VFI215
Library VF
(Link to library)
Clone ID VFI215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID VFI215P
(Link to Original site)
Representative DNA sequence
>VFI215 (VFI215Q) /CSM/VF/VFI2-A/VFI215Q.Seq.d/
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCCATG
TAAGAATGGAXXXXXXXXXXTGCACAAACTTGGAATTTAACAGCTCATGGTAAGAATATG
CATAGTGCTATGCCATATAGAACTGTAAACTCTGTAGAGTTGGTCAACGAAGCATTGGCT
GAGATTCAACGTCGTTTCTACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAA
TTCGATTGTTCATCAACAATGAAACCAACCTTATGGAAACCAATCGCCGGTAGTTACAAT
ACCATTCCAGGTGAGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATG
AAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAA
CTTCGTAATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCA
GTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAA
CTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTA
ACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTC
GATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCT
TTATTATCTGATTTTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAA
AAAATTAAATTAAAATCCAATAAAACTCTTTTTTA
sequence update 2001.11.22
Translated Amino Acid sequence
i*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEAL
TPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADK
TAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEEN
DEIPGIGVDALDHSGKMNPCKNG---

---AQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDCS
STMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNR
GPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPVA
TCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTXIY*kkikl
ksnktlf


Translated Amino Acid sequence (All Frames)
Frame A:
nltnfnk*knd*tscfi*ir*kkipyiir*inw*n*kspk*ttsfnsn*r*crssch*sf
nsilkskwwcfrirtssl*ssklskkr*hyy*iprylqrn*ftknnficwftfrcsss**
nclg*ksipiny*r**iiw*ryn*lfrtcciinrfiystcn*ktst*tfnfcsiyck*re
**nsrywcrcirs*wkdesm*ew---

---ctnlefnssw*eya*cyai*ncklcrvgqrsig*dstsflh*lqttskrsri*irlf
innetnlmetnrr*lqyhsr*vnhlw*ysfnsil*yernacks*rlyqryqcqyh*ts**
rsiq*i*ctsl*rc*tsqrfsly*mvr*siswcrl*trl*wlqstw*syf*nfrfinssc
nlwyssfgs*spr*wfrysnywfw*rrnlsc***icfii*f*kcy*nfisynxllekn*i
kiq*nsfl

Frame B:
i*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEAL
TPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADK
TAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEEN
DEIPGIGVDALDHSGKMNPCKNG---

---AQTWNLTAHGKNMHSAMPYRTVNSVELVNEALAEIQRRFYIDFKPHPKEAEYKFDCS
STMKPTLWKPIAGSYNTIPGESTICGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNR
GPYSKYDVPASEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPVA
TCGTLPLVRDLQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTXIY*kkikl
ksnktlf

Frame C:
fnkfq*ikk*lnqllhmn*mkkdslhy*vn*lvklkiskidhql*fqlkimqvvmslkl*
lht*kqmvvf*n*nkftviq*tiqkevtlllntqvppkelvhqkqfhllvhi*m*fqlik
llgieihsn*llkvinymvevqliv*dmlhy*qiylfnlqlknqhlniqflqyll*vkrm
mkfqvlvsmh*iiver*ihvrm---

---hklgi*qlmvricivlchiel*tl*swstkhwlrfnvvstltsnhiqkkpninsivh
qq*nqpygnqspvvtipfqvsqpfvvifv*lhsmi*kkcvqklkviskismpislnfvie
vhtvnmmyqplkvlnqskvqsllng*vkhqlvslvnstlmvtkhlvklllkf*vh*lqlq
lvvlflwfviskivvsifkllvlvkkklimlimnmlyylilkmllkfylvqxfirkkln*
npiklff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI215 (VFI215Q) /CSM/VF/VFI2-A/VFI215Q.Seq.d/ 2537 0.0
VFF823 (VFF823Q) /CSM/VF/VFF8-A/VFF823Q.Seq.d/ 1409 0.0
VHC429 (VHC429Q) /CSM/VH/VHC4-B/VHC429Q.Seq.d/ 1407 0.0
VFJ241 (VFJ241Q) /CSM/VF/VFJ2-B/VFJ241Q.Seq.d/ 1407 0.0
VFF792 (VFF792Q) /CSM/VF/VFF7-D/VFF792Q.Seq.d/ 1407 0.0
VFD285 (VFD285Q) /CSM/VF/VFD2-D/VFD285Q.Seq.d/ 1407 0.0
SFI609 (SFI609Q) /CSM/SF/SFI6-A/SFI609Q.Seq.d/ 1394 0.0
VFB659 (VFB659Q) /CSM/VF/VFB6-C/VFB659Q.Seq.d/ 1390 0.0
VFH605 (VFH605Q) /CSM/VF/VFH6-A/VFH605Q.Seq.d/ 1382 0.0
VFH796 (VFH796Q) /CSM/VF/VFH7-D/VFH796Q.Seq.d/ 1374 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds. 1338 0.0 2
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 36 7e-05 30
AC108003|AC108003.2 Homo sapiens chromosome 8 clone CTD-2337K24 map 8, LOW-PASS SEQUENCE SAMPLING. 42 0.006 5
AB036420|AB036420.1 Citrullus lanatus mRNA for DIP-1, complete cds. 40 0.012 2
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5. 34 0.017 17
BZ938047|BZ938047.1 CH240_62J18.TJ CHORI-240 Bos taurus genomic clone CH240_62J18, genomic survey sequence. 42 0.060 2
BX248584|BX248584.1 Blochmannia floridanus complete genome; segment 1/3. 34 0.065 12
AY379773|AY379773.1 Medicago truncatula chromosome 5 clone MtH1-003I09 strain Jemalong A17, WORKING DRAFT SEQUENCE, 2 ordered pieces. 30 0.077 9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 30 0.20 18
BG596574|BG596574.1 EST495252 cSTS Solanum tuberosum cDNA clone cSTS15E15 5' sequence, mRNA sequence. 36 0.21 3
dna update 2004. 1.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase; EC=... 466 0.0
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co... 462 0.0
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ... 234 e-109
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly... 220 e-105
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac... 228 e-104
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 209 e-102
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c... 213 e-100
CP000582_97(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 198 4e-98
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom... 228 5e-96
FJ899850_1(FJ899850|pid:none) Populus maximowiczii x Populus nig... 214 2e-79
protein update 2009. 6.21
PSORT

psg: 0.64 gvh: 0.42 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for VFI215 is cyt

5' end seq. ID VFI215F
5' end seq.
>VFI215F.Seq
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCCATG
TAAGAATGGANNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID VFI215Z
3' end seq.
>VFI215Z.Seq
NNNNNNNNNNTGCACAAACTTGGAATTTAACAGCTCATGGTAAGAATATGCATAGTGCTA
TGCCATATAGAACTGTAAACTCTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAAC
GTCGTTTCTACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTT
CATCAACAATGAAACCAACCTTATGGAAACCAATCGCCGGTAGTTACAATACCATTCCAG
GTGAGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATGAAAGAAATGC
GTGCAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTAATA
GAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTT
CAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTG
ATGGTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTG
CAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAA
TTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTG
ATTTTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAAAAAATTAAAT
TAAAATCCAATAAAACTCTTTTTTA
Length of 3' end seq. 745
Connected seq. ID VFI215P
Connected seq.
>VFI215P.Seq
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCCATG
TAAGAATGGA----------TGCACAAACTTGGAATTTAACAGCTCATGGTAAGAATATG
CATAGTGCTATGCCATATAGAACTGTAAACTCTGTAGAGTTGGTCAACGAAGCATTGGCT
GAGATTCAACGTCGTTTCTACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAA
TTCGATTGTTCATCAACAATGAAACCAACCTTATGGAAACCAATCGCCGGTAGTTACAAT
ACCATTCCAGGTGAGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATG
AAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAA
CTTCGTAATAGAGGTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCA
GTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAA
CTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTA
ACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTC
GATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCT
TTATTATCTGATTTTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAA
AAAATTAAATTAAAATCCAATAAAACTCTTTTTTA
Length of connected seq. 1345
Full length Seq ID -
Full length Seq. -
Length of full length seq. -