AFM648
Library AF
(Link to library)
Clone ID AFM648
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM648 (AFM648Q) /CSM/AF/AFM6-B/AFM648Q.Seq.d/
AACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACTTGATCTTTTTTATTTTATATC
ACACACATACATAATAAAAAACTATGGCAACTCAACAACAACAACAACAACAACAACAAC
AACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTCAACAAGCACAATCTGCTTCTG
ATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTACAACAGAATCAATACTTGGTG
ATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGATTAAAGGATGTAGCAGTAAAGG
TTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATTTCAGAAAGGAAGTTGCAATTA
TGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAGGTGCATGTACATCTACACCAG
GTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATCTTGAATCATTATTATTAGACC
CAATGGTTAAACTCCCATTGATCACTCGTATGAGAATGGCAAAAGATGCAGCTTTAGGTG
TTTTATGGTTACATTCTTCAAATCCAGTATTCATTCACAGAGATTTAAAGACAAGCAATC
TTTTAGTTGATGCTAAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence
pykvrktsvhknliffilyhtht**KTMATQQQQQQQQQQQQQIKARKDIQIQQAQSASD
ILGPPEISETEITTESILGDGSFGTVYKGRCRLKDVAVKVMLKQVDQKTLTDFRKEVAIM
SKIFHPNIVLFLGACTSTPGKLMICTELMKGNLESLLLDPMVKLPLITRMRMAKDAALGV
LWLHSSNPVFIHRDLKTSNLLVDA---


Translated Amino Acid sequence (All Frames)
Frame A:
nhik*erqvyikt*sflfyithihnkklwqlnnnnnnnnnnnsklrlekiykfnkhnlll
iy*dhqkfqklklqqnqylvmevlvlfikvvvd*rm*q*rlc*nksikrl*liserklql
*vkffiqilyff*vhvhlhqvnl*fvqn**kvilnhyy*tqwlnsh*slv*ewqkmql*v
fygyilqiqysftei*rqaif*lml---


Frame B:
ti*sekdkct*kldlfyfishtyiiknygnstttttttttttan*g*krytnststicf*
yirttrnfrn*nynrintw*wkfwycl*rsl*ikgcsskgyvktsrskdfn*fqkgscny
e*nfsskyctffrcmyiytr*tydlyriner*s*iiiirpng*tpidhsyengkrcsfrc
fmvtffkssihsqrfkdkqsfs*c---


Frame C:
pykvrktsvhknliffilyhtht**KTMATQQQQQQQQQQQQQIKARKDIQIQQAQSASD
ILGPPEISETEITTESILGDGSFGTVYKGRCRLKDVAVKVMLKQVDQKTLTDFRKEVAIM
SKIFHPNIVLFLGACTSTPGKLMICTELMKGNLESLLLDPMVKLPLITRMRMAKDAALGV
LWLHSSNPVFIHRDLKTSNLLVDA---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM648 (AFM648Q) /CSM/AF/AFM6-B/AFM648Q.Seq.d/ 928 0.0
AFE822 (AFE822Q) /CSM/AF/AFE8-A/AFE822Q.Seq.d/ 928 0.0
VFK734 (VFK734Q) /CSM/VF/VFK7-B/VFK734Q.Seq.d/ 920 0.0
CHR241 (CHR241Q) /CSM/CH/CHR2-B/CHR241Q.Seq.d/ 920 0.0
CFB221 (CFB221Q) /CSM/CF/CFB2-A/CFB221Q.Seq.d/ 920 0.0
AFM201 (AFM201Q) /CSM/AF/AFM2-A/AFM201Q.Seq.d/ 914 0.0
AFK731 (AFK731Q) /CSM/AF/AFK7-B/AFK731Q.Seq.d/ 886 0.0
AFF486 (AFF486Q) /CSM/AF/AFF4-D/AFF486Q.Seq.d/ 876 0.0
VFD621 (VFD621Q) /CSM/VF/VFD6-A/VFD621Q.Seq.d/ 856 0.0
VFO835 (VFO835Q) /CSM/VF/VFO8-B/VFO835Q.Seq.d/ 842 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ329837) Dictyostelium discoideum cDNA clone:dda26o12, 5' ... 521 0.0 3
(BJ323345) Dictyostelium discoideum cDNA clone:dda10l06, 5' ... 521 0.0 3
(BJ359886) Dictyostelium discoideum cDNA clone:ddc3i06, 5' e... 521 0.0 3
(BJ370991) Dictyostelium discoideum cDNA clone:ddc56a12, 5' ... 521 0.0 3
(BJ415348) Dictyostelium discoideum cDNA clone:ddv22d09, 5' ... 513 0.0 3
(BJ329445) Dictyostelium discoideum cDNA clone:dda25a02, 5' ... 521 0.0 4
(BJ327970) Dictyostelium discoideum cDNA clone:dda22n07, 5' ... 521 0.0 3
(BJ323710) Dictyostelium discoideum cDNA clone:dda11l22, 5' ... 521 0.0 3
(BJ412361) Dictyostelium discoideum cDNA clone:ddv8i06, 5' e... 521 0.0 3
(BJ417350) Dictyostelium discoideum cDNA clone:ddv30f10, 5' ... 521 0.0 3
dna update 2009. 4.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RB7) RecName: Full=Dual specificity protein kinase shkA; ... 258 7e-68
(Q54Y55) RecName: Full=Dual specificity protein kinase shkC; ... 169 4e-41
AC012679_7(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ... 108 2e-22
EF014094_1(EF014094|pid:none) Synthetic construct HA-tagged prot... 108 2e-22
AC139526_35(AC139526|pid:none) Medicago truncatula clone mth2-9b... 107 3e-22
AM435166_2(AM435166|pid:none) Vitis vinifera contig VV78X053282.... 106 6e-22
(Q54IP4) RecName: Full=Dual specificity protein kinase shkB; ... 105 8e-22
EF014090_1(EF014090|pid:none) Synthetic construct flag-tagged pr... 105 8e-22
AY059769_1(AY059769|pid:none) Arabidopsis thaliana putative prot... 105 1e-21
AC012563_26(AC012563|pid:none) Arabidopsis thaliana chromosome 1... 105 1e-21
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM648 is

5' end seq. ID AFM648F
5' end seq.
>AFM648F.Seq
AACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACTTGATCTTTTTTATTTTATATC
ACACACATACATAATAAAAAACTATGGCAACTCAACAACAACAACAACAACAACAACAAC
AACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTCAACAAGCACAATCTGCTTCTG
ATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTACAACAGAATCAATACTTGGTG
ATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGATTAAAGGATGTAGCAGTAAAGG
TTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATTTCAGAAAGGAAGTTGCAATTA
TGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAGGTGCATGTACATCTACACCAG
GTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATCTTGAATCATTATTATTAGACC
CAATGGTTAAACTCCCATTGATCACTCGTATGAGAATGGCAAAAGATGCAGCTTTAGGTG
TTTTATGGTTACATTCTTCAAATCCAGTATTCATTCACAGAGATTTAAAGACAAGCAATC
TTTTAGTTGATGCTAAXXXXXXXXXX
Length of 5' end seq. 626
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -