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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM643
Library AF
(Link to library)
Clone ID AFM643
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM643P
(Link to Original site)
Representative DNA sequence 
>AFM643 (AFM643Q) /CSM/AF/AFM6-B/AFM643Q.Seq.d/
ATAGTAATTATTTTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAANCATAT
NTAATGATTGATTCAGATNTAGAATTAAATAAAATAATAGTAGTNCCATTAATATCAAAA
GATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATCAA
CCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTNTTTAATTAATCAAACTTCT
GGTAATAATGATGAANAAAGATTAGTTTTATTATTAAAACANCANCANCAAGAGGTAGAA
AAAGATAAANCATTTGATNCAAATAAATATTTTAACGAATTATCAACAATTTTATTTGGA
AAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATNTAATGTTAAAATATTTA
ACATATACTCGTCAAGGATTAGTAATGATTGCAGACCANCAAACCAAAGGTAGAGGACGT
GGNGTAAATAAATTCTTGTCTCCATTGGGATGTTNGTTAATGTCATTCAAATGTAAACAA
ACTGATGGTAATAAATTACCATTCCTTCAATXXXXXXXXXXGAATCNAATTATNTTAACA
ATGAATTTGATGTTGTCATTGGNGTTGGTGTTAATCTTTCAAATTCAAATAATCCATCNA
CAACTATAAATCAATTAATTCAAAANAAAAAATATGGATTTTCATCATCATCATTGGCAA
CAAGNACTGATATTCCNATTTATATTAGTANAGAANAATTGGTTTCAAAATTNTTTAACA
AATTCGAACCAATGTTTATGGAATTTACAANANATGGCTTTAATGCAGATNTTGAAAATA
NATACNCTGACTTATGGATGCATACAAATCNAATTGTAAAATTTAAANAAANAGATAACC
NTCATGTTAAAATCATTGGNATTTCTGANAGTGGNTTCCTTAAAGCTATTGAATGTGATG
CTGATGGTAANACATCTTCTGACTCTGAAACCGTTGAGCTTCNCCCNGATGGNACTTCNT
TTGATATTCAAAACTTAATTTTAANGCNAAAATCCCNACAACCNAAATAGATAAAAAAAA
AAAAATTTTTAGTAATCACTTTTTTTCCCAATATTTTCTTTACAGAATAATAAATAATAA
ATAAATAATAAATAAATAATAAATATATAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
iviiffflpslfflnnk*XYXMIDSDXELNKIIVVPLISKDSLDINDAKNYYGTELYPNQ
PIPTIVSAQSEVDXLINQTSGNNDEXRLVLLLKXXXQEVEKDKXFDXNKYFNELSTILFG
KNLIHSEVISSTQDXMLKYLTYTRQGLVMIADXQTKGRGRGVNKFLSPLGCXLMSFKCKQ
TDGNKLPFLQ---

---ESNYXNNEFDVVIGVGVNLSNSNNPSTTINQLIQXKKYGFSSSSLATXTDIPIYISX
EXLVSKXFNKFEPMFMEFTXXGFNADXENXYXDLWMHTNXIVKFKXXDNXHVKIIGISXS
GFLKAIECDADGXTSSDSETVELXPDGTSFDIQNLILXXKSXQPK*ikkkkflvitffpn
iffte**iink**innkyi
Translated Amino Acid sequence (All Frames) 
Frame A:
iviiffflpslfflnnk*XYXMIDSDXELNKIIVVPLISKDSLDINDAKNYYGTELYPNQ
PIPTIVSAQSEVDXLINQTSGNNDEXRLVLLLKXXXQEVEKDKXFDXNKYFNELSTILFG
KNLIHSEVISSTQDXMLKYLTYTRQGLVMIADXQTKGRGRGVNKFLSPLGCXLMSFKCKQ
TDGNKLPFLQ---

---ESNYXNNEFDVVIGVGVNLSNSNNPSTTINQLIQXKKYGFSSSSLATXTDIPIYISX
EXLVSKXFNKFEPMFMEFTXXGFNADXENXYXDLWMHTNXIVKFKXXDNXHVKIIGISXS
GFLKAIECDADGXTSSDSETVELXPDGTSFDIQNLILXXKSXQPK*ikkkkflvitffpn
iffte**iink**innkyi

Frame B:
**lfffsfphyff*iinxhx**liqx*n*ik***xh*yqkih*ilmmqkitmepsytqin
qfqp*fqlnlk*ix*likllvimmxkd*fyy*nxxxkr*kkixhlxqiniltnyqqfyle
ri*filk*lvqhkx*c*ni*hilvkd***lqtxkpkvedvx*insclhwdvx*chsnvnk
lmvinyhsfn---

---nxixltmnlmlslxlvlifqiqiihxql*in*fkxknmdfhhhhwqqxlifxfilvx
xnwfqnxltnsnqclwnlqxmalmqxlkixtltygciqixl*nlxkxitxmlkslxflxv
xslkllnvmlmvxhlltlkplsfxxmxlxlifkt*f*xxnpxnxnr*kkknf**slffpi
fslqnnk**innk*iiniy

Frame C:
snyfffpsliiffk**ixixnd*frxrik*nnssxinikrfiry**ckkllwnrvipkst
nsnhsfssi*srxfn*snfw****xkisfiiktxxxrgrkr*xi*xk*if*riinnfiwk
efnsf*sn*fntrxnvkifniyssrisndcrpxnqr*rtwxk*ilvsigmxvnviqm*tn
*w**itips---

---ixlx*q*i*cchwxwc*sfkfk*sixnyksinskxkiwifiiiignkx*ysxly*xr
xigfkix*qirtnvygiyxxwl*crx*kxix*lmdayksncki*xxr*psc*nhwxf*xw
xp*sy*m*c*w*xif*l*nr*aspxwxfx*ysklnfxakipttxidkkkkifsnhffsqy
flyriinnk*iink**iy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM643 (AFM643Q) /CSM/AF/AFM6-B/AFM643Q.Seq.d/                       1651   0.0
SLA592 (SLA592Q) /CSM/SL/SLA5-D/SLA592Q.Seq.d/                        954   0.0
SFJ562 (SFJ562Q) /CSM/SF/SFJ5-C/SFJ562Q.Seq.d/                        954   0.0
SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/                        954   0.0
AFL119 (AFL119Q) /CSM/AF/AFL1-A/AFL119Q.Seq.d/                        954   0.0
AFI685 (AFI685Q) /CSM/AF/AFI6-D/AFI685Q.Seq.d/                        954   0.0
AFJ338 (AFJ338Q) /CSM/AF/AFJ3-B/AFJ338Q.Seq.d/                        914   0.0
AFL454 (AFL454Q) /CSM/AF/AFL4-C/AFL454Q.Seq.d/                        912   0.0
AFH395 (AFH395Q) /CSM/AF/AFH3-D/AFH395Q.Seq.d/                        841   0.0
AFL194 (AFL194Q) /CSM/AF/AFL1-D/AFL194Q.Seq.d/                        807   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ399885) Dictyostelium discoideum cDNA clone:dds7k24, 3' e...   710   0.0    3
(AU060217) Dictyostelium discoideum slug cDNA, clone SLA592.      954   0.0    3
(BJ329786) Dictyostelium discoideum cDNA clone:dda26e12, 5' ...   961   0.0    1
(BJ389945) Dictyostelium discoideum cDNA clone:dds20k15, 5' ...   954   0.0    1
(BJ388094) Dictyostelium discoideum cDNA clone:dds7k24, 5' e...   954   0.0    1
(BJ328128) Dictyostelium discoideum cDNA clone:dda23e05, 5' ...   954   0.0    1
(BJ327018) Dictyostelium discoideum cDNA clone:dda18i22, 5' ...   954   0.0    1
(BJ327159) Dictyostelium discoideum cDNA clone:dda19l09, 5' ...   914   0.0    1
(BJ328293) Dictyostelium discoideum cDNA clone:dda23l14, 5' ...   912   0.0    1
(BJ341315) Dictyostelium discoideum cDNA clone:dda6j03, 3' e...   638   0.0    3
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007505_1(AC007505|pid:none) Arabidopsis thaliana chromosome I ...    65   4e-09
CR382131_1250(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    63   2e-08
G84651(G84651)biotin holocarboxylase synthetase [imported] - Ara...    63   2e-08
AC006053_17(AC006053|pid:none) Arabidopsis thaliana chromosome 2...    63   2e-08
AP008208_425(AP008208|pid:none) Oryza sativa (japonica cultivar-...    61   6e-08
(P48445) RecName: Full=Biotin--protein ligase;          EC=6.3.4...    60   2e-07
CP000582_324(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...    59   2e-07
BC125906_1(BC125906|pid:none) Danio rerio holocarboxylase synthe...    57   9e-07
BC154426_1(BC154426|pid:none) Danio rerio holocarboxylase synthe...    57   9e-07
BC068401_1(BC068401|pid:none) Danio rerio holocarboxylase synthe...    57   9e-07
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM643 is

5' end seq. ID AFM643F
5' end seq. 
>AFM643F.Seq
ATAGTAATTATTTTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAANCATAT
NTAATGATTGATTCAGATNTAGAATTAAATAAAATAATAGTAGTNCCATTAATATCAAAA
GATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATCAA
CCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTNTTTAATTAATCAAACTTCT
GGTAATAATGATGAANAAAGATTAGTTTTATTATTAAAACANCANCANCAAGAGGTAGAA
AAAGATAAANCATTTGATNCAAATAAATATTTTAACGAATTATCAACAATTTTATTTGGA
AAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATNTAATGTTAAAATATTTA
ACATATACTCGTCAAGGATTAGTAATGATTGCAGACCANCAAACCAAAGGTAGAGGACGT
GGNGTAAATAAATTCTTGTCTCCATTGGGATGTTNGTTAATGTCATTCAAATGTAAACAA
ACTGATGGTAATAAATTACCATTCCTTCAATXXXXXXXXXX
Length of 5' end seq. 581
3' end seq. ID AFM643Z
3' end seq. 
>AFM643Z.Seq
XXXXXXXXXXGAATCNAATTATNTTAACAATGAATTTGATGTTGTCATTGGNGTTGGTGT
TAATCTTTCAAATTCAAATAATCCATCNACAACTATAAATCAATTAATTCAAAANAAAAA
ATATGGATTTTCATCATCATCATTGGCAACAAGNACTGATATTCCNATTTATATTAGTAN
AGAANAATTGGTTTCAAAATTNTTTAACAAATTCGAACCAATGTTTATGGAATTTACAAN
ANATGGCTTTAATGCAGATNTTGAAAATANATACNCTGACTTATGGATGCATACAAATCN
AATTGTAAAATTTAAANAAANAGATAACCNTCATGTTAAAATCATTGGNATTTCTGANAG
TGGNTTCCTTAAAGCTATTGAATGTGATGCTGATGGTAANACATCTTCTGACTCTGAAAC
CGTTGAGCTTCNCCCNGATGGNACTTCNTTTGATATTCAAAACTTAATTTTAANGCNAAA
ATCCCNACAACCNAAATAGATAAAAAAAAAAAAATTTTTAGTAATCACTTTTTTTCCCAA
TATTTTCTTTACAGAATAATAAATAATAAATAAATAATAAATAAATAATAAATATATAT
Length of 3' end seq. 599
Connected seq. ID AFM643P
Connected seq. 
>AFM643P.Seq
ATAGTAATTATTTTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAANCATAT
NTAATGATTGATTCAGATNTAGAATTAAATAAAATAATAGTAGTNCCATTAATATCAAAA
GATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAATCAA
CCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTNTTTAATTAATCAAACTTCT
GGTAATAATGATGAANAAAGATTAGTTTTATTATTAAAACANCANCANCAAGAGGTAGAA
AAAGATAAANCATTTGATNCAAATAAATATTTTAACGAATTATCAACAATTTTATTTGGA
AAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATNTAATGTTAAAATATTTA
ACATATACTCGTCAAGGATTAGTAATGATTGCAGACCANCAAACCAAAGGTAGAGGACGT
GGNGTAAATAAATTCTTGTCTCCATTGGGATGTTNGTTAATGTCATTCAAATGTAAACAA
ACTGATGGTAATAAATTACCATTCCTTCAAT----------GAATCNAATTATNTTAACA
ATGAATTTGATGTTGTCATTGGNGTTGGTGTTAATCTTTCAAATTCAAATAATCCATCNA
CAACTATAAATCAATTAATTCAAAANAAAAAATATGGATTTTCATCATCATCATTGGCAA
CAAGNACTGATATTCCNATTTATATTAGTANAGAANAATTGGTTTCAAAATTNTTTAACA
AATTCGAACCAATGTTTATGGAATTTACAANANATGGCTTTAATGCAGATNTTGAAAATA
NATACNCTGACTTATGGATGCATACAAATCNAATTGTAAAATTTAAANAAANAGATAACC
NTCATGTTAAAATCATTGGNATTTCTGANAGTGGNTTCCTTAAAGCTATTGAATGTGATG
CTGATGGTAANACATCTTCTGACTCTGAAACCGTTGAGCTTCNCCCNGATGGNACTTCNT
TTGATATTCAAAACTTAATTTTAANGCNAAAATCCCNACAACCNAAATAGATAAAAAAAA
AAAAATTTTTAGTAATCACTTTTTTTCCCAATATTTTCTTTACAGAATAATAAATAATAA
ATAAATAATAAATAAATAATAAATATATAT
Length of connected seq. 1160
Full length Seq ID -
Full length Seq. -
Length of full length seq. -