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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFI240
Library VF
(Link to library)
Clone ID VFI240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID VFI240P
(Link to Original site)
Representative DNA sequence 
>VFI240 (VFI240Q) /CSM/VF/VFI2-B/VFI240Q.Seq.d/
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCXXXXXXXXXXGAAGGTNTTNAA
NAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANATCAGTGGT
GGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCNATNGTAAANACT
NAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGATGCTTTTGCC
TGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAATCAAAANAAT
ATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAAATGNAGCT
ACNAACGGNGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGGAGGTGGTAAA
NAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTCGT
sequence update 2001.11.22
Translated Amino Acid sequence 
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMIC---

---EGXXXIKXQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPXVXTXLFVPIXYIMKFK
NXDDAFAWNNEVPQGXSXSLFXNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE
KKTGGGKXSGXDSWKQYCRR
Translated Amino Acid sequence (All Frames) 
Frame A:
tknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllq
llevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvk
ftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishv
pylvgmlqsq*f---

---EGXXXIKXQGGKVVIGGNKLXISGGNFVEPTVVAIEHDAPXVXTXLFVPIXYIMKFK
NXDDAFAWNNEVPQGXSXSLFXNNQXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE
KKTGGGKXSGXDSWKQYCRR

Frame B:
qktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmc
rtwleccnlndl---

---kvxxk*kxkvvrsslvvinsxsvvetllnqpslplnmmlxx*xlnxlfqxxt**nsk
xltmllpgimksxkvxhxpxsqtikxissngldxpdltvx*lt*mxlxtxlklvxplevk
krpevvxnlaqtagnsiav

Frame C:
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMIC---

---rxxxnkkxrw*grhww**trxqwwklc*tnrrch*t*csxxkxxtxcsnxxhneiqk
x*rcfcle**spxrxxxfpxxkqskxylqmawtxri*lwxs*rkxsyxrx*nwwxxwr*k
kdrrw*xiwxrqletvlps
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI240 (VFI240Q) /CSM/VF/VFI2-B/VFI240Q.Seq.d/                       1707   0.0
VFN595 (VFN595Q) /CSM/VF/VFN5-D/VFN595Q.Seq.d/                       1146   0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/                       1146   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1146   0.0
VFJ233 (VFJ233Q) /CSM/VF/VFJ2-B/VFJ233Q.Seq.d/                       1146   0.0
VFG476 (VFG476Q) /CSM/VF/VFG4-D/VFG476Q.Seq.d/                       1146   0.0
VFF640 (VFF640Q) /CSM/VF/VFF6-B/VFF640Q.Seq.d/                       1146   0.0
VFF540 (VFF540Q) /CSM/VF/VFF5-B/VFF540Q.Seq.d/                       1146   0.0
VFE748 (VFE748Q) /CSM/VF/VFE7-B/VFE748Q.Seq.d/                       1146   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1146   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   767   0.0    7
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   6e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   1e-08  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   1e-07  3
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence.    42   2e-05  3
CD733534|CD733534.1 4045967 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_17H10 5', mRNA sequence.    42   3e-05  3
BG711333| (S74728) antiquitin=26g turgor protein homolog [human, kidney, Peptide, 511 aa] [Homo sapiens]G, mRNA sequence.    42   3e-05  3
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence.    42   3e-05  3
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence.    42   3e-05  3
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence.    42   3e-05  3
dna update 2004. 1.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   369   e-100
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   228   2e-58
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   226   9e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   223   1e-56
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   220   7e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   219   1e-55
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   217   6e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   216   1e-54
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   215   2e-54
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   215   2e-54
protein update 2009. 6.21
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFI240 is nuc
5' end seq. ID VFI240F
5' end seq. 
>VFI240F.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCNNNNNNNNNN
Length of 5' end seq. 588
3' end seq. ID VFI240Z
3' end seq. 
>VFI240Z.Seq
NNNNNNNNNNGAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGG
TAATAAACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACA
TGATGCTCCNATNGTAAANACTNAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAA
AAATNTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCT
NTTCNCAAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGG
NATAGTTAACGTAAATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCNTTGGAGGTGA
AAAAAAGACCGGAGGTGGTAAANAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTCG
T
Length of 3' end seq. 421
Connected seq. ID VFI240P
Connected seq. 
>VFI240P.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGC----------GAAGGTNTTNAA
NAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANATCAGTGGT
GGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCNATNGTAAANACT
NAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGATGCTTTTGCC
TGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAATCAAAANAAT
ATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAAATGNAGCT
ACNAACGGNGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGGAGGTGGTAAA
NAATCTGGCNCAGACAGCTGGAAACAGTATTGCCGTCGT
Length of connected seq. 989
Full length Seq ID -
Full length Seq. -
Length of full length seq. -