VFI261
Library VF
(Link to library)
Clone ID VFI261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFI261E
(Link to Original site)
Representative DNA sequence
>VFI261 (VFI261Q) /CSM/VF/VFI2-C/VFI261Q.Seq.d/
GTTAGTNACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCCAAGTTCAC
AAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCA
ATCGTCGAAAAAGTTAACTTTGCTGTTGCCAGCTTTGAAAAGACCGTCAACGTCACTGGT
GTCTTTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAAT
GGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGA
AAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCT
GGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAA
GCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAA
AAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTA
ATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATC
ACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCC
AGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTC
AAGAAATCAAGATCAACTAAGGNCTTAAATTCAATAAATTA
sequence update 2001.11.24
Translated Amino Acid sequence
vsxf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtk
lv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkpsglni*
VITSVEDYTKTGTNQNQRKLSPNTLNNTKLKKVKNQLKPLSKPSKRDVQSSVSLLTLQVH
KLKLTQKKAHVLEIQVNGGSIVEKVNFAVASFEKTVNVTGVFAENELIDVIGVTKGKGFN
GVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQ
AQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSI
TTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKXLNSIN


Translated Amino Acid sequence (All Frames)
Frame A:
vsxf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtk
lv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkpsglni*
VITSVEDYTKTGTNQNQRKLSPNTLNNTKLKKVKNQLKPLSKPSKRDVQSSVSLLTLQVH
KLKLTQKKAHVLEIQVNGGSIVEKVNFAVASFEKTVNVTGVFAENELIDVIGVTKGKGFN
GVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQ
AQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSI
TTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKXLNSIN


Frame B:
lvtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqs
wydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnrlgstfk
**lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshskft
n*n*lkrkhtslksksmvvqsskkltlllpalkrpstslvslpkmn*smlsv*pkvkvsm
vslkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvk
lnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervs
plklvvlpsrkslsnssippaslvtvfikplkirlnisasrnqdqlrx*iq*i


Frame C:
*xllnnnnnmshrkfeaprhgnlgfrprkraarhqgkvksfpkddrtqkvhltafmgyka
gmthvvrdlekpgskmhkkeiveavtiiecppmyivglvgyvetaqglktyktvwaqhls
dnfrrrlyknwykskskkaftkyvkqyeteegkksieaslqaikkrcsvvrviahtpssq
ikinskestrp*npsqwwfnrrks*lcccql*kdrqrhwclcrk*inrcyrcnqr*rfqw
ch*kmgcp*itkkdp*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrss
strrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyh
hsnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glkfnkl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI261 (VFI261Q) /CSM/VF/VFI2-C/VFI261Q.Seq.d/ 2448 0.0
VHA485 (VHA485Q) /CSM/VH/VHA4-D/VHA485Q.Seq.d/ 2416 0.0
VFB816 (VFB816Q) /CSM/VF/VFB8-A/VFB816Q.Seq.d/ 2416 0.0
VFI511 (VFI511Q) /CSM/VF/VFI5-A/VFI511Q.Seq.d/ 2415 0.0
VFG817 (VFG817Q) /CSM/VF/VFG8-A/VFG817Q.Seq.d/ 2415 0.0
VFG417 (VFG417Q) /CSM/VF/VFG4-A/VFG417Q.Seq.d/ 2415 0.0
CFF138 (CFF138Q) /CSM/CF/CFF1-B/CFF138Q.Seq.d/ 2415 0.0
AFA535 (AFA535Q) /CSM/AF/AFA5-B/AFA535Q.Seq.d/ 2415 0.0
VFK560 (VFK560Q) /CSM/VF/VFK5-C/VFK560Q.Seq.d/ 2411 0.0
VFF722 (VFF722Q) /CSM/VF/VFF7-A/VFF722Q.Seq.d/ 2409 0.0

own update 2003. 6.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 989 0.0 3
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728. 78 3e-47 10
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w. 70 1e-34 8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene. 62 6e-34 8
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region. 70 1e-26 9
BE641342|BE641342.1 Cri2_3_A04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_3_A04 5', mRNA sequence. 76 2e-21 3
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 66 7e-19 5
AX765804|AX765804.1 Sequence 13 from Patent WO03008440. 74 8e-19 4
AY052743|AY052743.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds. 74 8e-19 4
AF361101|AF361101.1 Arabidopsis thaliana putative L3 cytoplasmic ribosomal protein (F1I21.L3) mRNA, complete cds. 74 9e-19 4
dna update 2004. 4.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407.... 296 e-148
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L... 296 e-147
EF145479_1(EF145479|pid:none) Populus trichocarpa clone WS01125_... 291 e-145
AC125473_1(AC125473|pid:none) Medicago truncatula clone mth2-8j1... 294 e-145
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 296 e-145
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM... 296 e-145
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei... 296 e-144
AY343328_1(AY343328|pid:none) Triticum aestivum ribosomal protei... 292 e-144
(P35684) RecName: Full=60S ribosomal protein L3; &AK060925_1(AK... 293 e-143
AK230258_1(AK230258|pid:none) Arabidopsis thaliana mRNA for hypo... 290 e-143
protein update 2009. 7.10
PSORT

psg: 0.75 gvh: 0.29 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.15 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: mitochondrial

>> prediction for VFI261 is cyt

5' end seq. ID VFI261F
5' end seq.
>VFI261F.Seq
GTTAGTNACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA
AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGNNNNNNNNNN
Length of 5' end seq. 595
3' end seq. ID VFI261Z
3' end seq.
>VFI261Z.Seq
NNNNNNNNNNCTCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACAC
TCCAAGTTCACAAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCA
ATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCTGTTGCCAGCTTTGAAAAGACCGTCA
ACGTCACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTA
AAGGTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATA
AAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCG
TCCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACA
GAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCG
ATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAAC
ATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAA
GAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCA
TCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAAT
ATTTCGGCGTCAAGAAATCAAGATCAACTAAGGNCTTAAATTCAATAAATTA
Length of 3' end seq. 772
Connected seq. ID VFI261P
Connected seq.
>VFI261P.Seq
GTTAGTNACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA
AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAG----------CTCCA
AGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCCAAGTTCACAAAT
TAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAATCG
TCGAAAAAGTTAACTTTGCTGTTGCCAGCTTTGAAAAGACCGTCAACGTCACTGGTGTCT
TTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTG
TCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGG
TTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTC
AACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTC
AACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGA
CTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGC
TTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCA
CTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCA
AGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGA
AATCAAGATCAACTAAGGNCTTAAATTCAATAAATTA
Length of connected seq. 1347
Full length Seq ID VFI261E
Full length Seq.
>VFI261E.Seq
GTTAGTNACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCCAAGTTCAC
AAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCA
ATCGTCGAAAAAGTTAACTTTGCTGTTGCCAGCTTTGAAAAGACCGTCAACGTCACTGGT
GTCTTTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAAT
GGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGA
AAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCT
GGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAA
GCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAA
AAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTA
ATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATC
ACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCC
AGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTC
AAGAAATCAAGATCAACTAAGGNCTTAAATTCAATAAATTA
Length of full length seq. 1241