>VFI236 (VFI236Q) /CSM/VF/VFI2-B/VFI236Q.Seq.d/
CACTGTTGGCCTACTGGTATATATAAACAATCAATTTAAAAAATGATGAAATTTTTAATT
GTTTTAATTTTAGCATTATTCGCTTTATCAAGTGTTAATGCAAGCGGCGCTATTGAATGC
GAACTTTGTGAATATGCTGCCAATTATGGTGAATTGCTCATTCAATCAAATGCCACCGAA
ACTGAAATTATCGATAAAGTTGAAAACTTTTGCAAAGTTATCCCATCTAGTTTCCAAGCC
ACTTGTGATAGTTTAATCGCAAACTATGGTAAACAACTCATTCAAATGATTGTCAACAAA
GAATCACCAAGCACTTTATGCGCTCAAATTGATATGTGTGCATCATCAACTGAAGCCGTC
CAAGGTATTTTAGAATGTGACATTTGCCAATTCATCGTTAAACAAGTCAACAAATATATT
TCAGGTAACGCAACTGAAGCCCAAATCCTCAAATTCTTAGATACTGATTGTGAAGTCTTT
GGTAAAGGTGGTTCAGTAACTTGTCAAAACATTGTCAACAACTATGCCCCACAAATCATC
AATTTAATCATTAACAACGCATCACCATCCCAXXXXXXXXXX

hcwptgiykqsi*KMMKFLIVLILALFALSSVNASGAIECELCEYAANYGELLIQSNATE
TEIIDKVENFCKVIPSSFQATCDSLIANYGKQLIQMIVNKESPSTLCAQIDMCASSTEAV
QGILECDICQFIVKQVNKYISGNATEAQILKFLDTDCEVFGKGGSVTCQNIVNNYAPQII
NLIINNASPS---

Frame A:
hcwptgiykqsi*KMMKFLIVLILALFALSSVNASGAIECELCEYAANYGELLIQSNATE
TEIIDKVENFCKVIPSSFQATCDSLIANYGKQLIQMIVNKESPSTLCAQIDMCASSTEAV
QGILECDICQFIVKQVNKYISGNATEAQILKFLDTDCEVFGKGGSVTCQNIVNNYAPQII
NLIINNASPS---


Frame B:
tvgllvyinnqfkk**nf*lf*f*hyslyqvlmqaallnanfvnmlpimvncsfnqmppk
lklsiklktfaklshlvskplviv*sqtmvnnsfk*lstknhqalyalklicvhhqlkps
kvf*nvtfansslnkstnifqvtqlkpkssns*ilivkslvkvvq*lvktlsttmphkss
i*sltthhhp---


Frame C:
llaywyi*tinlkndeifncfnfsiirfikc*ckrry*mrtl*iccqlw*iahsikchrn
*nyr*s*kllqsypi*fpshl**fnrklw*tthsndcqqritkhfmrsn*yvciin*srp
ryfrm*hlpihr*tsqqiyfr*rn*spnpqilry*l*slw*rwfsnlskhcqqlcptnhq
fnh*qriti---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI236 (VFI236Q) /CSM/VF/VFI2-B/VFI236Q.Seq.d/                       1134   0.0
VFL608 (VFL608Q) /CSM/VF/VFL6-A/VFL608Q.Seq.d/                       1092   0.0
VFL571 (VFL571Q) /CSM/VF/VFL5-C/VFL571Q.Seq.d/                       1092   0.0
VFF888 (VFF888Q) /CSM/VF/VFF8-D/VFF888Q.Seq.d/                       1092   0.0
VFF843 (VFF843Q) /CSM/VF/VFF8-B/VFF843Q.Seq.d/                       1092   0.0
VFF621 (VFF621Q) /CSM/VF/VFF6-A/VFF621Q.Seq.d/                       1092   0.0
VFF267 (VFF267Q) /CSM/VF/VFF2-C/VFF267Q.Seq.d/                       1092   0.0
VFG332 (VFG332Q) /CSM/VF/VFG3-B/VFG332Q.Seq.d/                       1084   0.0
VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/                       1072   0.0
VSD442 (VSD442Q) /CSM/VS/VSD4-B/VSD442Q.Seq.d/                       1068   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AU206530|AU206530.1 Caenorhabditis elegans cDNA clone:yk877f01 : 5' end, single read.   222   4e-54  1
AF175768|AF175768.1 Dictyostelium discoideum SAPLIP C protein mRNA, complete cds.    84   4e-13  2
AY379774|AY379774.1 Medicago truncatula chromosome 5 clone MtH1-015B03 strain Jemalong A17, WORKING DRAFT SEQUENCE, 27 unordered pieces.    52   0.002  3
AC019292|AC019292.10 Homo sapiens, clone RP11-23J14, complete sequence.    44   0.004  7
AC016100|AC016100.4 Homo sapiens clone RP11-26F22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    38   0.007  7
AC129358|AC129358.4 Rattus norvegicus clone CH230-387H5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   0.009  4
AL132948|AL132948.2 Caenorhabditis elegans YAC Y39B6A.             40   0.016  8
AC025855|AC025855.3 Homo sapiens chromosome 8 clone RP11-392L24 map 8, LOW-PASS SEQUENCE SAMPLING.    40   0.020  2
AC010838|AC010838.11 Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone BACR13D24, complete sequence.    36   0.029  5
AX360265|AX360265.1 Sequence 18 from Patent WO0204489.             42   0.033  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    99   8e-20
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167...    99   8e-20
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    97   3e-19
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...    96   5e-19
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    93   6e-18
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    93   6e-18
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...    93   6e-18
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    92   1e-17
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    92   1e-17
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei...    88   1e-16

 psg: 0.99  gvh: 0.87  alm: 0.45  top: 0.07  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VFI236 is exc

>VFI236F.Seq
CACTGTTGGCCTACTGGTATATATAAACAATCAATTTAAAAAATGATGAAATTTTTAATT
GTTTTAATTTTAGCATTATTCGCTTTATCAAGTGTTAATGCAAGCGGCGCTATTGAATGC
GAACTTTGTGAATATGCTGCCAATTATGGTGAATTGCTCATTCAATCAAATGCCACCGAA
ACTGAAATTATCGATAAAGTTGAAAACTTTTGCAAAGTTATCCCATCTAGTTTCCAAGCC
ACTTGTGATAGTTTAATCGCAAACTATGGTAAACAACTCATTCAAATGATTGTCAACAAA
GAATCACCAAGCACTTTATGCGCTCAAATTGATATGTGTGCATCATCAACTGAAGCCGTC
CAAGGTATTTTAGAATGTGACATTTGCCAATTCATCGTTAAACAAGTCAACAAATATATT
TCAGGTAACGCAACTGAAGCCCAAATCCTCAAATTCTTAGATACTGATTGTGAAGTCTTT
GGTAAAGGTGGTTCAGTAACTTGTCAAAACATTGTCAACAACTATGCCCCACAAATCATC
AATTTAATCATTAACAACGCATCACCATCCCANNNNNNNNNN