VFI213 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFI213
Library	VF (Link to library)
Clone ID	VFI213 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13202-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFI2-A/VFI213Q.Seq.d/
Representative seq. ID	VFI213E (Link to Original site)
Representative DNA sequence	>VFI213 (VFI213Q) /CSM/VF/VFI2-A/VFI213Q.Seq.d/ ATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATC ATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCG TCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCA ATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAA ACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCA AACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTC TTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGA AAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGA AGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGA ATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGT CAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGA CAAACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAAT TGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAA ATCTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGT TGGTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTC ATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGT TGTTGC
sequence update	2001.11.24
Translated Amino Acid sequence	FSAVIIKSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQTDQ FDNIKVGQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGS CWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEE CLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEI VTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTS WGDNGTFLIKRGDCGISDDVV
Translated Amino Acid sequence (All Frames)	Frame A: ifcsnnkikkkinesiiiiscnfihykfslcckdywssnqitnypsrnlgrrtns iryswpiirfqekskqtktsnilsirssnsnffqcsnqlaklyyhsdsksskmwf llgfwcyrisysfmysqkcsikfygygylnrlrwcllcmelvkkarccirr mssiynsnlstssttmfkfcqhsimyrvsikflfnlfsrqtngnlffrl*snharn cywssrslfhclrfpclqiwclrphnwrfrwslctrwfrylkwcllcrqpmdnf mgwnflnqtwlrylrcc Frame B: FSAVIIKSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQTDQ FDNIKVGQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGS CWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEE CLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEI VTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTS WGDNGTFLIKRGDCGISDDVV Frame C: flqnqikknikeyyyhlfysliqpllrlilvvqpnhiklsitklgknklin siilklanyvsrevqtdqnfklnlmihefkfqllsmlkptgqivlplvrfkikqdvvl vgllvlqnqllivyvftimkmfnvlwiwllvmklitvvkvvmpslhgigeskvlyqkn vfhiqfqlvhqlnnhvilstlhhvlksvnqiplfilktnikwlkfilstlmkqsckkl llmvqsklvslslkislltnlvftstqlvkivvtvlnslvsvpmvlitmplttngqlh gvimelssnvviavslmtll
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFI438 (VFI438Q) /CSM/VF/VFI4-B/VFI438Q.Seq.d/ 1861 0.0 VFI213 (VFI213Q) /CSM/VF/VFI2-A/VFI213Q.Seq.d/ 1861 0.0 VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/ 1861 0.0 VFE574 (VFE574Q) /CSM/VF/VFE5-D/VFE574Q.Seq.d/ 1846 0.0 VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/ 1842 0.0 SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/ 1842 0.0 VFH406 (VFH406Q) /CSM/VF/VFH4-A/VFH406Q.Seq.d/ 1836 0.0 VFI120 (VFI120Q) /CSM/VF/VFI1-A/VFI120Q.Seq.d/ 1828 0.0 VFK428 (VFK428Q) /CSM/VF/VFK4-B/VFK428Q.Seq.d/ 1786 0.0 VFN645 (VFN645Q) /CSM/VF/VFN6-B/VFN645Q.Seq.d/ 1742 0.0
own update	2001.12. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BG132206\|BG132206.1 EST465098 tomato crown gall Lycopersicon esculentum cDNA clonecTOE6F18 5' sequence, mRNA sequence. 54 2e-04 2 CK294078\|CK294078.1 EST756792 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCK72 5' end, mRNA sequence. 54 3e-04 2 CF828170\|CF828170.1 UCRCR01_01C19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence. 54 0.004 1 CA522795\|CA522795.1 KS12012H05 KS12 Capsicum annuum cDNA, mRNA sequence. 54 0.004 1 AW928683\|AW928683.1 EST337471 tomato flower buds 8 mm to pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOC2D20 5', mRNA sequence. 54 0.004 1 X81995\|X81995.1 N.rustica mRNA for cathepsin B-like cysteine proteinase. 54 0.004 1 BF187220\|BF187220.1 EST443507 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA39D17 5' sequence, mRNA sequence. 54 0.004 1 BE473010\|BE473010.1 EST417863 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA35F24, mRNA sequence. 54 0.004 1 CF831127\|CF831127.1 UCRCR01_05N10_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa05N10, mRNA sequence. 54 0.004 1 CF828247\|CF828247.1 UCRCR01_01E19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01E19, mRNA sequence. 54 0.004 1
dna update	2004. 4.30
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54QD9) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 626 e-178 AC149038_4(AC149038\|pid:none) Medicago truncatula chromosome 7 c... 238 3e-61 (P00787) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 233 6e-60 AB377273_1(AB377273\|pid:none) Raphanus sativus CatB mRNA for cat... 233 6e-60 BC072490_1(BC072490\|pid:none) Rattus norvegicus cathepsin B, mRN... 232 1e-59 (P07688) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 232 1e-59 M11305_1(M11305\|pid:none) Rat cathepsin B mRNA, 3' end. 232 2e-59 AF083797_1(AF083797\|pid:none) Arabidopsis thaliana clone sps897 ... 231 2e-59 (A1E295) RecName: Full=Cathepsin B; EC=3.4.22.1; Contai... 231 3e-59 AC149038_3(AC149038\|pid:none) Medicago truncatula chromosome 7 c... 231 4e-59
protein update	2009. 7.10
PSORT	psg: 0.56 gvh: 0.68 alm: 0.19 top: 0.47 tms: 0.07 mit: 0.43 mip: 0.08 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.29 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 28.0 %: mitochondrial 20.0 %: cytoplasmic 16.0 %: Golgi 12.0 %: nuclear 12.0 %: endoplasmic reticulum 4.0 %: peroxisomal 4.0 %: vacuolar 4.0 %: plasma membrane >> prediction for VFI213 is mit
5' end seq. ID	VFI213F
5' end seq.	>VFI213F.Seq ATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATC ATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCG TCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCA ATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAA ACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCA AACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTC TTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGA AAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGA AGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGA ATGTCTTCCATATACAATTCCANNNNNNNNNN
Length of 5' end seq.	572
3' end seq. ID	VFI213Z
3' end seq.	>VFI213Z.Seq NNNNNNNNNNAACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCT TTCAATGCTCAAACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCA AGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATT CACAATAATGAAAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGAT AACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCT GTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGT TTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATT TATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATC ATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTC CTTGCTTACAAATCTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGT GTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAA TGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATC TCTGATGACGTTGTTGC
Length of 3' end seq.	737
Connected seq. ID	VFI213P
Connected seq.	>VFI213P.Seq ATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATC ATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCG TCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCA ATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAA ACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCA AACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTC TTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGA AAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGA AGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGA ATGTCTTCCATATACAATTCCA----------AACTTCAAATTAAATCTTATGATCCATT AGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGTACTACCAT TAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCTACAGAATC AGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTTATGGATAT GGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCTGCATGGAA TTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTG TCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTG TCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTC TTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTG TTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCACACAACTGG TAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAATGGTGTTGA TTACTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAAT CAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGC
Length of connected seq.	1289
Full length Seq ID	VFI213E
Full length Seq.	>VFI213E.Seq ATTTTCTGCAGTAATAATAAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATC ATTAGTTGTAATTTTATTCATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCG TCCAACCAAATCACATAAAACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCA ATTCGATAATATTAAAGTTGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAA ACTTCAAATTAAATCTTATGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCA AACCAACTGGCCAAATTGTACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTC TTGTTGGGCTTTTGGTGCTACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGA AAATGTTCAATTAAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGA AGGTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGA ATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGT CAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGA CAAACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAAT TGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAA ATCTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGT TGGTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTC ATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGT TGTTGC
Length of full length seq.	966

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas