>VFI163 (VFI163Q) /CSM/VF/VFI1-C/VFI163Q.Seq.d/
TATTTAAAATACAATCACATACATAAACTATCTAGATTTTTCACACATATATATATATAA
ATAAAAAAATAAAATGGGTCTTTTAGATGGAAATCCAGCCAATGAAACATCATTGGTTTT
ATTATTATTTGCCGATTTTTCTTCAATGNTGGGTTGTATGGCAGTGTTGATTGGTTTTTG
GAGATTAAAACTTTTGCGTAATCATGTTACAAAAGTAATTGCATGTTTTTGTGCTACCTC
CTTTTGTAAAGATTTTCCTTCAACAATTTTAACTTTAACAAATACAGCTGTCAATGGNGG
TTTCCCTTGTTATTTATATGCAATTGNAATTACATATGGTAGTTTTGCATGTTGGTTGTG
GACTTTATGTCTTGCAATTAGTATTTATATGTTAATTGTAAAAAGAGAACCAGAACCAGA
AAGATTTGAAAAATATTATTATTTATTATGTTGGGGTTTACCATTAATTTCAACAATGGG
CTATGTTGGCAAXXXXXXXXXX

i*ntityinyldfshiyiyk*KNKMGLLDGNPANETSLVLLLFADFSSMXGCMAVLIGFW
RLKLLRNHVTKVIACFCATSFCKDFPSTILTLTNTAVNGGFPCYLYAIXITYGSFACWLW
TLCLAISIYMLIVKREPEPERFEKYYYLLCWGLPLISTMGYVG---

Frame A:
ylkynhihklsrffthiyi*ikk*ngsfrwkssq*niigfiiicrfffnxglygsvdwfl
eiktfa*scyksncmflcylll*rfsfnnfnfnkyscqwxfpllficnxnyiw*fcmlvv
dfmscn*ylyvnckkrtrtrki*killfimlgftinfnnglcw---


Frame B:
i*ntityinyldfshiyiyk*KNKMGLLDGNPANETSLVLLLFADFSSMXGCMAVLIGFW
RLKLLRNHVTKVIACFCATSFCKDFPSTILTLTNTAVNGGFPCYLYAIXITYGSFACWLW
TLCLAISIYMLIVKREPEPERFEKYYYLLCWGLPLISTMGYVG---


Frame C:
fkiqsht*ti*ifhtyiyinkkikwvf*meiqpmkhhwfyyylpiflqxwvvwqc*lvfg
d*nfcvimlqk*lhvfvlppfvkiflqqf*l*qiqlsmxvslviymqlxlhmvvlhvgcg
lyvlqlvfic*l*kenqnqkdlkniiiyyvgvyh*fqqwamla---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI163 (VFI163Q) /CSM/VF/VFI1-C/VFI163Q.Seq.d/                        811   0.0
SSD736 (SSD736Q) /CSM/SS/SSD7-B/SSD736Q.Seq.d/                        781   0.0
SSJ151 (SSJ151Q) /CSM/SS/SSJ1-C/SSJ151Q.Seq.d/                        773   0.0
CFI888 (CFI888Q) /CSM/CF/CFI8-D/CFI888Q.Seq.d/                        666   0.0
SLD628 (SLD628Q) /CSM/SL/SLD6-B/SLD628Q.Seq.d/                        519   e-146
SSK720 (SSK720Q) /CSM/SS/SSK7-A/SSK720Q.Seq.d/                        494   e-139
SSG125 (SSG125Q) /CSM/SS/SSG1-B/SSG125Q.Seq.d/                         86   6e-16
SSE891 (SSE891Q) /CSM/SS/SSE8-D/SSE891Q.Seq.d/                         86   6e-16
SSC676 (SSC676Q) /CSM/SS/SSC6-D/SSC676Q.Seq.d/                         86   6e-16
SSA578 (SSA578Q) /CSM/SS/SSA5-D/SSA578Q.Seq.d/                         48   1e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   577   0.0    7
M21824|M21824.1 D.discoideum cAMP receptor I (car1) gene, complete cds.   781   0.0    1
X58193|X58193.1 D.discoideum DNA for inton II of cAMP receptor gene CAR1.   107   8e-42  2
S55234|S55234.1 Dictyostelium discoideum cAMP receptor subtype 2 (CAR2) gene, complete cds.    86   5e-22  3
S55235|S55235.1 cAR3=cAMP receptor subtype 3 [Dictyostelium, Genomic, 1709 nt].    80   1e-19  3
X58192|X58192.1 D.discoideum DNA for part of 5` region of intron I from cAMP  receptor gene CAR1 (oligo B).    68   2e-15  3
X79016|X79016.1 Dictyostelium discoideum cDNA for quit 1.          92   9e-15  1
L09637|L09637.1 Dictyostelium discoideum cAMP receptor (CAR1) gene, 5' flank.    68   2e-10  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   4e-06  13
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   4e-06  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P13773) RecName: Full=Cyclic AMP receptor 1;          Short=cAM...   280   1e-74
AY518271_2(AY518271|pid:none) Dictyostelium minutum SpkA gene, p...   199   3e-50
EU797668_1(EU797668|pid:none) Polysphondylium pallidum strain PN...   196   3e-49
AB045712_1(AB045712|pid:none) Polysphondylium pallidum gene for ...   188   5e-47
EU797669_1(EU797669|pid:none) Dictyostelium aureostipes strain Y...   187   2e-46
(P34907) RecName: Full=Cyclic AMP receptor 2;          Short=cAM...   177   2e-43
S55234_1(S55234|pid:none) Dictyostelium discoideum cAMP receptor...   173   2e-42
(Q9TX43) RecName: Full=Cyclic AMP receptor 4;          Short=cAM...   166   3e-40
A54813(A54813)cAMP receptor CAR4 - slime mold (Dictyostelium dis...   164   8e-40
AY518272_1(AY518272|pid:none) Dictyostelium fasciculatum cAMP re...    66   4e-10

 psg: 0.61  gvh: 0.63  alm: 0.26  top: 0.47  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.16  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VFI163 is cyt

>VFI163F.Seq
TATTTAAAATACAATCACATACATAAACTATCTAGATTTTTCACACATATATATATATAA
ATAAAAAAATAAAATGGGTCTTTTAGATGGAAATCCAGCCAATGAAACATCATTGGTTTT
ATTATTATTTGCCGATTTTTCTTCAATGNTGGGTTGTATGGCAGTGTTGATTGGTTTTTG
GAGATTAAAACTTTTGCGTAATCATGTTACAAAAGTAATTGCATGTTTTTGTGCTACCTC
CTTTTGTAAAGATTTTCCTTCAACAATTTTAACTTTAACAAATACAGCTGTCAATGGNGG
TTTCCCTTGTTATTTATATGCAATTGNAATTACATATGGTAGTTTTGCATGTTGGTTGTG
GACTTTATGTCTTGCAATTAGTATTTATATGTTAATTGTAAAAAGAGAACCAGAACCAGA
AAGATTTGAAAAATATTATTATTTATTATGTTGGGGTTTACCATTAATTTCAACAATGGG
CTATGTTGGCAANNNNNNNNNN