>VFI156 (VFI156Q) /CSM/VF/VFI1-C/VFI156Q.Seq.d/
TACTGGATTACATAGTTTTTATAAAAAAGAAAAAAATGAGATTCATCTTATTCTTTGTTT
TAATGTTAACAGCCTTGGCTGCTGGTAGAAGATTATCAGTTGAGGAAAGTCAATTCATTG
CCTTCCAAAATAAATATAATAAAATTTATTCAGCTGAAGAATATTTAGTTAAATTTGAAA
CCTTCAAATCAAATTTATTAAATATTGATGCCTTAAACAAACAAGCCACCACCATTGGAT
CTGATACTAAATTTGGTGTCAACAAATTTGCTGATCTCTCAAAAGAAGAATTCAAAAAAT
ATTACTTAAGCAGCAAAGAAGCCCGTTTAACTGATGACCTCCCAATGTTACCAAACTTAT
CAGACGATATCATTTCAGCAACCCCAGCCGCTTTCGATTGGAGAAATACTGGTGGTTCAA
CTAAATTCCCACAAGGTACTCCAGTTACCGCTGTTAAAAACCAAGGTCAATGTGGTTCAT
GTTGGTCATTCTCTACCACTGGTAACGTCGAAGGTCAACACTATTTATCAACTXXXXXXX
XXX

LDYIVFIKKKKMRFILFFVLMLTALAAGRRLSVEESQFIAFQNKYNKIYSAEEYLVKFET
FKSNLLNIDALNKQATTIGSDTKFGVNKFADLSKEEFKKYYLSSKEARLTDDLPMLPNLS
DDIISATPAAFDWRNTGGSTKFPQGTPVTAVKNQGQCGSCWSFSTTGNVEGQHYLS---

Frame A:
ywit*fl*krkk*dssyslf*c*qpwllvedyqlrkvnslpskiniikfiqlkni*lnlk
psnqiy*ilmp*tnkpppldlilnlvstnllisqkknsknit*aakkpv*lmtsqcyqty
qtisfqqpqplsigeilvvqlnshkvlqlpllktkvnvvhvghslplvtskvntiyq---


Frame B:
tglhsfykkekneihlilcfnvnslgcw*kiis*gksihclpk*i**nlfs*rifs*i*n
lqikfiky*clkqtshhhwi*y*iwcqqic*slkrriqkillkqqrspfn**ppnvtkli
rryhfsnpsrfrlekywwfn*iptryssyrc*kprsmwfmlvilyhw*rrrstlfin---


Frame C:
LDYIVFIKKKKMRFILFFVLMLTALAAGRRLSVEESQFIAFQNKYNKIYSAEEYLVKFET
FKSNLLNIDALNKQATTIGSDTKFGVNKFADLSKEEFKKYYLSSKEARLTDDLPMLPNLS
DDIISATPAAFDWRNTGGSTKFPQGTPVTAVKNQGQCGSCWSFSTTGNVEGQHYLS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG875 (VSG875Q) /CSM/VS/VSG8-D/VSG875Q.Seq.d/                        985   0.0
VFO892 (VFO892Q) /CSM/VF/VFO8-D/VFO892Q.Seq.d/                        985   0.0
VFO433 (VFO433Q) /CSM/VF/VFO4-B/VFO433Q.Seq.d/                        985   0.0
VFN663 (VFN663Q) /CSM/VF/VFN6-C/VFN663Q.Seq.d/                        985   0.0
VFN529 (VFN529Q) /CSM/VF/VFN5-B/VFN529Q.Seq.d/                        985   0.0
VFL786 (VFL786Q) /CSM/VF/VFL7-D/VFL786Q.Seq.d/                        985   0.0
VFL771 (VFL771Q) /CSM/VF/VFL7-C/VFL771Q.Seq.d/                        985   0.0
VFL510 (VFL510Q) /CSM/VF/VFL5-A/VFL510Q.Seq.d/                        985   0.0
VFL486 (VFL486Q) /CSM/VF/VFL4-D/VFL486Q.Seq.d/                        985   0.0
VFL429 (VFL429Q) /CSM/VF/VFL4-B/VFL429Q.Seq.d/                        985   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.       50   2e-12  3
BM395468|BM395468.1 50072-2-9-C11.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    66   3e-11  2
BM393359|BM393359.1 50071-2-9-C11.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence.    66   3e-11  2
AI067966|AI067966.1 EST209655 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCH35 5' end similar to cysteine protease 1, mRNA sequence.    62   3e-09  2
CD184146|CD184146.1 MS1-0042T-R222-D03-U.G MS1-0042 Schistosoma mansoni cDNA clone MS1-0042T-R222-D03.G, mRNA sequence.    62   3e-09  2
CD066200|CD066200.1 MA1-0048P-M036-G03-U.G MA1-0048 Schistosoma mansoni cDNA clone MA1-0048P-M036-G03.G, mRNA sequence.    62   3e-09  2
CD163034|CD163034.1 ML1-0081T-M291-C09-U.G ML1-0081 Schistosoma mansoni cDNA clone ML1-0081T-M291-C09.G, mRNA sequence.    62   3e-09  2
CD162874|CD162874.1 ML1-0081T-M271-C10-U.G ML1-0081 Schistosoma mansoni cDNA clone ML1-0081T-M271-C10.G, mRNA sequence.    62   3e-09  2
CD063075|CD063075.1 MA1-0029U-M019-B09-U.B MA1-0029 Schistosoma mansoni cDNA clone MA1-0029U-M019-B09.B, mRNA sequence.    62   3e-09  2
CD126038|CD126038.1 MF1-0002U-V052-A03-U.B MF1-0002 Schistosoma mansoni cDNA clone MF1-0002U-V052-A03.B, mRNA sequence.    62   3e-09  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   186   3e-46
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   106   4e-22
AJ583512_1(AJ583512|pid:none) Diabrotica virgifera virgifera mRN...   100   2e-20
AC149637_11(AC149637|pid:none) Medicago truncatula clone mth2-18...   100   2e-20
(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   100   3e-20
AJ242994_1(AJ242994|pid:none) Nicotiana tabacum mRNA for putativ...   100   4e-20
S30149(S30149;S24242) cysteine proteinase (EC 3.4.22.-) precurso...    99   5e-20
AK175856_1(AK175856|pid:none) Arabidopsis thaliana mRNA for puta...    99   7e-20
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    99   9e-20
AM430527_1(AM430527|pid:none) Vitis vinifera contig VV78X035441....    98   1e-19

 psg: 0.87  gvh: 0.83  alm: 0.50  top: 0.20  tms: 0.00  mit: 0.31  mip: 0.06
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VFI156 is exc

>VFI156F.Seq
TACTGGATTACATAGTTTTTATAAAAAAGAAAAAAATGAGATTCATCTTATTCTTTGTTT
TAATGTTAACAGCCTTGGCTGCTGGTAGAAGATTATCAGTTGAGGAAAGTCAATTCATTG
CCTTCCAAAATAAATATAATAAAATTTATTCAGCTGAAGAATATTTAGTTAAATTTGAAA
CCTTCAAATCAAATTTATTAAATATTGATGCCTTAAACAAACAAGCCACCACCATTGGAT
CTGATACTAAATTTGGTGTCAACAAATTTGCTGATCTCTCAAAAGAAGAATTCAAAAAAT
ATTACTTAAGCAGCAAAGAAGCCCGTTTAACTGATGACCTCCCAATGTTACCAAACTTAT
CAGACGATATCATTTCAGCAACCCCAGCCGCTTTCGATTGGAGAAATACTGGTGGTTCAA
CTAAATTCCCACAAGGTACTCCAGTTACCGCTGTTAAAAACCAAGGTCAATGTGGTTCAT
GTTGGTCATTCTCTACCACTGGTAACGTCGAAGGTCAACACTATTTATCAACTNNNNNNN
NNN