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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM642
Library AF
(Link to library)
Clone ID AFM642
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM642 (AFM642Q) /CSM/AF/AFM6-B/AFM642Q.Seq.d/
XXXXXXXXXXAATTATGTAAGAAATATAACTGTTTATTGATGGTTGATTGTGTGGCTGCA
TTGGGCGGTGTGCCAGTGTTTGTCGATGATTGGAAAATCGACGCATGTTATACCGGCACT
CAAAAATGCTTGAGTGGTCCACCAGGCATTTCACCACTTACATTCAGTAATGCAGCTTGT
CACAAGATTGCCACTAGAAAAACACCCGTTGCCAACTGGTATTTGGATTGCAATTTACTG
GGTGGTTATTGGTGTCCAGAATTCAATTTAGCAGATGGCACAATCGCCAAAGAGGAGAAA
TCAACAATACCCAAAAGATACCATCACACAACTCCTGCAAATTTATTGTACTCGTTGAGA
GAGGCATTGGTTTTATTGGTGGAGGAGGGTCTTGACAATGTATGGAAACGTCATCAAGAC
GCTGCCATATTGTTGTATGCCGGTTTGGAAAGCTTAGGTTTGAAACCATTTGTTCCACAA
TTAAATGAAGCACCAGAAAAAAGGTGGTCGTCTTTTCAGTTTAACCACTGTTAACATCCC
AGATGGTGTCGATGGTAAAATGGTCATGAAATATCTTTTGGATAATTTCAATATTGAAAT
TGCTGGTGGTATTGGTGCTTCNGCTGGAAAAGTTTGGCGTATTGG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---LCKKYNCLLMVDCVAALGGVPVFVDDWKIDACYTGTQKCLSGPPGISPLTFSNAACH
KIATRKTPVANWYLDCNLLGGYWCPEFNLADGTIAKEEKSTIPKRYHHTTPANLLYSLRE
ALVLLVEEGLDNVWKRHQDAAILLYAGLESLGLKPFVPQLNEAPEKRWSSFQFNHC*hpr
wcrw*ngheisfg*fqy*ncwwywcfxwkslayw
Translated Amino Acid sequence (All Frames) 
Frame A:
---im*ei*lfidg*lcgcigrcasvcr*lenrrmlyrhskmlewstrhfttyiq*csls
qdch*kntrcqlvfglqftgwllvsriqfsrwhnrqrgeinntqkipshnsckfivlver
gigfiggggs*qcmetssrrchivvcrfgklrfeticstik*strkkvvvfsv*plltsq
mvsmvkws*nifwiisilkllvvlvlxlekfgvl


Frame B:
---LCKKYNCLLMVDCVAALGGVPVFVDDWKIDACYTGTQKCLSGPPGISPLTFSNAACH
KIATRKTPVANWYLDCNLLGGYWCPEFNLADGTIAKEEKSTIPKRYHHTTPANLLYSLRE
ALVLLVEEGLDNVWKRHQDAAILLYAGLESLGLKPFVPQLNEAPEKRWSSFQFNHC*hpr
wcrw*ngheisfg*fqy*ncwwywcfxwkslayw


Frame C:
---yvrnitvy*wlivwlhwavcqclsmigksthvipalkna*vvhqafhhlhsvmqlvt
rlplekhplptgiwiaiywvvigvqnsi*qmaqspkrrnqqypkdtitqllqiyctr*er
hwfywwrrvltmygnviktlpyccmpvwka*v*nhlfhn*mkhqkkggrlfslttvnipd
gvdgkmvmkylldnfnieiaggigasagkvwri
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM642 (AFM642Q) /CSM/AF/AFM6-B/AFM642Q.Seq.d/                       1253   0.0
VFO737 (VFO737Q) /CSM/VF/VFO7-B/VFO737Q.Seq.d/                       1213   0.0
SSG734 (SSG734Q) /CSM/SS/SSG7-B/SSG734Q.Seq.d/                       1213   0.0
CFI274 (CFI274Q) /CSM/CF/CFI2-D/CFI274Q.Seq.d/                       1213   0.0
CFI143 (CFI143Q) /CSM/CF/CFI1-B/CFI143Q.Seq.d/                       1207   0.0
AFO677 (AFO677Q) /CSM/AF/AFO6-D/AFO677Q.Seq.d/                       1174   0.0
AFL319 (AFL319Q) /CSM/AF/AFL3-A/AFL319Q.Seq.d/                       1172   0.0
SSK266 (SSK266Q) /CSM/SS/SSK2-C/SSK266Q.Seq.d/                       1146   0.0
VSG442 (VSG442Q) /CSM/VS/VSG4-B/VSG442Q.Seq.d/                        997   0.0
