>VFI140 (VFI140Q) /CSM/VF/VFI1-B/VFI140Q.Seq.d/
XXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAATTAAATAAATTTCAAAAGTAAAAGG
TATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGT
AAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAAT
GGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGT

---kkkkkkkn*infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNG
DKWNDKFMSCLVG

Frame A:
---kkkkkkkklnkfqk*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw
**me**ihvmfgw


Frame B:
---kkkkkkkn*infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNG
DKWNDKFMSCLVG


Frame C:
---kkkkkkkik*iskvkgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmv
ingminschvwl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG876 (VSG876Q) /CSM/VS/VSG8-D/VSG876Q.Seq.d/                        192   1e-48
VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/                        192   1e-48
VHK589 (VHK589Q) /CSM/VH/VHK5-D/VHK589Q.Seq.d/                        192   1e-48
VHI760 (VHI760Q) /CSM/VH/VHI7-C/VHI760Q.Seq.d/                        192   1e-48
VHI219 (VHI219Q) /CSM/VH/VHI2-A/VHI219Q.Seq.d/                        192   1e-48
VHH812 (VHH812Q) /CSM/VH/VHH8-A/VHH812Q.Seq.d/                        192   1e-48
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                        192   1e-48
VHG454 (VHG454Q) /CSM/VH/VHG4-C/VHG454Q.Seq.d/                        192   1e-48
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                        192   1e-48
VHG158 (VHG158Q) /CSM/VH/VHG1-C/VHG158Q.Seq.d/                        192   1e-48

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   192   1e-45  1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   192   1e-45  1
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   192   1e-45  1
AC073869|AC073869.5 Homo sapiens chromosome 2 clone RP11-109E12, complete sequence.    48   0.049  1
AC022629|AC022629.3 Homo sapiens clone RP11-24O13, WORKING DRAFT SEQUENCE, 25 unordered pieces.    48   0.049  1
AC120839|AC120839.35 Pan troglodytes clone rp43-5n22, WORKING DRAFT SEQUENCE, 5 ordered pieces.    48   0.049  1
AC145214|AC145214.1 Homo sapiens fosmid clone XXFOS-82587F5 from 2, complete sequence.    48   0.049  1
AC120782|AC120782.25 Pan troglodytes clone rp43-45g12, complete sequence.    48   0.049  1
AC120781|AC120781.22 Pan troglodytes clone rp43-28m17, complete sequence.    48   0.049  1
AC023526|AC023526.2 Homo sapiens clone RP11-587F19, WORKING DRAFT SEQUENCE, 52 unordered pieces.    46   0.19   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   105   5e-22
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   100   2e-20

 psg: 0.77  gvh: 0.25  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 20.0 %: plasma membrane
	 12.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for VFI140 is nuc

>VFI140Z.Seq
NNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAATTAAATAAATTTCAAAAGTAAAAGG
TATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTTCTTTGGT
AAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATTCAACAAT
GGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGT