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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI263
Library VF
(Link to library)
Clone ID VFI263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16239-1
Original site URL
Representative seq. ID VFI263P
(Link to Original site)
Representative DNA sequence 
>VFI263 (VFI263Q) /CSM/VF/VFI2-C/VFI263Q.Seq.d/
AAATTTCCATTTTTTATTTATTGTAATTAAAAATTAATTAATAATAATCAAATATTATTA
TAATAAAAGATTGGTAAAAAACCATGTCAAAATTATTAATTTTATTGTTATTATCATTGG
TTGCTTCAATCTTTTCAACTCCATTGGATGATTATGTCAATGCTCCTGACGATACCTACA
AGTGGACATTAAATAATACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGA
CATCACAAACATGGATGGCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAA
TTTGTGTACCAAAAGGTGTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAA
ATGATAACTGGAAAGTACCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCAT
CTGGTTCAGTTAGTGTTGGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATG
ATGGTGTTCAAAGATTTGAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAA
ATACAAGTGAACCACTXXXXXXXXXXACAATGCCAATTTANGCAATTGCATCAAGTGATG
ATGAATTTTTCCTTCCANATTCACCNCAATTTTTTTGGAATAATTTAACAGCAACCCCAA
ANAAACATTTTANAATNGNACCAAANGNTGAACNCTNTTTAANGGGTCATCAAATTGANA
TCATTTTATCGATTGTTACATTTGTTANATTATTAATTACAAATCAACCNCGTCCAACTT
TTANATGGGANATTACCTACTNTGAANATTTAAANANTGGGACAATNGTTTTAACAGNAC
CANAAGGNGGNATCATTCCANANAAAGTTAAAGTTTGGNCAGCAGNAACTGAAAGNACAA
CCANAANAGATTTCCGNATCATCNCATGNATGGANATCNCCNAANGNATTCAATTCATCN
TTTGGGATCCNTNTGANATTACNCCNACNTCCNCTGGNGNANANTCNATCCCTTTANCAA
AACCNNANGCTGGNTGGANAGCNTTCTTCCNTGAAGCTGAANATTTANATGCTAAAAANT
CNANCGATGATGAANAAACNCTTAAATTC
sequence update 2001.11.22
Translated Amino Acid sequence 
isifyll*lkin***sniiiikdw*KTMSKLLILLLLSLVASIFSTPLDDYVNAPDDTYK
WTLNNTIEYETFTGYILELTSQTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSN
DNWKVPGSMDQTIEIVCLSSGSVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGN
TSEP---

---TMPIXAIASSDDEFFLPXSPQFFWNNLTATPXKHFXXXPXXEXXLXGHQIXIILSIV
TFVXLLITNQPRPTFXWXITYXEXLXXGTXVLTXPXGGIIPXKVKVWXAXTEXTTXXDFR
IIXXMXIXXXIQFIXWDPXXITPTSXGXXSIPLXKPXAGWXAFFXEAEXLXAKXSXDDEX
TLKF
Translated Amino Acid sequence (All Frames) 
Frame A:
kfpffiycn*klinnnqill**kigkkpcqny*fycyyhwllqsfqlhwmimsmlltipt
sgh*iiqlnmkllqvtf*s*hhkhgwlknqigqfgnigfqfvyqkvlqlqlhlymlmvvq
mitgkyqvqwikqlklfvfhlvqlvlv*lkfqinqsfsimmvfkdlkmisllilgdnf*e
iqvnh---

---TMPIXAIASSDDEFFLPXSPQFFWNNLTATPXKHFXXXPXXEXXLXGHQIXIILSIV
TFVXLLITNQPRPTFXWXITYXEXLXXGTXVLTXPXGGIIPXKVKVWXAXTEXTTXXDFR
IIXXMXIXXXIQFIXWDPXXITPTSXGXXSIPLXKPXAGWXAFFXEAEXLXAKXSXDDEX
TLKF

Frame B:
nfhflfivikn*liiikyyynkrlvknhvkiinfiviiigcfnlfnsig*lcqcs*rylq
vdik*yn*i*nfyrlhfrvditnmdg*kirlasletlgfnlctkrcynynyiyic*wwfk
**lestrfngsnn*nclsfiwfs*cwfnsnskstnhfq**wcski*r*srclyletifrk
yk*tt---

---qcqfxqlhqvmmnfsfxihxnffgii*qqpqxnilxxxqxxnxx*xviklxsfyrll
hllxy*lqinxvqllxgxlptxxi*xxgqxf*qxxkxxsfxxklkfgqqxlkxqpxxisx
sshxwxspxxfnssfgixxxlxxxplxxxxslxqnxxlxgxxssxklxixmlkxxxmmxk
xln

Frame C:
isifyll*lkin***sniiiikdw*KTMSKLLILLLLSLVASIFSTPLDDYVNAPDDTYK
WTLNNTIEYETFTGYILELTSQTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSN
DNWKVPGSMDQTIEIVCLSSGSVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGN
TSEP---

---nanlxncik***ifpsxftxifle*fnsnpkxtfxnxtkx*tlfxgssn*xhfidcy
icxiinykstxsnfxmgxyll*xfkxwdnxfnxtxrxxhsxxs*slxsxn*kxnxxrfpx
hxmxgxxxxxsihxlgsx*xyxxxxwxxxxpfxktxxwxxsxlp*s*xfxc*kxxr**xn
x*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI263 (VFI263Q) /CSM/VF/VFI2-C/VFI263Q.Seq.d/                       1560   0.0
VFO540 (VFO540Q) /CSM/VF/VFO5-B/VFO540Q.Seq.d/                        975   0.0
VFN732 (VFN732Q) /CSM/VF/VFN7-B/VFN732Q.Seq.d/                        975   0.0
VFN176 (VFN176Q) /CSM/VF/VFN1-D/VFN176Q.Seq.d/                        975   0.0
VFL666 (VFL666Q) /CSM/VF/VFL6-C/VFL666Q.Seq.d/                        975   0.0
VFL320 (VFL320Q) /CSM/VF/VFL3-A/VFL320Q.Seq.d/                        975   0.0
VFL194 (VFL194Q) /CSM/VF/VFL1-D/VFL194Q.Seq.d/                        975   0.0
VFK341 (VFK341Q) /CSM/VF/VFK3-B/VFK341Q.Seq.d/                        975   0.0
VFI702 (VFI702Q) /CSM/VF/VFI7-A/VFI702Q.Seq.d/                        975   0.0
VFI335 (VFI335Q) /CSM/VF/VFI3-B/VFI335Q.Seq.d/                        975   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    38   0.002  6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.010  14
AL929582|AL929582.10 Zebrafish DNA sequence from clone CH211-117M12.    36   0.011  2
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    32   0.019  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.043  18
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    34   0.049  7
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42   0.057  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   0.12   11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.23   15
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   0.24   11
dna update 2004. 1.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5XM24) RecName: Full=Autocrine proliferation repressor; AltNam...   295   2e-78
AC116987_4(AC116987|pid:none) Dictyostelium discoideum chromosom...   120   1e-25
CP000473_2389(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   101   5e-20
CP000127_1294(CP000127|pid:none) Nitrosococcus oceani ATCC 19707...    59   4e-07
AE015451_4974(AE015451|pid:none) Pseudomonas putida KT2440 compl...    57   1e-06
CP000712_4860(CP000712|pid:none) Pseudomonas putida F1, complete...    57   2e-06
AE003849_1380(AE003849|pid:none) Xylella fastidiosa 9a5c, comple...    52   4e-05
CU694393_139(CU694393|pid:none) Ralstonia solanacearum strain Mo...    51   8e-05
AE008922_2895(AE008922|pid:none) Xanthomonas campestris pv. camp...    51   8e-05
AM920689_1230(AM920689|pid:none) Xanthomonas campestris pv. camp...    50   1e-04
protein update 2009. 6.21
PSORT 

 psg: 0.97  gvh: 0.90  alm: 0.25  top: 0.13  tms: 0.07  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for VFI263 is exc
5' end seq. ID VFI263F
5' end seq. 
>VFI263F.Seq
AAATTTCCATTTTTTATTTATTGTAATTAAAAATTAATTAATAATAATCAAATATTATTA
TAATAAAAGATTGGTAAAAAACCATGTCAAAATTATTAATTTTATTGTTATTATCATTGG
TTGCTTCAATCTTTTCAACTCCATTGGATGATTATGTCAATGCTCCTGACGATACCTACA
AGTGGACATTAAATAATACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGA
CATCACAAACATGGATGGCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAA
TTTGTGTACCAAAAGGTGTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAA
ATGATAACTGGAAAGTACCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCAT
CTGGTTCAGTTAGTGTTGGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATG
ATGGTGTTCAAAGATTTGAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAA
ATACAAGTGAACCACTNNNNNNNNNN
Length of 5' end seq. 566
3' end seq. ID VFI263Z
3' end seq. 
>VFI263Z.Seq
NNNNNNNNNNACAATGCCAATTTANGCAATTGCATCAAGTGATGATGAATTTTTCCTTCC
ANATTCACCNCAATTTTTTTGGAATAATTTAACAGCAACCCCAAANAAACATTTTANAAT
NGNACCAAANGNTGAACNCTNTTTAANGGGTCATCAAATTGANATCATTTTATCGATTGT
TACATTTGTTANATTATTAATTACAAATCAACCNCGTCCAACTTTTANATGGGANATTAC
CTACTNTGAANATTTAAANANTGGGACAATNGTTTTAACAGNACCANAAGGNGGNATCAT
TCCANANAAAGTTAAAGTTTGGNCAGCAGNAACTGAAAGNACAACCANAANAGATTTCCG
NATCATCNCATGNATGGANATCNCCNAANGNATTCAATTCATCNTTTGGGATCCNTNTGA
NATTACNCCNACNTCCNCTGGNGNANANTCNATCCCTTTANCAAAACCNNANGCTGGNTG
GANAGCNTTCTTCCNTGAAGCTGAANATTTANATGCTAAAAANTCNANCGATGATGAANA
AACNCTTAAATTC
Length of 3' end seq. 553
Connected seq. ID VFI263P
Connected seq. 
>VFI263P.Seq
AAATTTCCATTTTTTATTTATTGTAATTAAAAATTAATTAATAATAATCAAATATTATTA
TAATAAAAGATTGGTAAAAAACCATGTCAAAATTATTAATTTTATTGTTATTATCATTGG
TTGCTTCAATCTTTTCAACTCCATTGGATGATTATGTCAATGCTCCTGACGATACCTACA
AGTGGACATTAAATAATACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGA
CATCACAAACATGGATGGCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAA
TTTGTGTACCAAAAGGTGTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAA
ATGATAACTGGAAAGTACCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCAT
CTGGTTCAGTTAGTGTTGGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATG
ATGGTGTTCAAAGATTTGAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAA
ATACAAGTGAACCACT----------ACAATGCCAATTTANGCAATTGCATCAAGTGATG
ATGAATTTTTCCTTCCANATTCACCNCAATTTTTTTGGAATAATTTAACAGCAACCCCAA
ANAAACATTTTANAATNGNACCAAANGNTGAACNCTNTTTAANGGGTCATCAAATTGANA
TCATTTTATCGATTGTTACATTTGTTANATTATTAATTACAAATCAACCNCGTCCAACTT
TTANATGGGANATTACCTACTNTGAANATTTAAANANTGGGACAATNGTTTTAACAGNAC
CANAAGGNGGNATCATTCCANANAAAGTTAAAGTTTGGNCAGCAGNAACTGAAAGNACAA
CCANAANAGATTTCCGNATCATCNCATGNATGGANATCNCCNAANGNATTCAATTCATCN
TTTGGGATCCNTNTGANATTACNCCNACNTCCNCTGGNGNANANTCNATCCCTTTANCAA
AACCNNANGCTGGNTGGANAGCNTTCTTCCNTGAAGCTGAANATTTANATGCTAAAAANT
CNANCGATGATGAANAAACNCTTAAATTC
Length of connected seq. 1099
Full length Seq ID -
Full length Seq. -
Length of full length seq. -