SFD463 (SFD463Q) /CSM/SF/SFD4-C/SFD463Q.Seq.d/                        995   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347152) Dictyostelium discoideum cDNA clone:dda26c12, 3' ...  1253   0.0    1
(BJ346420) Dictyostelium discoideum cDNA clone:dda30i20, 3' ...  1174   0.0    1
(C89739) Dictyostelium discoideum slug cDNA, clone SSG734.        965   0.0    2
(BJ375067) Dictyostelium discoideum cDNA clone:ddc17e11, 3' ...   965   0.0    2
(BJ375188) Dictyostelium discoideum cDNA clone:ddc17c20, 3' ...   957   0.0    2
(BJ345239) Dictyostelium discoideum cDNA clone:dda23f05, 3' ...   928   0.0    2
(BJ436203) Dictyostelium discoideum cDNA clone:ddv30j09, 3' ...   898   0.0    2
(C91448) Dictyostelium discoideum slug cDNA, clone SSK266.        890   0.0    2
(AU266489) Dictyostelium discoideum vegetative cDNA clone:VS...   898   0.0    2
(BJ399834) Dictyostelium discoideum cDNA clone:dds7n16, 3' e...   825   0.0    3
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GT6) RecName: Full=Serine--pyruvate aminotransferase;       ...   347   e-110
CP000806_2867(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   162   2e-46
CP001287_3638(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...   162   2e-45
CP000828_2185(CP000828|pid:none) Acaryochloris marina MBIC11017,...   154   3e-42
CP000951_173(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...   152   1e-41
AP008231_1934(AP008231|pid:none) Synechococcus elongatus PCC 630...   150   2e-41
CP000100_2158(CP000100|pid:none) Synechococcus elongatus PCC 794...   150   2e-41
FM178379_445(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c...   157   2e-41
CP000606_293(CP000606|pid:none) Shewanella loihica PV-4, complet...   152   3e-41
CP000469_358(CP000469|pid:none) Shewanella sp. ANA-3, complete g...   160   7e-41
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM642 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM642Z
3' end seq. 
>AFM642Z.Seq
XXXXXXXXXXAATTATGTAAGAAATATAACTGTTTATTGATGGTTGATTGTGTGGCTGCA
TTGGGCGGTGTGCCAGTGTTTGTCGATGATTGGAAAATCGACGCATGTTATACCGGCACT
CAAAAATGCTTGAGTGGTCCACCAGGCATTTCACCACTTACATTCAGTAATGCAGCTTGT
CACAAGATTGCCACTAGAAAAACACCCGTTGCCAACTGGTATTTGGATTGCAATTTACTG
GGTGGTTATTGGTGTCCAGAATTCAATTTAGCAGATGGCACAATCGCCAAAGAGGAGAAA
TCAACAATACCCAAAAGATACCATCACACAACTCCTGCAAATTTATTGTACTCGTTGAGA
GAGGCATTGGTTTTATTGGTGGAGGAGGGTCTTGACAATGTATGGAAACGTCATCAAGAC
GCTGCCATATTGTTGTATGCCGGTTTGGAAAGCTTAGGTTTGAAACCATTTGTTCCACAA
TTAAATGAAGCACCAGAAAAAAGGTGGTCGTCTTTTCAGTTTAACCACTGTTAACATCCC
AGATGGTGTCGATGGTAAAATGGTCATGAAATATCTTTTGGATAATTTCAATATTGAAAT
TGCTGGTGGTATTGGTGCTTCNGCTGGAAAAGTTTGGCGTATTGG
Length of 3' end seq. 645
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -