TAAAACACTTTGTTTAATTGATGCTCCAGGTGTCGGTGATCCACAAGGTACATTGCAAGA
TAATAAACATTTTGAGAATATCCTACACGAAATTTCATCATTAAAAAAGTTAAATGCAAT
TTGTATTTTAATGCGTCCAGATGAAACTAGAGCCACTGTTTTATTCAAATATTGTTAATC
AATTATTACTACATTTACATTCAAGTGCAAAAGATAATATTTTCTTTTGTTTCACTCATA
CAAGAGGTACAATGTATAAACCAGGTCCAACAAGAGCCATCCTAGAGGATCATTTAAAAA
AAATGAAAGATCAATCAGATATTGAAATAAATGCTAATGAAAAAACATTTTGTTTTGATA
ATGAATCTTTTAATTATTTAGCCGTTAAAAAATATAATGCTACTGCTGGTATTGAAACTA
ATTTTTCAGAAGATGGATGAGTTTGATTTXXXXXXXXXXGAGTACTTCCTTGTTTATGGT
TTGATCATCAAGTAGTTACTATCAAAGAAACACCTCAACTCAATCAATTACCAGGCACTG
ATAAAAAAACAATAGGTCAAAGAACAAAGAGTGAAATATTTAATGAGAGGGAGTTGTTAG
TTACAAAAATGGGAGAAAGAAAAATACAATTCCAAGAAGAATATGATACTATTAAGACTG
CAATTGTTGACTTTTCAGTATTCTTGTGGCACCATTCATTAATTAAATTTAATCGTTACT
ATGAAGATTATATCAACATGCAAATAAAGCAATTGGAAAATTCTGAGAACTCGCAAGAAT
TAATTCAAAAACTCAATGAACACTTAAGTGAATATAAAGCAAGTGTTGAAGAAATAAAAC
ATAATGTCCAAAATAATAAAGCATCTGTTAAGACTCAAAAAGAAATATTCGCTACATTTG
ATAAACTACTTACTTTACCAAATGTAGGCTATATCATCCAAAATCAAATTAAACTCAAAC
AGAGTAGTCATTACAAAAGTGAAGCTGTTGAAATTGATCTTTTCTCAAAAATGAAAAACA
AAACAAAACAAATAATCAAATAATTTATTCAAAGAATTTATTTTTCAATAAAATTTTCTT
TTTCAATAAAATTTTCTTTTTCAATAAGGTTGAATAATTTAAAAATAATAATAATAATTA
TAATAATAATAATTATAATAATAAAAATATAAAAATAAAAATTAAAATAAAACTTCAAAT
TATCTCAANAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
kfkrct*krnirtnlynclkn*nsr*k*ns*iftwrc*rlqnwlfsytvfkti*n*itrw
*ntlfn*csrcr*stryiar**tf*eyptrnfiikkvkcnlyfnasr*n*shcfiqilli
nyyyiyiqvqkiifsfvsliqevqcinqvqqeps*rii*kk*kinqilk*mlmkkhfvli
mnllii*PLKNIMLLLVLKLIFQKMDEFD---

---VLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQF
QEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSE
YKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVE
IDLFSKMKNKTKQIIK*fiqriyfsikfsfsikfsfsirlnnlkiiiiiiiiiiiiiki*
k*klk*nfklsqx
Translated Amino Acid sequence (All Frames) 
Frame A:
kfkrct*krnirtnlynclkn*nsr*k*ns*iftwrc*rlqnwlfsytvfkti*n*itrw
*ntlfn*csrcr*stryiar**tf*eyptrnfiikkvkcnlyfnasr*n*shcfiqilli
nyyyiyiqvqkiifsfvsliqevqcinqvqqeps*rii*kk*kinqilk*mlmkkhfvli
mnllii*PLKNIMLLLVLKLIFQKMDEFD---

---eyflvygliik*llskkhlnsinyqalikkq*vkeqrvkylmrgsc*lqkwekekyn
skknmillrlqlltfqyscgtih*lnlivtmkiistck*snwkilrtrkn*fknsmnt*v
nikqvlkk*nimskiikhllrlkkkyslhlinyllyqm*aisskiklnsnrvvitkvkll
klifsqk*ktkqnk*snnlfkefifq*nflfq*nflfq*g*ii*k****l****l***ky
knkn*nktsnylxk

Frame B:
nlkdalenatleqiytiaskieiqdenkthkfslgdvedykigssvtqysrqyriklpdg
ktlclidapgvgdpqgtlqdnkhfenilheisslkklnaicilmrpdetratvlfkyc*s
iittftfkckr*yfllfhsykrynv*trsnkshprgsfkknersiry*nkc**knilf**
*if*lfsr*ki*cycwy*n*ffrrwmsli---

---stslfmv*ssssyyqrntstqsitrh**knnrsknke*ni**egvvsykngrkknti
prri*yy*dcnc*lfsilvapfin*i*sll*rlyqhankaigkf*elarinsktq*tlk*
i*skc*rnkt*cpk**sic*dskrniryi**ttyftkcrlyhpksn*tqte*slqk*sc*
n*sflknekqnktnnqiiysknlffnkifffnkifffnkve*fknnnnnynnnnynnkni
kikikiklqiisxk

Frame C:
i*kmhlktqh*nksiqlpqklkfkmkiklinfhlemlkitklalqlhsiqdnielnyqmv
khfv*lmlqvsvihkvhckiinilrisytkfhh*ks*mqfvf*cvqmkleplfysnivnq
lllhlhssakdniffcfthtrgtmykpgptrailedhlkkmkdqsdieinanektfcfdn
esfnylavkkynatagietnfsedg*v*f---

---VLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQF
QEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSE
YKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVE
IDLFSKMKNKTKQIIK*fiqriyfsikfsfsikfsfsirlnnlkiiiiiiiiiiiiiki*
k*klk*nfklsqx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM657 (AFM657Q) /CSM/AF/AFM6-C/AFM657Q.Seq.d/                       2200   0.0
VHI763 (VHI763Q) /CSM/VH/VHI7-C/VHI763Q.Seq.d/                       1033   0.0
CHL240 (CHL240Q) /CSM/CH/CHL2-B/CHL240Q.Seq.d/                       1033   0.0
AHO711 (AHO711Q) /CSM/AH/AHO7-A/AHO711Q.Seq.d/                       1033   0.0
AHN442 (AHN442Q) /CSM/AH/AHN4-B/AHN442Q.Seq.d/                       1033   0.0
AHK709 (AHK709Q) /CSM/AH/AHK7-A/AHK709Q.Seq.d/                       1033   0.0
AHJ342 (AHJ342Q) /CSM/AH/AHJ3-B/AHJ342Q.Seq.d/                       1033   0.0
AHH544 (AHH544Q) /CSM/AH/AHH5-B/AHH544Q.Seq.d/                       1033   0.0
AHC420 (AHC420Q) /CSM/AH/AHC4-A/AHC420Q.Seq.d/                       1033   0.0
CHG290 (CHG290Q) /CSM/CH/CHG2-D/CHG290Q.Seq.d/                       1027   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329845) Dictyostelium discoideum cDNA clone:dda26a16, 5' ...   942   0.0    2
(BJ347229) Dictyostelium discoideum cDNA clone:dda26a16, 3' ...   904   0.0    3
(BJ353190) Dictyostelium discoideum cDNA clone:dda49d11, 3' ...   896   0.0    2
(BJ356353) Dictyostelium discoideum cDNA clone:dda60f03, 3' ...   896   0.0    2
(BJ349013) Dictyostelium discoideum cDNA clone:dda35h06, 3' ...   896   0.0    2
(BJ355496) Dictyostelium discoideum cDNA clone:dda57d12, 3' ...   896   0.0    2
(BJ382348) Dictyostelium discoideum cDNA clone:ddc44o10, 3' ...   896   0.0    2
(BJ352310) Dictyostelium discoideum cDNA clone:dda46g11, 3' ...   896   0.0    2
(BJ442046) Dictyostelium discoideum cDNA clone:ddv48n15, 3' ...   896   0.0    2
(BJ353946) Dictyostelium discoideum cDNA clone:dda52b03, 3' ...   896   0.0    2
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB120174_1(AB120174|pid:none) Dictyostelium discoideum DD8-14 mR...    88   1e-35
AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...    89   2e-34
BA000023_2271(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    45   0.006
BC046493_1(BC046493|pid:none) Mus musculus centrosomal protein 1...    42   0.050
T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele...    41   0.085
AL390354_21(AL390354|pid:none) Neurospora crassa DNA linkage gro...    41   0.085
T14265(T14265)golgin-245 - mouse                                       40   0.19
BC007485_1(BC007485|pid:none) Mus musculus golgi autoantigen, go...    40   0.19
BC053000_1(BC053000|pid:none) Mus musculus golgi autoantigen, go...    40   0.19
(Q92580) RecName: Full=Melanoma inhibitory activity protein 3; A...    39   0.32
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM657 is

5' end seq. ID AFM657F
5' end seq. 
>AFM657F.Seq
AAATTTAAAAGATGCACTTGAAAACGCAACATTAGAACAAATCTATACAATTGCCTCAAA
AATTGAAATTCAAGATGAAAATAAAACTCATAAATTTTCACTTGGAGATGTTGAAGATTA
CAAAATTGGCTCTTCAGTTACACAGTATTCAAGACAATATAGAATTAAATTACCAGATGG
TAAAACACTTTGTTTAATTGATGCTCCAGGTGTCGGTGATCCACAAGGTACATTGCAAGA
TAATAAACATTTTGAGAATATCCTACACGAAATTTCATCATTAAAAAAGTTAAATGCAAT
TTGTATTTTAATGCGTCCAGATGAAACTAGAGCCACTGTTTTATTCAAATATTGTTAATC
AATTATTACTACATTTACATTCAAGTGCAAAAGATAATATTTTCTTTTGTTTCACTCATA
CAAGAGGTACAATGTATAAACCAGGTCCAACAAGAGCCATCCTAGAGGATCATTTAAAAA
AAATGAAAGATCAATCAGATATTGAAATAAATGCTAATGAAAAAACATTTTGTTTTGATA
ATGAATCTTTTAATTATTTAGCCGTTAAAAAATATAATGCTACTGCTGGTATTGAAACTA
ATTTTTCAGAAGATGGATGAGTTTGATTTXXXXXXXXXX
Length of 5' end seq. 639
3' end seq. ID AFM657Z
3' end seq. 
>AFM657Z.Seq
XXXXXXXXXXGAGTACTTCCTTGTTTATGGTTTGATCATCAAGTAGTTACTATCAAAGAA
ACACCTCAACTCAATCAATTACCAGGCACTGATAAAAAAACAATAGGTCAAAGAACAAAG
AGTGAAATATTTAATGAGAGGGAGTTGTTAGTTACAAAAATGGGAGAAAGAAAAATACAA
TTCCAAGAAGAATATGATACTATTAAGACTGCAATTGTTGACTTTTCAGTATTCTTGTGG
CACCATTCATTAATTAAATTTAATCGTTACTATGAAGATTATATCAACATGCAAATAAAG
CAATTGGAAAATTCTGAGAACTCGCAAGAATTAATTCAAAAACTCAATGAACACTTAAGT
GAATATAAAGCAAGTGTTGAAGAAATAAAACATAATGTCCAAAATAATAAAGCATCTGTT
AAGACTCAAAAAGAAATATTCGCTACATTTGATAAACTACTTACTTTACCAAATGTAGGC
TATATCATCCAAAATCAAATTAAACTCAAACAGAGTAGTCATTACAAAAGTGAAGCTGTT
GAAATTGATCTTTTCTCAAAAATGAAAAACAAAACAAAACAAATAATCAAATAATTTATT
CAAAGAATTTATTTTTCAATAAAATTTTCTTTTTCAATAAAATTTTCTTTTTCAATAAGG
TTGAATAATTTAAAAATAATAATAATAATTATAATAATAATAATTATAATAATAAAAATA
TAAAAATAAAAATTAAAATAAAACTTCAAATTATCTCAANAAAA
Length of 3' end seq. 764
Connected seq. ID AFM657P
Connected seq. 
>AFM657P.Seq
AAATTTAAAAGATGCACTTGAAAACGCAACATTAGAACAAATCTATACAATTGCCTCAAA
AATTGAAATTCAAGATGAAAATAAAACTCATAAATTTTCACTTGGAGATGTTGAAGATTA
CAAAATTGGCTCTTCAGTTACACAGTATTCAAGACAATATAGAATTAAATTACCAGATGG
TAAAACACTTTGTTTAATTGATGCTCCAGGTGTCGGTGATCCACAAGGTACATTGCAAGA
TAATAAACATTTTGAGAATATCCTACACGAAATTTCATCATTAAAAAAGTTAAATGCAAT
TTGTATTTTAATGCGTCCAGATGAAACTAGAGCCACTGTTTTATTCAAATATTGTTAATC
AATTATTACTACATTTACATTCAAGTGCAAAAGATAATATTTTCTTTTGTTTCACTCATA
CAAGAGGTACAATGTATAAACCAGGTCCAACAAGAGCCATCCTAGAGGATCATTTAAAAA
AAATGAAAGATCAATCAGATATTGAAATAAATGCTAATGAAAAAACATTTTGTTTTGATA
ATGAATCTTTTAATTATTTAGCCGTTAAAAAATATAATGCTACTGCTGGTATTGAAACTA
ATTTTTCAGAAGATGGATGAGTTTGATTT----------GAGTACTTCCTTGTTTATGGT
TTGATCATCAAGTAGTTACTATCAAAGAAACACCTCAACTCAATCAATTACCAGGCACTG
ATAAAAAAACAATAGGTCAAAGAACAAAGAGTGAAATATTTAATGAGAGGGAGTTGTTAG
TTACAAAAATGGGAGAAAGAAAAATACAATTCCAAGAAGAATATGATACTATTAAGACTG
CAATTGTTGACTTTTCAGTATTCTTGTGGCACCATTCATTAATTAAATTTAATCGTTACT
ATGAAGATTATATCAACATGCAAATAAAGCAATTGGAAAATTCTGAGAACTCGCAAGAAT
TAATTCAAAAACTCAATGAACACTTAAGTGAATATAAAGCAAGTGTTGAAGAAATAAAAC
ATAATGTCCAAAATAATAAAGCATCTGTTAAGACTCAAAAAGAAATATTCGCTACATTTG
ATAAACTACTTACTTTACCAAATGTAGGCTATATCATCCAAAATCAAATTAAACTCAAAC
AGAGTAGTCATTACAAAAGTGAAGCTGTTGAAATTGATCTTTTCTCAAAAATGAAAAACA
AAACAAAACAAATAATCAAATAATTTATTCAAAGAATTTATTTTTCAATAAAATTTTCTT
TTTCAATAAAATTTTCTTTTTCAATAAGGTTGAATAATTTAAAAATAATAATAATAATTA
TAATAATAATAATTATAATAATAAAAATATAAAAATAAAAATTAAAATAAAACTTCAAAT
TATCTCAANAAAA
Length of connected seq. 1383
Full length Seq ID -
Full length Seq. -
Length of full length seq. -