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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM645
Library AF
(Link to library)
Clone ID AFM645
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM645 (AFM645Q) /CSM/AF/AFM6-B/AFM645Q.Seq.d/
XXXXXXXXXXCTGGAAAANTTTNNANCAAAAAANAAGNTTTTTGNCCCNTTTTTTTTTAA
AAAAAAAAAAAAAAAAAAAAATAAAATAAAAAATGTCATACGTTCCATCATCAAAATTAA
TTAAAGATTTGGTCAAACAAGATTGTTTAAAAAAGAACCTCTATGAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---EXFXXKXKXFXPFFFKKKKKKKNKIKNVIRSIIKIN*rfgqtrlfkkepl*
Translated Amino Acid sequence (All Frames) 
Frame A:
---wkxxxqkxxflxxfflkkkkkkkik*kmsyvpssklikdlvkqdclkknlye


Frame B:
---gkxxxkkxxfxpxff*kkkkkkk*nkkchtfhhqn*lkiwsnkiv*krtsmk


Frame C:
---EXFXXKXKXFXPFFFKKKKKKKNKIKNVIRSIIKIN*rfgqtrlfkkepl*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM645 (AFM645Q) /CSM/AF/AFM6-B/AFM645Q.Seq.d/                        149   1e-35
VFC870 (VFC870Q) /CSM/VF/VFC8-C/VFC870Q.Seq.d/                         38   0.039
SSA596 (SSA596Q) /CSM/SS/SSA5-D/SSA596Q.Seq.d/                         36   0.15
CHP250 (CHP250Q) /CSM/CH/CHP2-C/CHP250Q.Seq.d/                         36   0.15
VSG245 (VSG245Q) /CSM/VS/VSG2-B/VSG245Q.Seq.d/                         34   0.61
VFF819 (VFF819Q) /CSM/VF/VFF8-A/VFF819Q.Seq.d/                         34   0.61
VFD371 (VFD371Q) /CSM/VF/VFD3-C/VFD371Q.Seq.d/                         34   0.61
SSK848 (SSK848Q) /CSM/SS/SSK8-B/SSK848Q.Seq.d/                         34   0.61
SSJ127 (SSJ127Q) /CSM/SS/SSJ1-B/SSJ127Q.Seq.d/                         34   0.61
SSA656 (SSA656Q) /CSM/SS/SSA6-C/SSA656Q.Seq.d/                         34   0.61
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...   149   4e-32  1
(BJ347187) Dictyostelium discoideum cDNA clone:dda26i12, 3' ...   149   4e-32  1
(M84214) Cucumis sativus ORF 1, chitinase, and ORF 3 genes, ...    44   1.5    1
(I75134) Sequence 36 from patent US 5689044.                       44   1.5    1
(I59807) Sequence 36 from patent US 5654414.                       44   1.5    1
(I56941) Sequence 36 from patent US 5650505.                       44   1.5    1
(I38466) Sequence 36 from patent US 5614395.                       44   1.5    1
(AR409682) Sequence 36 from patent US 6632981.                     44   1.5    1
(AR067514) Sequence 36 from patent US 5851766.                     44   1.5    1
(AR064589) Sequence 36 from patent US 5847258.                     44   1.5    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115605_2(AC115605|pid:none) Dictyostelium discoideum chromosom...    54   2e-06
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM645 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM645Z
3' end seq. 
>AFM645Z.Seq
XXXXXXXXXXCTGGAAAANTTTNNANCAAAAAANAAGNTTTTTGNCCCNTTTTTTTTTAA
AAAAAAAAAAAAAAAAAAAAATAAAATAAAAAATGTCATACGTTCCATCATCAAAATTAA
TTAAAGATTTGGTCAAACAAGATTGTTTAAAAAAGAACCTCTATGAAA
Length of 3' end seq. 168
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -